Stal, L. J., Bolhuis, H., & Cretoiu, M. S. (2019). Phototrophic marine benthic microbiomes: The ecophysiology of these biological entities. Environmental Microbiology, 21(5), 1529-1551. https://doi.org/10.1111/1462-2920.14494[details]
2018
Bale, N. J., Hopmans, E. C., Dorhout, D., Stal, L. J., Grego, M., van Bleijswijk, J., Sinninghe Damsté, J. S., & Schouten, S. (2018). A novel heterocyst glycolipid detected in a pelagic N2-fixing cyanobacterium of the genus Calothrix. Organic Geochemistry, 123, 44-47. https://doi.org/10.1016/j.orggeochem.2018.06.009
Hedayatkhah, A., Cretoiu, M. S., Emtiazi, G., Stal, L. J., & Bolhuis, H. (2018). Bioremediation of chromium contaminated water by diatoms with concomitant lipid accumulation for biofuel production. Journal of Environmental Management, 227, 313-320. https://doi.org/10.1016/j.jenvman.2018.09.011[details]
Hörnlein, C., Confurius-Guns, V., Stal, L. J., & Bolhuis, H. (2018). Daily rhythmicity in coastal microbial mats. npj Biofilms and Microbiomes, 4, Article 11. https://doi.org/10.1038/s41522-018-0054-5[details]
Ismail, A., Ktari, L., Ahmed, M., Bolhuis, H., Bouhaouala-Zahar, B., Stal, L. J., Boudabbous, A., & El Bour, M. (2018). Heterotrophic bacteria associated with the green alga Ulva rigida identification and antimicrobial potential. Journal of applied phycology, 30(5), 2883-2899. https://doi.org/10.1007/s10811-018-1454-x[details]
Moerdijk-Poortvliet, T. C. W., Beauchard, O., Stal, L. J., & Boschker, H. T. S. (2018). Production and consumption of extracellular polymeric substances in an intertidal diatom mat. Marine Ecology Progress Series, 592, 77-95. https://doi.org/10.3354/meps12481[details]
Moerdijk-Poortvliet, T. C. W., van Breugel, P., Sabbe, K., Beauchard, O., Stal, L. J., & Boschker, H. T. S. (2018). Seasonal changes in the biochemical fate of carbon fixed by benthic diatoms in intertidal sediments. Limnology and Oceanography, 63(2), 550-569. https://doi.org/10.1002/lno.10648[details]
Cardoso, D. C., Sandionigi, A., Cretoiu, M. S., Casiraghi, M., Stal, L., & Bolhuis, H. (2017). Comparison of the active and resident community of a coastal microbial mat. Scientific Reports, 7, Article 2969. https://doi.org/10.1038/s41598-017-03095-z[details]
Stal, L. J. (2017). The effect of oxygen concentration and temperature on nitrogenase activity in the heterocystous cyanobacterium Fischerella sp. Scientific Reports, 7(1), Article 5402. https://doi.org/10.1038/s41598-017-05715-0
2016
Ismail, A., Ktari, L., Ahmed, M., Bolhuis, H., Boudabbous, A., Stal, L. J., Cretoiu, M. S., & El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Frontiers in Microbiology, 7, Article 1072. https://doi.org/10.3389/fmicb.2016.01072[details]
Visser, P. M., Verspagen, J. M. H., Sandrini, G., Stal, L. J., Matthijs, H. C. P., Davis, T. W., Paerl, H. W., & Huisman, J. (2016). How rising CO2 and global warming may stimulate harmful cyanobacterial blooms. Harmful Algae, 54, 145-159. https://doi.org/10.1016/j.hal.2015.12.006[details]
2015
Brauer, V. S., Stomp, M., Bouvier, T., Fouilland, E., Leboulanger, C., Confurius-Guns, V., Weissing, F. J., Stal, L. J., & Huisman, J. (2015). Competition and facilitation between the marine nitrogen-fixing cyanobacterium Cyanothece and its associated bacterial community. Frontiers in Microbiology, 5, Article 795. https://doi.org/10.3389/fmicb.2014.00795[details]
