Prof. dr. P.M.A. (Peter) Sloot

Professor of Complex Adaptive Systems

Faculteit der Natuurwetenschappen, Wiskunde en Informatica

Informatics Institute

Fotograaf: Teska Overbeeke

Bezoekadres

Science Park 900

Postadres

Postbus 94323
1090 GH Amsterdam

Contactgegevens

P.M.A.Sloot@uva.nl

Social media

Prof. Dr. P.M.A. Sloot
Publicaties
2022

Huth, K. B. S., Finnemann, A., van den Ende, M. W. J., & Sloot, P. M. A. (2022). No robust relation between larger cities and depression. Proceedings of the National Academy of Sciences of the United States of America, 119(2), Article e2118943118. Advance online publication. https://doi.org/10.1073/pnas.2118943118 [details]
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van den Ende, M. W. J., Epskamp, S., Lees, M. H., van der Maas, H. L. J., Wiers, R. W., & Sloot, P. M. A. (2022). A review of mathematical modeling of addiction regarding both (neuro-) psychological processes and the social contagion perspectives. Addictive Behaviors, 127, Article 107201. Advance online publication. https://doi.org/10.1016/j.addbeh.2021.107201 [details]
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2021

Dutta, P., Quax, R., Crielaard, L., Badiali, L., & Sloot, P. M. A. (2021). Inferring temporal dynamics from cross-sectional data using Langevin dynamics. Royal Society Open Science, 8(11), Article 211374. https://doi.org/10.1098/rsos.211374 [details]
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Presbitero, A., Melnikov, V. R., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2021). A unifying model to estimate the effect of heat stress in the human innate immunity during physical activities. Scientific Reports, 11, Article 16688. https://doi.org/10.1038/s41598-021-96191-0 [details]
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van der Wal, J., van Borkulo, C. D., Deserno, M. K., Breedvelt, J. J. F., Lees, M., Lokman, J. C., Borsboom, D., Denys, D., van Holst, R. J., Smidt, M. P., Stronks, K., Lucassen, P. J., van Weert, J. C. M., Sloot, P. M. A., Bockting, C. L., & Wiers, R. W. (2021). Advancing urban mental health research: from complexity science to actionable targets for intervention. The Lancet. Psychiatry, 8(11), 991-1000. https://doi.org/10.1016/S2215-0366(21)00047-X [details]
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PIIS221503662100047X-1
Supplementary files
1-s2.0-S221503662100047X-mmc1

2020

Crielaard, L., Dutta, P., Quax, R., Nicolaou, M., Merabet, N., Stronks, K., & Sloot, P. M. A. (2020). Social norms and obesity prevalence: From cohort to system dynamics models. Obesity Reviews, 21(9), Article e13044. Advance online publication. https://doi.org/10.1111/obr.13044 [details]
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obr.13044
Supplementary files
obr13044-sup-0001-supporting information

Har-Shemesh, O., Quax, R., Lansing, J. S., & Sloot, P. M. A. (2020). Questionnaire data analysis using information geometry. Scientific Reports, 10, Article 8633. https://doi.org/10.1038/s41598-020-63760-8 [details]
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s41598-020-63760-8
Supplementary files
41598 2020 63760 MOESM1 ESM

Sheraton, M. V., Chiew, G. G. Y., Melnikov, V., Tan, E. Y., Luo, K. Q., Verma, N., & Sloot, P. M. A. (2020). Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies. BMC Cancer, 20, Article 1201. https://doi.org/10.1186/s12885-020-07677-5 [details]
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2019

Olde Rikkert, M. G. M., van Zuijlen, P. P. M., de Kleuver, M., van Reekum, A., Hoekstra, A. G., & Sloot, P. M. A. (2019). Complexiteit van ziekten: Een moderne visie in tijden van vergrijzing en multimorbiditeit. Nederlands Tijdschrift voor Geneeskunde, 163(35), Article D3970. Advance online publication. https://www.ntvg.nl/artikelen/complexiteit-van-ziekten [details]
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2018

Presbitero, A., Mancini, E., Brands, R., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2018). Supplemented alkaline phosphatase supports the immune response in patients undergoing cardiac surgery: Clinical and computational evidence. Frontiers in Immunology, 9, Article 2342. https://doi.org/10.3389/fimmu.2018.02342 [details]
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fimmu-09-02342
Supplementary files
Data Sheet 1 Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery Clinical and Computational Evidence

