Hao, Y., Závodszky, G., Tersteeg, C., Barzegari, M., & Hoekstra, A. G. (2023). Image-based flow simulation of platelet aggregates under different shear rates. PLoS Computational Biology, 19(7), Article e1010965. https://doi.org/10.1371/JOURNAL.PCBI.1010965[details]
Spieker, C. J., Asteriou, K., & Zav́odszky, G. (2023). Simulating Initial Steps of Platelet Aggregate Formation in a Cellular Blood Flow Environment. In J. Mikyška, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2023: 23rd International Conference, Prague, Czech Republic, July 3–5, 2023 : proceedings (Vol. III, pp. 323-336). (Lecture Notes in Computer Science; Vol. 10475). Springer. Advance online publication. https://doi.org/10.1007/978-3-031-36024-4_26[details]
Spieker, C. J., Závodszky, G., Mouriaux, C., Mangin, P. H., & Hoekstra, A. G. (2023). Initial platelet aggregation in the complex shear environment of a punctured vessel model. Physics of Fluids, 35(7), Article 071904 . https://doi.org/10.1063/5.0157814[details]
van Dijk, J., Zavodszky, G., Varbanescu, A.-L., Pimentel, A. D., & Hoekstra, A. (2023). Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. In R. Wyrzykowski, J. Dongarra, E. Deelman, & K. Karczewski (Eds.), Parallel Processing and Applied Mathematics: 14th International Conference, PPAM 2022, Gdansk, Poland, September 11–14, 2022 : revised selected papers (Vol. I, pp. 183-196). (Lecture Notes in Computer Science; Vol. 13826). Springer. https://doi.org/10.1007/978-3-031-30442-2_14[details]
Czaja, B., de Bouter, J., Heisler, M., Závodszky, G., Karst, S., Sarunic, M., Maberley, D., & Hoekstra, A. (2022). The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Computer Methods in Biomechanics and Biomedical Engineering, 25(15), 1691-1709. Advance online publication. https://doi.org/10.1080/10255842.2022.2034794[details]
Czaja, B., de Bouter, J., Heisler, M., Závodszky, G., Karst, S., Sarunic, M., Maberley, D., Hoekstra, A. & Sarunic, M. (2022). The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Taylor & Francis. https://doi.org/10.6084/m9.figshare.19228682.v1
Czaja, B., de Bouter, J., Heisler, M., Závodszky, G., Karst, S., Sarunic, M., Maberley, D., Hoekstra, A. & Sarunic, M. (2022). The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Taylor & Francis. https://doi.org/10.6084/m9.figshare.19228682.v1
Kimmerlin, Q., Moog, S., Yakusheva, A., Ziessel, C., Eckly, A., Freund, M., Závodszky, G., Knapp, Y., Mangin, P., & Lanza, F. (2022). Loss of α4A- and β1-tubulins leads to severe platelet spherocytosis and strongly impairs hemostasis in mice. Blood, 140(21), 2290-2299. https://doi.org/10.1182/blood.2022016729[details]
Padmos, R. M., Arrarte Terreros, N., Józsa, T. I., Závodszky, G., Marquering, H. A., Majoie, C. B. L. M., Payne, S. J., & Hoekstra, A. G. (2022). Modelling collateral flow and thrombus permeability during acute ischaemic stroke. Journal of the Royal Society Interface, 19(195), Article 20220649. https://doi.org/10.1098/rsif.2022.0649[details]
Yakusheva, A. A., Butov, K. R., Bykov, G. A., Závodszky, G., Eckly, A., Ataullakhanov, F. I., Gachet, C., Panteleev, M. A., & Mangin, P. H. (2022). Traumatic vessel injuries initiating hemostasis generate high shear conditions. Blood Advances, 6(16), 4834-4846. Advance online publication. https://doi.org/10.1182/bloodadvances.2022007550[details]
Kovalchuk, S. V., Krzhizhanovskaya, V. V., Paszyński, M., Závodszky, G., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2021). 20 years of computational science: Selected papers from 2020 International Conference on Computational Science. Journal of Computational Science, 53, Article 101395. https://doi.org/10.1016/j.jocs.2021.101395[details]
Padmos, R. M., Arrarte Terreros, N., Józsa, T. I., Závodszky, G., Marquering, H. A., Majoie, C. B. L. M., & Hoekstra, A. G. (2021). Modelling the leptomeningeal collateral circulation during acute ischaemic stroke. Medical Engineering and Physics, 91, 1-11. https://doi.org/10.1016/j.medengphy.2021.03.003[details]
Padmos, R. M., Józsa, T. I., El-Bouri, W. K., Závodszky, G., Payne, S. J., & Hoekstra, A. G. (2021). Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. III, pp. 670-683). (Lecture Notes in Computer Science; Vol. 12744). Springer. https://doi.org/10.1007/978-3-030-77967-2_56[details]
Spieker, C. J., Závodszky, G., Mouriaux, C., van der Kolk, M., Gachet, C., Mangin, P. H., & Hoekstra, A. G. (2021). The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion. Annals of Biomedical Engineering, 49(12), 3609–3620. Advance online publication. https://doi.org/10.1007/s10439-021-02870-4[details]