Fan, H., Bolhuis, H., & Stal, L. J. (2015). Denitrification and the denitrifier community in a coastal microbial mats. FEMS Microbiology Ecology, 91(3), Article fiu033. Advance online publication. https://doi.org/10.1093/femsec/fiu033[details]
Fan, H., Bolhuis, H., & Stal, L. J. (2015). Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments. Frontiers in Microbiology, 6, Article 738. https://doi.org/10.3389/fmicb.2015.00738[details]
Fan, H., Bolhuis, H., & Stal, L. J. (2015). Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat. Frontiers in Microbiology, 6, Article 1367. https://doi.org/10.3389/fmicb.2015.1367[details]
Herman, P., Warwick, R., Aller, R., Arvanitidis, C., Hewitt, J., Stal, L., & Vincx, M. (2015). Protecting marine biodiversity to preserve ecosystem functioning: A tribute to Carlo Heip. Journal of Sea Research, 98, 1-3. https://doi.org/10.1016/j.seares.2015.03.003[details]
Javaheri, N., Dries, R., Burson, A., Stal, L. J., Sloot, P. M. A., & Kaandorp, J. A. (2015). Temperature affects the silicate morphology in a diatom. Scientific Reports, 5, Article 11652. https://doi.org/10.1038/srep11652[details]
Moerdijk-Poortvliet, T. C. W., Schierbeek, H., Houtekamer, M., van Engeland, T., Derrien, D., Stal, L. J., & Boschker, H. T. S. (2015). Comparison of gas chromatography/isotope ratio mass spectrometry and liquid chromatography/isotope ratio mass spectrometry for carbon stable-isotope analysis of carbohydrates. Rapid Communications in Mass Spectrometry, 29(13), 1205-1214. https://doi.org/10.1002/rcm.7217[details]
Stal, L. J. (2015). Cyanobacteria, Diversity and evolution of. In M. Gargaud, & W. M. Irvine (Eds.), Encyclopedia of Astrobiology. - Second Edition (pp. 595-599). Springer Reference. https://doi.org/10.1007/978-3-662-44185-5_379[details]
Agawin, N. S. R., Benavides, M., Busquets, A., Ferriol, P., Stal, L. J., & Arístegui, J. (2014). Dominance of unicellular cyanobacteria in the diazotrophic community in the Atlantic Ocean. Limnology and Oceanography, 59(3), 623-637. https://doi.org/10.4319/lo.2014.59.2.0623[details]
Ahmed, M., Moerdijk-Poortvliet, T. C. W., Wijnholds, A., Stal, L. J., & Hasnain, S. (2014). Isolation, characterization and localization of extracellular polymeric substances from the cyanobacterium Arthrospira platensis strain MMG-9. European Journal of Phycology, 49(2), 143-150. https://doi.org/10.1080/09670262.2014.895048[details]
Ahmed, M., Stal, L. J., & Hasnain, S. (2014). Biofilm formation and indole-3-acetic acid production by two rhizospheric unicellular cyanobacteria. Journal of Microbiology and Biotechnology, 24(8), 1015-1025. https://doi.org/10.4014/jmb.1310.10099[details]
Ahmed, M., Stal, L. J., & Hasnain, S. (2014). The morphology and bioactivity of the rice field cyanobacterium Leptolyngbya. Revista de Biología Tropical, 62(3), 1251-1260. http://www.redalyc.org/pdf/449/44932441033.pdf[details]
Bale, N. J., Villanueva, L., Fan, H., Stal, L. J., Hopmans, E. C., Schouten, S., & Sinninghe Damsté, J. S. (2014). Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea. FEMS Microbiology Ecology, 89(1), 99-110. https://doi.org/10.1111/1574-6941.12338[details]