Quax, R., Chliamovitch, G., Dupuis, A., Falcone, J-L., Chopard, B., Hoekstra, A. G., & Sloot, P. M. A. (2018). Information processing features can detect behavioral regimes of dynamical systems. Complexity, 2018, Article 6047846. https://doi.org/10.1155/2018/6047846 [details]
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Roy, D., Lees, M. H., Pfeffer, K., & Sloot, P. M. A. (2018). Spatial segregation, inequality, and opportunity bias in the slums of Bengaluru. Cities : The International Journal of Urban Policy and Planning, 74, 269-276. Advance online publication. https://doi.org/10.1016/j.cities.2017.12.014 [details]

2017

Car, J., Tan, W. S., Huang, Z., Sloot, P., & Franklin, B. D. (2017). eHealth in the future of medications management: personalisation, monitoring and adherence. BMC Medicine, 15, Article 73. https://doi.org/10.1186/s12916-017-0838-0 [details]
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Quax, R., Har-Shemesh, O., & Sloot, P. M. A. (2017). Quantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy, 19(2), Article 85. https://doi.org/10.3390/e19020085 [details]
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2016

Har-Shemesh, O., Quax, R., Miñano, B., Hoekstra, A. G., & Sloot, P. M. A. (2016). Nonparametric estimation of Fisher information from real data. Physical Review E, 93(2), Article 023301. https://doi.org/10.48550/arXiv.1507.00964, https://doi.org/10.1103/PhysRevE.93.023301 [details]
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Non-parametric estimation of Fisher information fr
PhysRevE.93

2015

Mei, S., Zarrabi, N., Lees, M., & Sloot, P. M. A. (2015). Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing, 37, 311-321. Advance online publication. https://doi.org/10.1016/j.asoc.2015.08.010 [details]

Merelli, E., Rucco, M., Sloot, P., & Tesei, L. (2015). Topological Characterization of Complex Systems: Using Persistent Entropy. Entropy, 17(10), 6872-6892. https://doi.org/10.3390/e17106872 [details]
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2014

Bui, Q. C., Sloot, P. M. A., van Mulligen, E. M., & Kors, J. A. (2014). A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics, 30(23), 3365-3371. Advance online publication. https://doi.org/10.1093/bioinformatics/btu557 [details]
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Dijkstra, L. J., Yakushev, A. V., Duijn, P. A. C., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Inference of the Russian drug community from one of the largest social networks in the Russian Federation. Quality and Quantity, 48(5), 2739-2755. Advance online publication. https://doi.org/10.1007/s11135-013-9921-6 [details]

Duijn, P. A. C., Kashirin, V., & Sloot, P. M. A. (2014). The Relative Ineffectiveness of Criminal Network Disruption. Scientific Reports, 4, Article 4238. https://doi.org/10.1038/srep04238 [details]
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srep04238
Supplementary files
SI: Properties of hard- and soft- datasets used in this study

2013

Adamatzky, A., Lees, M., & Sloot, P. (2013). Bio-development of motorway networks in the Netherlands: a slime mould approach. Advances in Complex Systems, 16(02n03), 2326-0386. Article 1250034. Advance online publication. https://doi.org/10.1142/S0219525912500348 [details]

Czaplicka, A., Holyst, J. A., & Sloot, P. M. A. (2013). Noise enhances information transfer in hierarchical networks. Scientific Reports, 3, Article 1223. https://doi.org/10.1038/srep01223 [details]
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Quax, R., Apolloni, A., & Sloot, P. M. A. (2013). The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface, 10(88), 20130568. Article 20130568. Advance online publication. https://doi.org/10.1098/rsif.2013.0568 [details]
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Quax, R., Apolloni, A., & Sloot, P. M. A. (2013). Towards understanding the behavior of physical systems using information theory. The European Physical Journal - Special Topics, 222(6), 1389-1401. https://doi.org/10.1140/epjst/e2013-01933-9 [details]

Quax, R., Kandhai, D., & Sloot, P. M. A. (2013). Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series. Scientific Reports, 3, Article 1898. https://doi.org/10.1038/srep01898 [details]
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Toth, N., Gulyas, L., Legendi, R. O., Duijn, P., Sloot, P. M. A., & Kampis, G. (2013). The importance of centralities in dark network value chains. The European Physical Journal - Special Topics, 222(6), 1413-1439. https://doi.org/10.1140/epjst/e2013-01935-7 [details]

2012

Adamatzky, A., Lees, M., & Sloot, P. M. A. (2012). Physarum in the Netherlands: responding to the flood. In A. Adamatzky (Ed.), Bioevaluation of world transport networks (pp. 213-234). World Scientific. http://www.worldscibooks.com/chaos/8482.html [details]

Mancini, E., Gastiglione, F., Bernaschi, M., de Luca, A., & Sloot, P. M. A. (2012). HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: a computational study. PLoS ONE, 7(4), Article e36108. https://doi.org/10.1371/journal.pone.0036108 [details]
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Zarrabi, N., Prosperi, M., Belleman, R. G., Colafigli, M., De Luca, A., & Sloot, P. M. A. (2012). Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission. PLoS ONE, 7(9), e46156. https://doi.org/10.1371/journal.pone.0046156 [details]
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2011