van Rooij, B. J. M., Závodszky, G., Hoekstra, A. G., & Ku, D. N. (2021). Haemodynamic flow conditions at the initiation of high-shear platelet aggregation: a combined in vitro and cellular in silico study. Interface Focus, 11(1), Article 20190126. Advance online publication. https://doi.org/10.1098/rsfs.2019.0126[details]
Csippa, B., Gyürki, D., Závodszky, G., Szikora, I., & Paál, G. (2020). Hydrodynamic Resistance of Intracranial Flow-Diverter Stents: Measurement Description and Data Evaluation. Cardiovascular Engineering and Technology, 11(1), 1-13. Advance online publication. https://doi.org/10.1007/s13239-019-00445-y[details]
Czaja, B., Gutierrez, M., Závodszky, G., de Kanter, D., Hoekstra, A., & Eniola-Adefeso, O. (2020). The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Computational Biology, 16(3), Article e1007716. https://doi.org/10.1371/journal.pcbi.1007716[details]
Czaja, B., Závodszky, G., & Hoekstra, A. (2020). A Heterogeneous Multi-scale Model for Blood Flow. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. VI, pp. 403-409). (Lecture Notes in Computer Science; Vol. 12142). Springer. https://doi.org/10.1007/978-3-030-50433-5_31[details]
Závodszky, G., Csippa, B., Paál, G., & Szikora, I. (2020). A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. International Journal for Numerical Methods in Biomedical Engineering, 36(6), Article e3340. https://doi.org/10.1002/cnm.3340[details]
de Vries, K., Nikishova, A., Czaja, B., Závodszky, G., & Hoekstra, A. G. (2020). Inverse Uncertainty Quantification of a cell model using a Gaussian Process metamodel. International Journal for Uncertainty Quantification, 10(4), 333-349. https://doi.org/10.1615/Int.J.UncertaintyQuantification.2020033186[details]
van Rooij, B. J. M., Závodszky, G., Hoekstra, A. G., & Ku, D. N. (2020). Biorheology of occlusive thrombi formation under high shear: in vitro growth and shrinkage. Scientific Reports, 10, Article 18604. https://doi.org/10.1038/s41598-020-74518-7[details]
Azizi Tarksalooyeh, V., Závodszky, G., & Hoekstra, A. G. (2019). Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. In J. M. F. Rodrigues, P. J. S. Cardoso, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2019: 19th International Conference, Faro, Portugal, June 12–14, 2019 : proceedings (Vol. III, pp. 537-547). (Lecture Notes in Computer Science; Vol. 11538). Springer. https://doi.org/10.1007/978-3-030-22744-9_42[details]
Berg, P., Voß, S., Janiga, G., Saalfeld, S., Bergersen, A. W., Valen-Sendstad, K., Bruening, J., Goubergrits, L., Spuler, A., Chiu, T. L., Tsang, A. C. O., Copelli, G., Csippa, B., Paál, G., Závodszky, G., Detmer, F. J., Chung, B. J., Cebral, J. R., Fujimura, S., ... Beuing, O. (2019). Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)—phase II: rupture risk assessment. International Journal of Computer Assisted Radiology and Surgery, 14(10), 1795–1804. Advance online publication. https://doi.org/10.1007/s11548-019-01986-2[details]
Závodszky, G., van Rooij, B., Czaja, B., Azizi, V., de Kanter, D., & Hoekstra, A. G. (2019). Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows. Physics of Fluids, 31(3), Article 031903. Advance online publication. https://doi.org/10.1063/1.5085881[details]
van Rooij, B. J. M., Závodszky, G., Azizi Tarksalooyeh, V. W., & Hoekstra, A. G. (2019). Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer. Journal of the Royal Society Interface, 16(159), Article 20190148. https://doi.org/10.1098/rsif.2019.0148[details]
Azizi Tarksalooyeh, V. W., Závodszky, G., van Rooij, B. J. M., & Hoekstra, A. G. (2018). Inflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method. Computers & fluids, 172, 312–317. Advance online publication. https://doi.org/10.1016/j.compfluid.2018.04.025[details]
Csippa, B., Závodszky, G., Paál, G., & Szikora, I. (2018). A new hypothesis on the role of vessel topology in cerebral aneurysm initiation. Computers in Biology and Medicine, 103, 244-251. Advance online publication. https://doi.org/10.1016/j.compbiomed.2018.10.018[details]
Czaja, B., Závodszky, G., Azizi Tarksalooyeh, V., & Hoekstra, A. G. (2018). Cell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio. Journal of the Royal Society Interface, 15(146), Article 20180485. Advance online publication. https://doi.org/10.1098/rsif.2018.0485[details]