Bauersachs, T., Stal, L. J., Grego, M., & Schwark, L. (2014). Temperature induced changes in the heterocyst glycolipid composition of N2-fixing heterocystous cyanobacteria. Organic Geochemistry, 69, 98-105. https://doi.org/10.1016/j.orggeochem.2014.02.006[details]
Miyatake, T., Moerdijk-Poortvliet, T. C. W., Stal, L. J., & Boschker, H. T. S. (2014). Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method. Limnology and Oceanography, 59(4), 1275-1287. https://doi.org/10.4319/lo.2014.59.4.1275[details]
Moerdijk-Poortvliet, T. C. W., Brasser, J., de Ruiter, G., Houtekamer, M., Bolhuis, H., Stal, L. J., & Boschker, H. T. S. (2014). A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry. Rapid Communications in Mass Spectrometry, 28(12), 1401-1411. https://doi.org/10.1002/rcm.6919[details]
Moerdijk-Poortvliet, T. C. W., Stal, L. J., & Boschker, H. T. S. (2014). LC/IRMS analysis: A powerful technique to trace carbon flow in microphytobenthic communities in intertidal sediments. Journal of Sea Research, 92, 19-25. https://doi.org/10.1016/j.seares.2013.10.002[details]
Schuurmans, R. M., Matthijs, H. C. P., Stal, L. J., & Hellingwerf, K. J. (2014). Cyanobacterial cellulose synthesis in the light of the photanol concept. In N. K. Sharma, A. K. Rai, & L. J. Stal (Eds.), Cyanobacteria: an economic perspective (pp. 181-196). Wiley Blackwell. https://doi.org/10.1002/9781118402238.ch11[details]
Sharma, N. K., & Stal, L. J. (2014). The economics of cyanobacteria-based biofuel production: challenges and opportunities. In N. K. Sharma, A. K. Rai, & L. J. Stal (Eds.), Cyanobacteria: an economic perspective (pp. 167-180). Wiley Blackwell. https://doi.org/10.1002/9781118402238.ch10[details]
Sharma, N. K., Rai, A. K., & Stal, L. J. (2014). Introduction. In N. K. Sharma, A. K. Rai, & L. J. Stal (Eds.), Cyanobacteria: an economic perspective (pp. xxi-xxiv). Wiley Blackwell. https://doi.org/10.1002/9781118402238.fmatter[details]
den Haan, J., Visser, P. M., Ganase, A. E., Gooren, E. E., Stal, L. J., van Duyl, F. C., Vermeij, M. J. A., & Huisman, J. (2014). Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef. Coral reefs, 33(4), 1003-1015. https://doi.org/10.1007/s00338-014-1207-5[details]
2013
Benavides, M., Agawin, N. S. R., Arístegui, J., Peene, J., & Stal, L. J. (2013). Dissolved organic nitrogen and carbon release by a marine unicellular diazotrophic cyanobacterium. Aquatic Microbial Ecology, 69(1), 69-80. https://doi.org/10.3354/ame01621[details]
Brauer, V. S., Stomp, M., Rosso, C., van Beusekom, S. A. M., Emmerich, B., Stal, L. J., & Huisman, J. (2013). Low temperature delays timing and enhances the cost of nitrogen fixation in the unicellular cyanobacterium Cyanothece. The ISME Journal, 7, 2105-2115. Advance online publication. https://doi.org/10.1038/ismej.2013.103[details]
Stal, L. J. (2013). Environmental factors regulating nitrogen fixation in heterocystous and non-heterocystous cuanobacteria. In A. K. Srivastava, A. N. Rai, & B. A. Neilan (Eds.), Stress Biology of Cyanobacteria : Molecular Mechanisms to Cellular Responses (pp. 291-306). CRC Press. https://doi.org/10.1201/b13853-18[details]
Voß, B., Bolhuis, H., Fewer, D., Kopf, M., Möke, F., Haas, F., El-Shehawy, R., Hayes, P., Bergman, B., Sivonen, K., Dittmann, E., Scanlan, D. J., Hagemann, M., Stal, L. J., & Hess, W. R. (2013). Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium Nodularia spumigena sp. CCY9414 based on a genome-transcriptome analysis. PLoS ONE, 8(3), e60224. https://doi.org/10.1371/journal.pone.0060224[details]