Mei Shan, A., Quax, R., van de Vijver, D., Zhu, Y., & Sloot, P. M. A. (2011). Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases, 11(118). https://doi.org/10.1186/1471-2334-11-118 [details]
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2010

Bui, Q. C., Ó Nualláin, B., Boucher, C. A., & Sloot, P. M. A. (2010). Extracting causal relations on HIV drug resistance from literature. BMC Bioinformatics, 11, 101. https://doi.org/10.1186/1471-2105-11-101 [details]
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Frentz, D., Boucher, C. A. B., Assel, M., De Luca, A., Fabbiani, M., Incardona, F., Libin, P., Manca, N., Müller, V., Ó Nualláin, B., Paredes, R., Prosperi, M., Quiros-Roldan, E., Ruiz, L., Sloot, P. M. A., Torti, C., Vandamme, A-M., Van Laethem, K., Zazzi, M., & van de Vijver, D. A. M. C. (2010). Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time. PLoS ONE, 5(7), e11505. https://doi.org/10.1371/journal.pone.0011505 [details]
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Jaeger, S., Ertaylan, G., van Dijk, D., Leser, U., & Sloot, P. (2010). Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PLoS ONE, 5(10), e13139. https://doi.org/10.1371/journal.pone.0013139 [details]
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Mei, S., Sloot, P. M. A., Quax, R., Zhu, Y., & Wang, W. (2010). Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation, 80(5), 1018-1030. https://doi.org/10.1016/j.matcom.2009.12.008 [details]

Prosperi, M. C. F., Rosen-Zvi, M., Altman, A., Zazzi, M., Di Giambenedetto, S., Kaiser, R., Schülter, E., Struck, D., Sloot, P., van de Vijver, D. A., Vandamme, A-M., & Sönnerborg, A. (2010). Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models. PLoS ONE, 5(10), e13753. https://doi.org/10.1371/journal.pone.0013753 [details]
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Sloot, P. M. A., & Hoekstra, A. G. (2010). Multi-scale modelling in computational biomedicine. Briefings in Bioinformatics, 11(1), 142-152. https://doi.org/10.1093/bib/bbp038 [details]
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Sottoriva, A., Sloot, P. M. A., Medema, J. P., & Vermeulen, L. (2010). Exploring cancer stem cell niche directed tumor growth. Cell Cycle, 9(8), 1472-1479. https://doi.org/10.4161/cc.9.8.11198 [details]

Sottoriva, A., Verhoeff, J. J. C., Borovski, T., McWeeney, S. K., Naumov, L., Medema, J. P., Sloot, P. M. A., & Vermeulen, L. (2010). Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity. Cancer Research, 70(1), 46-56. https://doi.org/10.1158/0008-5472.CAN-09-3663 [details]

van Dijk, D., Ertaylan, G., Boucher, C. A. B., & Sloot, P. M. A. (2010). Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. BMC Systems Biology, 4, 96. https://doi.org/10.1186/1752-0509-4-96 [details]
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2009

Assel, M., van de Vijver, D., Libin, P., Theys, K., Harezlak, D., Ó Nualláin, B., Nowakowski, P., Bubak, M., Vandamme, A-M., Imbrechts, S., Sangeda, R., Jiang, T., Frentz, D., & Sloot, P. (2009). A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics, 147, 51-61. https://doi.org/10.3233/978-1-60750-027-8-51 [details]

Kroc, J., & Sloot, P. M. A. (2009). Complex systems modeling by cellular automata. In J. R. Rabuñal Dopico, J. Dorado de la Calle, & A. Pazos Sierra (Eds.), Encyclopedia of artificial intelligence (pp. 353-360). Information Science Reference. [details]

Sloot, P. M. A., Coveney, P. V., Ertaylan, G., Müller, V., Boucher, C. A., & Bubak, M. (2009). HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 367(1898), 2691-2703. https://doi.org/10.1098/rsta.2009.0043 [details]
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2008

Sloot, P. M. A., Ivanov, S. V., Boukhanovsky, A. V., van de Vijver, D. A. M. C., & Boucher, C. A. B. (2008). Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics, 85(8), 1175-1187. https://doi.org/10.1080/00207160701750583 [details]

2007

Ertaylan, G., & Sloot, P. M. A. (2007). A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressure. In Reviews in Antiretroviral Therapy (Vol. 2). http://www.hivpresentation.com/index.cfm?vid=EDE8FB47-423A-F6F7-C0921A2B09F679C8

