Dr. rer. nat. J. (Jianbo) Zhang

Assistant Professor

Faculteit der Natuurwetenschappen, Wiskunde en Informatica

Swammerdam Institute for Life Sciences

Bezoekadres

Science Park 904
Kamernummer: C3.262

Postadres

Postbus 94232
1090 GE Amsterdam

Contactgegevens

https://www.gumi-mps.com/

Publicaties
2024

Huang, Y.-J., Lewis, C. A., Wright, C., Schneider, K., Kemmitt, J., Trumper, D. L., Breault, D. T., Yilmaz, O., Griffith, L. G., & Zhang, J. (2024). Faecalibacterium prausnitzii A2-165 metabolizes host-and media-derived chemicals and induces transcriptional changes in colonic epithelium in GuMI human gut microphysiological system. Microbiome Research Reports, 3(3), Article 30. https://doi.org/10.20517/mrr.2024.14 [details]
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Pasman, R., Zhang, J., Zaat, S. A. J., Brul, S., & Krom, B. P. (2024). A customizable and defined medium supporting culturing of Candida albicans, Staphylococcus aureus, and human oral epithelial cells. Applied and Environmental Microbiology, 90(8), Article e0036024. https://doi.org/10.1128/aem.00360-24 [details]
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A customizable and defined medium supporting culturing of Candida albicans
Supplementary files
Supplemental figures

Zhang, J., Huang, Y.-J., Trapecar, M., Wright, C., Schneider, K., Kemmitt, J., Hernandez-Gordillo, V., Yoon, J. Y., Poyet, M., Alm, E. J., Breault, D. T., Trumper, D. L., & Griffith, L. G. (2024). An immune-competent human gut microphysiological system enables inflammation-modulation by Faecalibacterium prausnitzii. npj Biofilms and Microbiomes, 10, Article 31. https://doi.org/10.1038/s41522-024-00501-z
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An immune-competent human gut microphysiological system
Supplementary files
Supplementary material
Reporting summary

2023

Bouges, E., Segers, C., Leys, N., Lebeer, S., Zhang, J., & Mastroleo, F. (2023). Human Intestinal Organoids and Microphysiological Systems for Modeling Radiotoxicity and Assessing Radioprotective Agents. Cancers, 15(24), Article 5859. https://doi.org/10.3390/cancers15245859 [details]
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van Leeuwen, P. T., Brul, S., Zhang, J., & Wortel, M. T. (2023). Synthetic microbial communities (SynComs) of the human gut: design, assembly, and applications. FEMS Microbiology Reviews, 47(2), Article fuad012. https://doi.org/10.1093/femsre/fuad012 [details]
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2022

Zhang, J., & Schwab, C. (2022). Is acrolein a reuterin-borne chemical hazard in biopreserved foods? Food Chemistry Advances, 1, Article 100044. https://doi.org/10.1016/j.focha.2022.100044 [details]
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2021

Ramirez Garcia, A., Zhang, J., Greppi, A., Constancias, F., Wortmann, E., Wandres, M., Hurley, K., Pascual-García, A., Ruscheweyh, H. J., Sturla, S. J., Lacroix, C., & Schwab, C. (2021). Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism. Environmental Microbiology, 23(3), 1765-1779. https://doi.org/10.1111/1462-2920.15431

Zhang, J., Hernandez-Gordillo, V., Trapecar, M., Wright, C., Taketani, M., Schneider, K., Chen, W. L. K., Stas, E., Breault, D. T., Carrier, R. L., Voigt, C. A., & Griffith, L. G. (2021). Coculture of primary human colon monolayer with human gut bacteria. Nature Protocols, 16(8), 3874-3900. https://doi.org/10.1038/s41596-021-00562-w

Zhang, J., Huang, Y. J., Yoon, J. Y., Kemmitt, J., Wright, C., Schneider, K., Sphabmixay, P., Hernandez-Gordillo, V., Holcomb, S. J., Bhushan, B., Rohatgi, G., Benton, K., Carpenter, D., Kester, J. C., Eng, G., Breault, D. T., Yilmaz, O., Taketani, M., Voigt, C. A., ... Griffith, L. G. (2021). Primary Human Colonic Mucosal Barrier Crosstalk with Super Oxygen-Sensitive Faecalibacterium prausnitzii in Continuous Culture. Med, 2(1), 74-98.e9. https://doi.org/10.1016/j.medj.2020.07.001

2020

Appert, O., Ramirez Garcia, A., Frei, R., Roduit, C., Constancias, F., Neuzil-Bunesova, V., Ferstl, R., Zhang, J., Akdis, C., Lauener, R., Lacroix, C., & Schwab, C. (2020). Initial butyrate producers during infant gut microbiota development are endospore formers. Environmental Microbiology, 22(9), 3909-3921. https://doi.org/10.1111/1462-2920.15167