Ismail-Ben Ali, A., El Bour, M., Ktari, L., Bolhuis, H., Ahmed, A., Boudabbous, A., & Stal, L. J. (2012). Jania rubens-associated bacteria: molecular identification and antimicrobial activity. Journal of applied phycology, 24(3), 525-534. https://doi.org/10.1007/s10811-011-9758-0[details]
Pade, N., Compaoré, J., Klähn, S., Stal, L. J., & Hagemann, M. (2012). The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein. Environmental Microbiology, 14(5), 1261-1271. https://doi.org/10.1111/j.1462-2920.2012.02709.x[details]
Pfreundt, U., Stal, L. J., Voss, B., & Hess, W. R. (2012). Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium. The ISME Journal, 6, 1367-1377. https://doi.org/10.1038/ismej.2011.199[details]
Severin, I., Confurius-Guns, V., & Stal, L. J. (2012). Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats. Archives of Microbiology, 194(6), 483-491. https://doi.org/10.1007/s00203-011-0787-5[details]
Stal, L. J. (2012). Cyanobacterial mats and stromatolites. In B. A. Whitton (Ed.), Ecology of cyanobacteria II: their diversity in space and time (pp. 65-125). Springer. https://doi.org/10.1007/978-94-007-3855-3_4[details]
2011
Agawin, N. S. R., Tovar-Sanchez, A., Stal, L. J., Alvarez, M., Agustí, S., & Duarte, C. M. (2011). Low water column nitrogen fixation in the Mediterranean Sea: basin-wide experimental evidence. Aquatic Microbial Ecology, 64, 135-147. https://doi.org/10.3354/ame01511[details]
Ahmed, M., Stal, L. J., & Hasnain, S. (2011). DTAF: an efficient probe to study cyanobacterial-plant interaction using confocal laser scanning microscopy (CLSM). Journal of industrial microbiology & biotechnology, 38, 249-255. https://doi.org/10.1007/s10295-010-0820-8[details]
Bauersachs, T., Compaoré, J., Severin, I., Hopmans, E. C., Schouten, S., Stal, L. J., & Sinninghe Damsté, J. S. (2011). Diazotrophic microbial community of coastal microbial mats of the southern North Sea. Geobiology, 9(4), 349-359. https://doi.org/10.1111/j.1472-4669.2011.00280.x[details]
Benavides, M., Agawin, N. S. R., Arístegui, J., Ferriol, P., & Stal, L. J. (2011). Nitrogen fixation by Trichodesmium and small diazotrophs in the subtropical northeast Atlantic. Aquatic Microbial Ecology, 65, 43-53. https://doi.org/10.3354/ame01534[details]
Bolhuis, H., & Stal, L. J. (2011). Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing. The ISME Journal, 5, 1701-1712. https://doi.org/10.1038/Ismej.2011.52[details]
Hackenberg, C., Kern, R., Hüge, J., Stal, L. J., Tsuji, Y., Kopka, J., Shiraiwa, Y., Bauwe, H., & Hagemann, M. (2011). Cyanobacterial lactate oxidases serve as essential partners in N2-fixation and evolved into photorespiratory glycolate oxidases in plants. The Plant Cell, 23(8), 2978-2990. https://doi.org/10.1105/tpc.111.088070[details]
Stal, L. J. (2011). Biopolymer. In M. Gargaud (Ed.), Encyclopedia of Astrobiology (pp. 199-200). Springer Verlag. [details]
Stal, L. J. (2011). Cyanobacteria, Diversity and evolution of. In M. Gargaud (Ed.), Encyclopedia of Astrobiology (pp. 397-401). Springer Verlag. [details]
Stal, L. J. (2011). Exopolymers. In M. Gargaud (Ed.), Encyclopedia of Astrobiology (pp. 555-556). Springer Verlag. [details]