Qiu, G., Kandhai, B. D., & Sloot, P. M. A. (2007). Understanding the complex dynamics of stock markets through cellular automata. Physical Review E, 75, 046116. http://www.science.uva.nl/research/scs/papers/archive/Qiu2007a.pdf [details]

Sloot, P. M. A., & Hoekstra, A. G. (2007). Modeling Dynamic Systems with Cellular Automata. In P. A. Fishwick (Ed.), Handbook of Dynamic System Modeling (pp. 21.1-21.19). (CRC Computer & Information Science series). Chapman & Hall. http://www.science.uva.nl/research/scs/papers/archive/Sloot2007b.pdf [details]

1997

Schoneveld, A., de Ronde, J. F., & Sloot, P. M. A. (1997). On the complexity of task allocation. Complexity, 3, 52-60.

1996

Kaandorp, J. A., Lowe, C. P., Frenkel, D., & Sloot, P. M. A. (1996). The effect of nutrient diffusion and flow on coral morphology. Physical Review Letters, 77(11), 2328-2331. https://doi.org/10.1103/PhysRevLett.77.2328 [details]
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2024

Crielaard, L., Uleman, J. F., Châtel, B. DL., Epskamp, S., Sloot, P., & Quax, R. (2024). Refining the causal loop diagram: A tutorial for maximizing the contribution of domain expertise in computational system dynamics modeling. Psychological Methods, 29(1), 169-201. https://doi.org/10.1037/met0000484

Korkmaz, H. I., Sheraton, V. M., Bumbuc, R. V., Li, M., Pijpe, A., Mulder, P. P. G., Boekema, B. K. H. L., de Jong, E., Papendorp, S. G. F., Brands, R., Middelkoop, E., Sloot, P. M. A., & van Zuijlen, P. P. M. (2024). An in silico modeling approach to understanding the dynamics of the post-burn immune response. Frontiers in Immunology, 15, Article 1303776. https://doi.org/10.3389/fimmu.2024.1303776 [details]
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An in silico modeling approach to understanding the dynamics of the post-burn immune response
Supplementary files
Supplemental data

Kovalchuk, S. V., de Mulatier, C., Krzhizhanovskaya, V. V., Mikyška, J., Paszyński, M., Dongarra, J., & Sloot, P. M. A. (2024). Computation at the Cutting Edge of Science. Journal of Computational Science, 81, Article 102379. https://doi.org/10.1016/j.jocs.2024.102379

Luo, L., Kovalchuk, S., Krzhizhanovskaya, V., Paszynski, M., de Mulatier, C., Dongarra, J., & Sloot, P. M. A. (2024). Trends in Computational Science: Natural Language Processing and Network Analysis of 23 Years of ICCS Publications. In L. Franco, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2024 - 24th International Conference, Proceedings (pp. 19-33). (Lecture Notes in Computer Science; Vol. 14833). Springer. https://doi.org/10.1007/978-3-031-63751-3_2

van Elteren, C., Quax, R., & Sloot, P. M. A. (2024). Cascades Towards Noise-Induced Transitions on Networks Revealed Using Information Flows. Entropy, 26(12), Article 1050. https://doi.org/10.3390/e26121050

2023

Crielaard, L., Quax, R., Sawyer, A. D. M., Vasconcelos, V. V., Nicolaou, M., Stronks, K., & Sloot, P. M. A. (2023). Using network analysis to identify leverage points based on causal loop diagrams leads to false inference. Scientific Reports, 13(1), Article 21046. https://doi.org/10.1038/s41598-023-46531-z [details]
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Kovalchuk, S. V., de Mulatier, C., Groen, D., Paszyński, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2023). The computational planet. Journal of Computational Science, 72, Article 102102. https://doi.org/10.1016/j.jocs.2023.102102 [details]
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Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2023). Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14075 LNCS, V-Vi.

Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2023). Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14076 LNCS, v-vi.

Schuurman, A. R., Sloot, P. M. A., Wiersinga, W. J., & van der Poll, T. (2023). Embracing complexity in sepsis. Critical Care, 27, Article 102. https://doi.org/10.1186/s13054-023-04374-0 [details]
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Yildirim, V., Sheraton, V. M., Brands, R., Crielaard, L., Quax, R., Riel, N. A. W. V., Stronks, K., Nicolaou, M., & Sloot, P. M. A. (2023). A data-driven computational model for obesity-driven diabetes onset and remission through weight loss. iScience, 26(11), Article 108324. https://doi.org/10.1016/j.isci.2023.108324 [details]
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A data-driven computational model for obesity-driven diabetes
Supplementary files
Supplemental Information-A data-driven computational model for obesity-driven diabetes

van der Zwet, K., Barros, A. I., van Engers, T. M., & Sloot, P. M. A. (2023). Promises and pitfalls of computational modelling for insurgency conflicts. The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology, 20(3), 333-350. Advance online publication. https://doi.org/10.1177/15485129211073612 [details]
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2022