Tan, J. S. Y., Závodszky, G., & Sloot, P. M. A. (2018). Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : Proceedings, Part I (pp. 392-403). (Lecture Notes in Computer Science; Vol. 10860). Springer. https://doi.org/10.1007/978-3-319-93698-7_30[details]
de Haan, M., Zavodszky, G., Azizi, V., & Hoekstra, A. G. (2018). Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour. Applied Sciences, 8(9), Article 1616. https://doi.org/10.3390/app8091616[details]
Závodszky, G., van Rooij, B., Azizi, V., & Hoekstra, A. (2017). Cellular Level In-silico Modeling of Blood Rheology with An Improved Material Model for Red Blood Cells. Frontiers in Physiology, 8, Article 563. https://doi.org/10.3389/fphys.2017.00563[details]
Hoekstra, A. G., Alowayyed, S., Lorenz, E., Melnikova, N., Mountrakis, L., van Rooij, B., Svitenkov, A., Závodszky, G., & Zun, P. (2016). Towards the virtual artery: a multiscale model for vascular physiology at the physics–chemistry–biology interface. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 374(2080), Article 20160146. https://doi.org/10.1098/rsta.2016.0146[details]
Jenei, C., Závodszky, G., Paál, G., Tar, B., & Kőszegi, Z. (2016). High shear stress on the background of clinical restenosis at the site of step-down phenomenon after drug eluting stent implantation. Cor et Vasa, 58(5), e518-e521. https://doi.org/10.1016/j.crvasa.2015.08.005
Závodszky, G., Joó-Kovács, R., Paál, G., & Szikora, I. (2016). Techniques to integrate patient-specific simulation of aneurysmal blood flow into the clinical workflow. In G. Stefanou, V. Papadopoulos, V. Plevris, & M. Papadrakakis (Eds.), ECCOMAS Congress 2016 - Proceedings of the 7th European Congress on Computational Methods in Applied Sciences and Engineering (pp. 147-154). (ECCOMAS Congress 2016 - Proceedings of the 7th European Congress on Computational Methods in Applied Sciences and Engineering; Vol. 1). National Technical University of Athens. https://doi.org/10.7712/100016.1799.9205
Závodszky, G., Károlyi, G., Szikora, I., & Paál, G. (2016). Fractals and Chaos in the Hemodynamics of Intracranial Aneurysms: The Fractal Geometry of the Brain. In A. Di Ieva (Ed.), The Fractal Geometry of the Brain (pp. 263-277). Springer New York. https://doi.org/10.1007/978-1-4939-3995-4_17
2015
Závodszky, G., & Paál, G. (2015). Numerical investigation of the hemostasis process in transient blood flow. Biomechanica Hungarica, 7(2), 22-28. https://doi.org/10.17489/biohun/2014/2/03
Závodszky, G., Károlyi, G., & Paál, G. (2015). Emerging fractal patterns in a real 3D cerebral aneurysm. Journal of Theoretical Biology, 368, 95-101. https://doi.org/10.1016/j.jtbi.2015.01.004
2014
Gábor, Z., & Paál, G. (2014). Numerical simulation of blood flow in large vessels during thrombus formation. Biomechanica Hungarica, 6(1), 273-280. https://doi.org/10.17489/biohun/2013/1/29
2013
Závodszky, G., & Paál, G. (2013). Validation of a lattice Boltzmann method implementation for a 3D transient fluid flow in an intracranial aneurysm geometry. International Journal of Heat and Fluid Flow, 44, 276-283. https://doi.org/10.1016/j.ijheatfluidflow.2013.06.008
2020
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12137). Springer. https://doi.org/10.1007/978-3-030-50371-0[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. II, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12138). Springer. https://doi.org/10.1007/978-3-030-50417-5[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. III, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12139). Springer. https://doi.org/10.1007/978-3-030-50420-5[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. IV, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12140). Springer. https://doi.org/10.1007/978-3-030-50423-6[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. V, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12141). Springer. https://doi.org/10.1007/978-3-030-50426-7[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. VI, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12142). Springer. https://doi.org/10.1007/978-3-030-50433-5[details]
Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. VII, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12143). Springer. https://doi.org/10.1007/978-3-030-50436-6[details]
2017
Azizi Tarksalooyeh, V. W., Závodszky, G., & Hoekstra, A. G. (2017). Inflow and outflow boundary conditions for suspension simulations with the lattice Boltzmann method.