Amaral- Zettler, L., Artigas, L. F., Baross, J., Loka Bharathi, P. A., Boetius, A., Chandramohan, D., Herndl, G., Kogure, K., Neal, P., Pedrós-Alió, C., Ramette, A., Schouten, S., Stal, L., Thessen, A., de Leeuw, J., & Sogin, M. (2010). A global census of marine microbes. In A. D. McIntyre (Ed.), Life in the world's oceans: diversity, distribution, and abundance (pp. 223-246). Wiley-Blackwell. https://doi.org/10.1002/9781444325508.ch12[details]
Bauersachs, T., Schouten, S., Compaoré, J., Stal, L. J., & Sinninghe Damsté, J. S. (2010). Occurrence of C35-C45 polyprenols in filamentous and unicellular cyanobacteria. Organic Geochemistry, 41(9), 867-870. https://doi.org/10.1016/j.orggeochem.2010.04.018[details]
Bolhuis, H., Severin, I., Confurius-Guns, V., Wollenzien, U. I. A., & Stal, L. J. (2010). Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes. The ISME Journal, 4(1), 121-130. https://doi.org/10.1038/ismej.2009.99[details]
Dijkman, N. A., Boschker, H. T. S., Stal, L. J., & Kromkamp, J. C. (2010). Composition and heterogeneity of the microbial community in a coastal microbial mat as revealed by the analysis of pigments and phospholipid-derived fatty acids. Journal of Sea Research, 63(1), 62-70. https://doi.org/10.1016/j.seares.2009.10.002[details]
Mehboob, A., Stal, L. J., & Hasnain, S. (2010). Production of indole-3-acetic acid by the cyanobacterium Arthrospira platensis strain MMG-9. Journal of Microbiology and Biotechnology, 20(9), 1259-1265. https://doi.org/10.4014/jmb.1004.04033[details]
Severin, I., & Stal, L. J. (2010). Diazotrophic microbial mats. In J. Seckbach, & A. Oren (Eds.), Microbial mats: modern and ancient microorganisms in stratified systems (pp. 321-339). (Cellular origin, life in extreme habitats and astrobiology; No. 14). Springer. https://doi.org/10.1007/978-90-481-3799-2_17[details]
Severin, I., & Stal, L. J. (2010). NifH expression by five groups of phototrophs compared with nitrogenase activity in coastal microbial mats. FEMS Microbiology Ecology, 73(1), 55-67. https://doi.org/10.1111/j.1574-6941.2010.00875.x[details]
Severin, I., & Stal, L. J. (2010). Spatial and temporal variability in nitrogenase activity and diazotrophic community composition in coastal microbial mats. Marine Ecology - Progress Series, (417), 13-25. https://doi.org/10.3354/meps08759[details]
Severin, I., & Stal, L. J. (2010). Temporal and spatial variability of nifH expression in three filamentous Cyanobacteria in coastal microbial mats. Aquatic Microbial Ecology, 60(1), 59-70. https://doi.org/10.3354/ame01405[details]
Stal, L. J., Severin, I., & Bolhuis, H. (2010). The ecology of nitrogen fixation in cynobacterial mats. In P. C. Hallenbeck (Ed.), Recent advances in phototrophic prokaryotes (pp. 31-45). (Advances in experimental medicine and biology; No. 675). Springer. https://doi.org/10.1007/978-1-4419-1528-3_3[details]
2009
Acinas, S. G., Haverkamp, T. H. A., Huisman, J., & Stal, L. J. (2009). Phenotypic and genetic diversification of Pseudanabaena spp. (cyanobacteria). The ISME Journal, 3(1), 31-46. https://doi.org/10.1038/ismej.2008.78[details]
Bauersachs, T., Compaoré, J., Hopmans, E. C., Stal, L. J., Schouten, S., & Sinninghe Damsté, J. S. (2009). Distribution of heterocyst glycolipids in cyanobacteria. Phytochemistry, 70(17-18), 2034-2039. https://doi.org/10.1016/j.phytochem.2009.08.014[details]