Korkmaz, H. I., Niessen, F. B., Pijpe, A., Sheraton, V. M., Vermolen, F. J., Krijnen, P. A. J., Niessen, H. W. M., Sloot, P. M. A., Middelkoop, E., Gibbs, S., & van Zuijlen, P. P. M. (2022). Scar formation from the perspective of complexity science: A new look at the biological system as a whole. Journal of Wound Care, 31(2), 178-184. https://doi.org/10.12968/jowc.2022.31.2.178 [details]

Kovalchuk, S. V., Krzhizhanovskaya, V. V., Paszyński, M., Kranzlmüller, D., Dongarra, J., & Sloot, P. M. A. (2022). Computational science for a better future. Journal of Computational Science, 62, Article 101745. https://doi.org/10.1016/j.jocs.2022.101745 [details]

Melnikov, V. R., Christopoulos, G. I., Krzhizhanovskaya, V. V., Lees, M. H., & Sloot, P. M. A. (2022). Behavioural thermal regulation explains pedestrian path choices in hot urban environments. Scientific Reports, 12, Article 2441. https://doi.org/10.1038/s41598-022-06383-5 [details]
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Merabet, N., Lucassen, P. J., Crielaard, L., Stronks, K., Quax, R., Sloot, P. M. A., la Fleur, S. E., & Nicolaou, M. (2022). How exposure to chronic stress contributes to the development of type 2 diabetes: a complexity science approach. Frontiers in Neuroendocrinology, 65, Article 100972. https://doi.org/10.1016/j.yfrne.2021.100972 [details]
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1-s2.0-S0091302221000741-main
Supplementary files
1-s2.0-S0091302221000741-mmc1 (1)

Rutten, P., Lees, M. H., Klous, S., Heesterbeek, H., & Sloot, P. M. A. (2022). Modelling the dynamic relationship between spread of infection and observed crowd movement patterns at large scale events. Scientific Reports, 12, Article 14825. https://doi.org/10.1038/s41598-022-19081-z [details]
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Spini, G., Mancini, E., Attema, T., Abspoel, M., de Gier, J., Fehr, S., Veugen, T., van Heesch, M., Worm, D., De Luca, A., Cramer, R., & Sloot, P. M. A. (2022). New Approach to Privacy-Preserving Clinical Decision Support Systems for HIV Treatment. Journal of medical systems, 46(12), Article 84. Advance online publication. https://doi.org/10.1007/s10916-022-01851-x [details]
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van Elteren, C., Quax, R., & Sloot, P. (2022). Dynamic importance of network nodes is poorly predicted by static structural features. Physica A : Statistical Mechanics and its Applications, 593, Article 126889. Advance online publication. https://doi.org/10.1016/j.physa.2022.126889 [details]
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1-s2.0-S0378437122000243-main
Supplementary files
1-s2.0-S0378437122000243-mmc1

van Zuijlen, P. P. M., Korkmaz, H. I. K., Sheraton, V. M., Haanstra, T. M., Pijpe, A., de Vries, A., van der Vlies, C. H., Bosma, E., de Jong, E., Middelkoop, E., Vermolen, F. J., & Sloot, P. M. A. (2022). The Future of Burn Care From a Complexity Science Perspective. Journal of Burn Care & Research, 43(6), 1312-1321. https://doi.org/10.1093/jbcr/irac029 [details]
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van den Ende, M. W. J., Epskamp, S., Lees, M. H., van der Maas, H. L. J., Wiers, R. W., & Sloot, P. M. A. (2022). A review of mathematical modeling of addiction regarding both (neuro-) psychological processes and the social contagion perspectives. Addictive Behaviors, 127, Article 107201. Advance online publication. https://doi.org/10.1016/j.addbeh.2021.107201 [details]
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van der Zwet, K., Barros, A. I., van Engers, T. M., & Sloot, P. M. A. (2022). Emergence of protests during the COVID-19 pandemic: quantitative models to explore the contributions of societal conditions. Humanities and Social Sciences Communications, 9, Article 68. https://doi.org/10.1057/s41599-022-01082-y [details]
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s41599-022-01082-y
Supplementary files
41599 2022 1082 MOESM1 ESM