Spreker
Závodszky, G. (invited speaker) (7-9-2021). Current scaling limits of a large-scale cellular blood flow simulation, International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, Bonn.
Závodszky, G. (invited speaker) (12-6-2020). A statistical mean-field model for bridging the scale gap between cell resolved and continuum blood flow mechanics, INTERNATIONAL CONFERENCE ON COMPUTATIONAL SCIENCE 2020, Amsterdam.
Závodszky, G. (invited speaker) (11-6-2020). A model to efficiently incorporate cellular transport effects in macroscopic blood flows, The 15th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease.
Závodszky, G. (invited speaker) (26-9-2019). Multi-Scale Investigation of High Shear Rate Thrombus Formation, CompBioMed Conference 2019, London.
Závodszky, G. (invited speaker) (17-12-2018). How do Red Blood Cells and Platelets move in our Arteries? The circulatory system of the Virtual Human, Super Day 2018, Amsterdam.
Závodszky, G. (keynote speaker) (18-10-2017). Blood flow simulations: what have we learned recently?, 14th Congress of the World Federation of Interventional and Therapeutic Neuroradiology, Budapest.
Závodszky, G. (speaker) (17-10-2017). Fast patient-specific flow diverter simulation, 14th Congress of the World Federation of Interventional and Therapeutic Neuroradiology, Budapest.
Závodszky, G. (speaker) (11-7-2017). Improving the performance of a dense cellular modelling framework, 26th International Conference on Discrete Simulation of Fluid Dynamics , Erlangen.
Závodszky, G. (speaker) (12-4-2017). A cell-based framework for blood flow modelling, 5th International Conference on Computational and Mathematical Biomedical Engineering, Pittsburg.
Závodszky, G. (invited speaker) (17-2-2017). In-silico thrombus formation, international NeurovascularExploratoryWorkshop(iNEW), Zurich.
2024
Spieker, C. J. (2024). Platelet aggregation in complex vessel geometries: An in silico study on cellular blood flow mechanics. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Padmos, R. M. (2022). Modelling cerebral blood flow and perfusion during acute ischaemic stroke. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Czaja, B. E. (2020). Cell resolved blood flow modeling with the Lattice Boltzmann method: Cell deformability and transport in diseases. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
van Rooij, B. J. M. (2020). Platelet adhesion and aggregation in high shear blood flow: An in silico and in vitro study. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Pringle, G., Hachinger, S., Hayek, M., Křenek, J., Závodszky, G., Martinovič, J., Golasowski, M. & Foltyn, L. (16-4-2024). Additional Artifacts - Supplements to: A Resilient Workflow to Control a Biomedical HPC Simulation in an Urgent Computing Setting. Zenodo. https://doi.org/10.5281/zenodo.10966168
2022
Czaja, B., de Bouter, J., Heisler, M., Závodszky, G., Karst, S., Sarunic, M., Maberley, D., Hoekstra, A. & Sarunic, M. (2022). The effect of stiffened diabetic red blood cells on wall shear stress in a reconstructed 3D microaneurysm. Taylor & Francis. https://doi.org/10.6084/m9.figshare.19228682.v1
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