Bauersachs, T., Hopmans, E. C., Compaoré, J., Stal, L. J., Schouten, S., & Sinninghe Damsté, J. S. (2009). Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 23(9), 1387-1394. https://doi.org/10.1002/rcm.4009[details]
Bauersachs, T., Schouten, S., Compaoré, J., Wollenzien, U., Stal, L. J., & Sinninghe Damsté, J. S. (2009). Nitrogen isotopic fractionation associated with growth on dinitrogen gas and nitrate by cyanobacteria. Limnology and Oceanography, 54(4), 1403-1411. https://doi.org/10.4319/lo.2009.54.4.1403[details]
Ferreira, D., Stal, L. J., Moradas-Ferreira, P., Mendes, M. V., & Tamagnini, P. (2009). The relation between N2 fixation and H2 metabolism in the marine filamentous nonheterocystous cyanobacterium Lyngbya aestuarii CCY 9616. Journal of phycology, 45(4), 898-905. https://doi.org/10.1111/j.1529-8817.2009.00714.x[details]
Fewer, D. P., Jokela, J., Rouhiainen, L., Wahlsten, M., Koskenniemi, K., Stal, L. J., & Sivonen, K. (2009). The non-ribosomal assembly and frequent occurrence of the protease inhibitors spumigins in the bloom-forming cyanobacterium Nodularia spumigena. Molecular Microbiology, 73(5), 924-937. https://doi.org/10.1111/j.1365-2958.2009.06816.x[details]
Haverkamp, T. H. A., Schouten, D., Doeleman, M., Wollenzien, U., Huisman, J., & Stal, L. J. (2009). Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea. The ISME Journal, 3(4), 397-408. https://doi.org/10.1038/ismej.2008.118[details]
Vanelslander, B., Créach, V., Vanormelingen, P., Ernst, A., Chepurnov, V. A., Sahan, E., Muijzer, G., Stal, L. J., Vyverman, W., & Sabbe, K. (2009). Ecological differentiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae). Journal of phycology, 45(6), 1278-1289. https://doi.org/10.1111/j.1529-8817.2009.00762.x[details]
2008
Haverkamp, T., Acinas, S. G., Doeleman, M., Stomp, M., Huisman, J., & Stal, L. J. (2008). Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons. Environmental Microbiology, 10(1), 174-188. https://doi.org/10.1111/j.1462-2920.2007.01442.x[details]
Kremer, B., Kazmierczak, J., & Stal, L. J. (2008). Calcium carbonate precipitation in cyanobacterial mats from sandy tidal flats of the North Sea. Geobiology, 6(1), 46-56. https://doi.org/10.1111/j.1472-4669.2007.00128.x[details]
Severin, I., & Stal, L. J. (2008). Light dependency of nitrogen fixation in a coastal cyanobacterial mat. The ISME Journal, 2(10), 1077-1088. https://doi.org/10.1038/ismej.2008.63[details]
Stal, L. J., & Zehr, J. P. (2008). Cyanobacterial nitrogen fixation in the ocean : diversity, regulation and ecology. In A. Herrero, & E. Flores (Eds.), The cyanobacteria: molecular biology, genomics and evolution (pp. 423-446). Caister Academic. [details]
Stal, L. J. (2011). Mariene microbiologie. Een zee van bacteriën. In H. Smit, J. van Doorn, J. van der Oost, W. Reijnders, & P. Willemsen (Eds.), Wat je beslist moet weten over microbiologie. De wetenschappelijke bibliotheek. (pp. 17-20). Diemen: Veen Magazines.
2017
Schuurmans, R. M. (2017). Physiological and genetic studies towards biofuel production in cyanobacteria. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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