2021

Dutta, P., Quax, R., Crielaard, L., Badiali, L., & Sloot, P. M. A. (2021). Inferring temporal dynamics from cross-sectional data using Langevin dynamics. Royal Society Open Science, 8(11), Article 211374. https://doi.org/10.1098/rsos.211374 [details]
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Karbovskii, V., Lees, M., Presbitero, A., Kurilkin, A., Voloshin, D., Derevitskii, I., Karsakov, A., & Sloot, P. M. A. (2021). Ensemble learning for large-scale crowd flow prediction. Engineering Applications of Artificial Intelligence, 106, Article 104469. https://doi.org/10.1016/j.engappai.2021.104469 [details]
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Kovalchuk, S. V., Krzhizhanovskaya, V. V., Paszyński, M., Závodszky, G., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2021). 20 years of computational science: Selected papers from 2020 International Conference on Computational Science. Journal of Computational Science, 53, Article 101395. https://doi.org/10.1016/j.jocs.2021.101395 [details]

Mattsson, C. E. S., Takes, F. W., Heemskerk, E. M., Diks, C., Buiten, G., Faber, A., & Sloot, P. M. A. (2021). Functional Structure in Production Networks. Frontiers in Big Data, 4, Article 666712. https://doi.org/10.3389/fdata.2021.666712 [details]
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Presbitero, A., Melnikov, V. R., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2021). A unifying model to estimate the effect of heat stress in the human innate immunity during physical activities. Scientific Reports, 11, Article 16688. https://doi.org/10.1038/s41598-021-96191-0 [details]
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Rutten, P., Lees, M. H., Klous, S., & Sloot, P. M. A. (2021). Intermittent and persistent movement patterns of dance event visitors in large sporting venues. Physica A: Statistical Mechanics and its Applications, 563, Article 125448. Advance online publication. https://doi.org/10.1016/j.physa.2020.125448 [details]
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Rutten, P., Lees, M. H., Klous, S., & Sloot, P. M. A. (2021). State-space models reveal bursty movement behaviour of dance event visitors. EPJ Data Science, 10, Article 35. https://doi.org/10.1140/epjds/s13688-021-00292-9 [details]
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van der Wal, J., van Borkulo, C. D., Deserno, M. K., Breedvelt, J. J. F., Lees, M., Lokman, J. C., Borsboom, D., Denys, D., van Holst, R. J., Smidt, M. P., Stronks, K., Lucassen, P. J., van Weert, J. C. M., Sloot, P. M. A., Bockting, C. L., & Wiers, R. W. (2021). Advancing urban mental health research: from complexity science to actionable targets for intervention. The Lancet. Psychiatry, 8(11), 991-1000. https://doi.org/10.1016/S2215-0366(21)00047-X [details]
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PIIS221503662100047X-1
Supplementary files
1-s2.0-S221503662100047X-mmc1

2020

Cardoso, P. J. S., Rodrigues, J. M. F., Monteiro, J., Lam, R., Krzhizhanovskaya, V. V., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2020). Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science. Journal of Computational Science, 47, Article 101222. https://doi.org/10.1016/j.jocs.2020.101222 [details]

Crielaard, L., Dutta, P., Quax, R., Nicolaou, M., Merabet, N., Stronks, K., & Sloot, P. M. A. (2020). Social norms and obesity prevalence: From cohort to system dynamics models. Obesity Reviews, 21(9), Article e13044. Advance online publication. https://doi.org/10.1111/obr.13044 [details]
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obr.13044
Supplementary files
obr13044-sup-0001-supporting information

Har-Shemesh, O., Quax, R., Lansing, J. S., & Sloot, P. M. A. (2020). Questionnaire data analysis using information geometry. Scientific Reports, 10, Article 8633. https://doi.org/10.1038/s41598-020-63760-8 [details]
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s41598-020-63760-8
Supplementary files
41598 2020 63760 MOESM1 ESM

Kovalchuk, S. V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2020). 20 years of computational Science. Journal of Computational Science, 46, Article 101187. https://doi.org/10.1016/j.jocs.2020.101187 [details]

Melnikov, V. R., Krzhizhanovskaya, V. V., Lees, M. H., & Sloot, P. M. A. (2020). The impact of pace of life on pedestrian heat stress: A computational modelling approach. Environmental Research, 186, Article 109397. Advance online publication. https://doi.org/10.1016/j.envres.2020.109397 [details]
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Related datasets
Lees, M., Sloot, P. M. A., Krzhizhanovskaya, V. V. & Melnikov, V. (2020). Walking speeds in relation to climate in Singapore. Mendeley Data. https://doi.org/10.17632/k5rf27hnhk.1

Presbitero, A., Quax, R., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2020). Detecting critical transitions in the human innate immune system post-cardiac surgery. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. I, pp. 371-384). (Lecture Notes in Computer Science; Vol. 12137). Springer. https://doi.org/10.1007/978-3-030-50371-0_27 [details]