Taketani, M., Zhang, J., Zhang, S., Triassi, A. J., Huang, Y. J., Griffith, L. G., & Voigt, C. A. (2020). Genetic circuit design automation for the gut resident species Bacteroides thetaiotaomicron. Nature Biotechnology, 38(8), 962-969. https://doi.org/10.1038/s41587-020-0468-5

2019

Zhang, J., Empl, M. T., Schneider, M., Schröder, B., Stadnicka-Michalak, J., Breves, G., Steinberg, P., & Sturla, S. J. (2019). Gut microbial transformation of the dietary mutagen MeIQx may reduce exposure levels without altering intestinal transport. Toxicology in vitro, 59, 238-245. https://doi.org/10.1016/j.tiv.2019.04.004

Zhang, J., Lacroix, C., Wortmann, E., Ruscheweyh, H. J., Sunagawa, S., Sturla, S. J., & Schwab, C. (2019). Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. BMC Microbiology, 19(1), Article 99. https://doi.org/10.1186/s12866-019-1483-x

2018

Zhang, J., Sturla, S., Lacroix, C., & Schwab, C. (2018). Gut microbial glycerol metabolism as an endogenous acrolein source. MBio, 9(1), Article e01947-17. https://doi.org/10.1128/mBio.01947-17

2017

Zhang, J., Empl, M. T., Schwab, C., Fekry, M. I., Engels, C., Schneider, M., Lacroix, C., Steinberg, P., & Sturla, S. J. (2017). Gut microbial transformation of the dietary imidazoquinoxaline mutagen MelQx reduces its cytotoxic and mutagenic potency. Toxicological Sciences, 159(1), 266-276. https://doi.org/10.1093/toxsci/kfx132

2016

Engels, C., Schwab, C., Zhang, J., Stevens, M. J. A., Bieri, C., Ebert, M. O., McNeill, K., Sturla, S. J., & Lacroix, C. (2016). Acrolein contributes strongly to antimicrobial and heterocyclic amine transformation activities of reuterin. Scientific Reports, 6, Article 36246. https://doi.org/10.1038/srep36246

Fekry, M. I., Engels, C., Zhang, J., Schwab, C., Lacroix, C., Sturla, S. J., & Chassard, C. (2016). The strict anaerobic gut microbe Eubacterium hallii transforms the carcinogenic dietary heterocyclic amine 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP). Environmental Microbiology Reports, 8(2), 201-209. https://doi.org/10.1111/1758-2229.12369
2020

Taketani, M., Zhang, J., Zhang, S., Triassi, A. J., Huang, Y. J., Griffith, L. G., & Voigt, C. A. (2020). Author Correction: Genetic circuit design automation for the gut resident species Bacteroides thetaiotaomicron (Nature Biotechnology, (2020), 38, 8, (962-969), 10.1038/s41587-020-0468-5). Nature Biotechnology, 38(8), 1001. https://doi.org/10.1038/s41587-020-0545-9
Tijdschriftredactie

Zhang, J. (member of editorial board) (2022). BMC Microbiology (Journal).

Andere

Zhang, J. (participant) (13-8-2023). 266th ACS National Meeting, San Francisco. Organizer of symposium "Advanced In-vitro Models for Chemical Toxicity"This symposium will focus on the development and application of organ-on-chip (…) (organising a conference, workshop, ...).
2024

Pasman, R. (2024). C. albicans and S. aureus: 1+1=3. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis (complete) (embargo until 18 October 2025)
Front matter
Chapter 1: General introduction
Chapter 2: The role of the oral immune system in oropharyngeal candidiasis-facilitated invasion and dissemination of Staphylococcus aureus
Chapter 3: A customizable and defined medium supporting culturing of Candida albicans, Staphylococcus aureus, and human oral epithelial cells
Chapter 4: Secreted factors of Staphylococcus aureus promote co-invasion with Candida albicans by inducing hyphae formation and invasion (embargo until 18 October 2025)
Chapter 5: Candida albicans and Staphylococcus aureus reciprocally promote secretion of virulence factors (embargo until 18 October 2025)
Chapter 6: The secretome of Candida albicans and Staphylococcus aureus co-cultures promotes expression of pro-inflammatory genes in THP-1 M0 macrophages (embargo until 18 October 2025)
Chapter 7: General discussion (embargo until 18 October 2025)
Chapter 8: Summary/Samenvatting (embargo until 18 October 2025)
Acknowledgements
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Dr. rer. nat. J. (Jianbo) Zhang

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