Severiukhina, O., Kesarev, S., Bochenina, K., Boukhanovsky, A., Lees, M. H., & Sloot, P. M. A. (2020). Large-scale forecasting of information spreading. Journal of Big Data, 7, Article 72. https://doi.org/10.1186/s40537-020-00350-5 [details]
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Sheraton, M. V., Chiew, G. G. Y., Melnikov, V., Tan, E. Y., Luo, K. Q., Verma, N., & Sloot, P. M. A. (2020). Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies. BMC Cancer, 20, Article 1201. https://doi.org/10.1186/s12885-020-07677-5 [details]
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Tan, C. H., Oh, H.-S., Sheraton, V. M., Mancini, E., Loo, S. C. J., Kjelleberg, S., Sloot, P. M. A., & Rice, S. A. (2020). Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems. Environmental Science and Technology, 54(11), 6730–6740. https://doi.org/10.1021/acs.est.0c00716 [details]
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acs.est.0c00716
Supplementary files
es0c00716 si 001

2019

Dutta, P., Ma, L., Ali, Y., Sloot, P. M. A., & Zheng, J. (2019). Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus. BMC Systems Biology, 13(Supplement 2), Article 36. https://doi.org/10.1186/s12918-019-0692-0 [details]
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Huang, Z., Lum, E., Jimenez, G., Semwal, M., Sloot, P., & Car, J. (2019). Medication management support in diabetes: a systematic assessment of diabetes self-management apps. BMC Medicine, 17, Article 127. https://doi.org/10.1186/s12916-019-1362-1 [details]
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Huang2019 Article MedicationManagementSupportInD
Supplementary files
12916 2019 1362 MOESM1 ESM
12916 2019 1362 MOESM2 ESM

Huang, Z., Tan, E., Lum, E., Sloot, P., Boehm, B. O., & Car, J. (2019). A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia: Feasibility Randomized Controlled Trial. JMIR mHealth and uHealth, 7(9), Article e14914. https://doi.org/10.2196/14914 [details]
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corrected paper
Supplementary files
14914-305850-1-SP

Kovalchuk, S. V., Krzhizhanovskaya, V. V., Shi, Y., Fua, H., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2019). Science at the intersection of data, modelling, and computation. Journal of Computational Science, 34, 117-119. https://doi.org/10.1016/j.jocs.2019.05.005 [details]

Olde Rikkert, M. G. M., van Zuijlen, P. P. M., de Kleuver, M., van Reekum, A., Hoekstra, A. G., & Sloot, P. M. A. (2019). Complexiteit van ziekten: Een moderne visie in tijden van vergrijzing en multimorbiditeit. Nederlands Tijdschrift voor Geneeskunde, 163(35), Article D3970. Advance online publication. https://www.ntvg.nl/artikelen/complexiteit-van-ziekten [details]
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Sheraton, M. V., Melnikov, V. R., & Sloot, P. M. A. (2019). Prediction and quantification of bacterial biofilm detachment using Glazier-Graner–Hogeweg method based model simulations. Journal of Theoretical Biology, 482, Article 109994. https://doi.org/10.1016/j.jtbi.2019.109994 [details]
Related datasets
Sloot, P. M. A., Melnikov, V. & Muniraj, V. (2019). Data for: Prediction and Quantification of Bacterial Biofilm Detachment Using Glazier-Graner-Hogeweg Method Based Model Simulations. Mendeley Data. https://doi.org/10.17632/6n9pswt7vk.1

2018

Kovalchuk, S. V., Krzhizhanovskaya, V. V., Koumoutsakos, P., Chatzi, E., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2018). The art of computational science: Bridging gaps – forming alloys. Journal of Computational Science, 26, 190-192. https://doi.org/10.1016/j.jocs.2018.04.014 [details]

Mancini, E., Quax, R., De Luca, A., Fidler, S., Stohr, W., & Sloot, P. M. A. (2018). A study on the dynamics of temporary HIV treatment to assess the controversial outcomes of clinical trials: An in-silico approach. PLoS ONE, 13(7), Article e0200892. https://doi.org/10.1371/journal.pone.0200892 [details]
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Melnikov, V., Krzhizhanovskaya, V. V., Lees, M. H., & Sloot, P. M. A. (2018). System dynamics of human body thermal regulation in outdoor environments. Building and Environment, 143, 760-769. https://doi.org/10.1016/j.buildenv.2018.07.024 [details]

Presbitero, A., Mancini, E., Brands, R., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2018). Supplemented alkaline phosphatase supports the immune response in patients undergoing cardiac surgery: Clinical and computational evidence. Frontiers in Immunology, 9, Article 2342. https://doi.org/10.3389/fimmu.2018.02342 [details]
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fimmu-09-02342
Supplementary files
Data Sheet 1 Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery Clinical and Computational Evidence

Quax, R., Chliamovitch, G., Dupuis, A., Falcone, J-L., Chopard, B., Hoekstra, A. G., & Sloot, P. M. A. (2018). Information processing features can detect behavioral regimes of dynamical systems. Complexity, 2018, Article 6047846. https://doi.org/10.1155/2018/6047846 [details]
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Roy, D., Lees, M. H., Pfeffer, K., & Sloot, P. M. A. (2018). Spatial segregation, inequality, and opportunity bias in the slums of Bengaluru. Cities : The International Journal of Urban Policy and Planning, 74, 269-276. Advance online publication. https://doi.org/10.1016/j.cities.2017.12.014 [details]

Roy, D., Palavalli, B., Menon, N., King, R., Pfeffer, K., Lees, M., & Sloot, P. M. A. (2018). Survey-based socio-economic data from slums in Bangalore, India. Scientific Data, 5, Article 170200. https://doi.org/10.1038/sdata.2017.200 [details]
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sdata2017200
sdata2017200-s2
Related datasets
King, R., Palavalli, B., Roy, D., Menon, N., Sloot, P. M. A., Pfeffer, K. & Lees, M. (2017). Socio-economic data from slums in Bangalore, India. UK Data Archive. https://doi.org/10.5255/ukda-sn-852705

Sheraton, M. V., & Sloot, P. M. A. (2018). Parallel performance analysis of bacterial biofilm simulation models. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : proceedings (Vol. I, pp. 496-505). (Lecture Notes in Computer Science; Vol. 10860). Springer. https://doi.org/10.1007/978-3-319-93698-7_38 [details]

Sheraton, M. V., Yam, J. K. H., Tan, C. H., Oh, H. S., Mancini, E., Yang, L., Rice, S. A., & Sloot, P. M. A. (2018). Mesoscopic Energy Minimization Drives Pseudomonas aeruginosa Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism. Antimicrobial Agents and Chemotherapy, 62(5), Article e02544-17. https://doi.org/10.1128/AAC.02544-17 [details]
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Sienkiwicz, J., Soja, K., Holyst, J. A., & Sloot, P. M. A. (2018). Categorical and Geographical Separation in Science. Scientific Reports, 8, Article 8253. https://doi.org/10.1038/s41598-018-26511-4 [details]
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s41598-018-26511-4
Supplementary files
41598 2018 26511 MOESM1 ESM

Tan, J. S. Y., Závodszky, G., & Sloot, P. M. A. (2018). Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : Proceedings, Part I (pp. 392-403). (Lecture Notes in Computer Science; Vol. 10860). Springer. https://doi.org/10.1007/978-3-319-93698-7_30 [details]
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2017

Car, J., Tan, W. S., Huang, Z., Sloot, P., & Franklin, B. D. (2017). eHealth in the future of medications management: personalisation, monitoring and adherence. BMC Medicine, 15, Article 73. https://doi.org/10.1186/s12916-017-0838-0 [details]
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Koumoutsakos, P., Chatzi, E., Krzhizhanovskaya, V. V., Lees, M., Dongarra, J., & Sloot, P. M. A. (2017). The Art of Computational Science, Bridging Gaps - Forming Alloys: Preface for ICCS 2017. Procedia Computer Science, 108, 1-2. https://doi.org/10.1016/j.procs.2017.05.281 [details]
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Kovalchuk, S. V., Abuhay, T. M., Altintas, I., Norman, M. L., Lees, M. H., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2017). Data through the Computational Lens. Journal of Computational Science, 20, 81-84. https://doi.org/10.1016/j.jocs.2017.05.003 [details]

Melnikov, V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2017). Models of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science, 108, 185-194. https://doi.org/10.1016/j.procs.2017.05.006 [details]
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Presbitero, A., Quax, R., Krzhizhanovskaya, V., & Sloot, P. (2017). Anomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science, 108, 99-108. https://doi.org/10.1016/j.procs.2017.05.002 [details]
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Quax, R., Har-Shemesh, O., & Sloot, P. M. A. (2017). Quantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy, 19(2), Article 85. https://doi.org/10.3390/e19020085 [details]
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Roy, D., Lees, M. H., Pfeffer, K., & Sloot, P. M. A. (2017). Modelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems, 64, 275-287. https://doi.org/10.1016/j.compenvurbsys.2017.03.008 [details]

Sloot, P. M. A. (2017). More likely we would be ritually slaughtered. In S. Thurner (Ed.), 43 Visions for Complexity (pp. 65-66). (Exploring complexity; Vol. 3). World Scientific. https://doi.org/10.1142/9789813206854_0033 [details]

Traag, V. A., Quax, R., & Sloot, P. M. A. (2017). Modelling the distance impedance of protest attendance. Physica A: Statistical Mechanics and its Applications, 468, 171-182. Advance online publication. https://doi.org/10.1016/j.physa.2016.10.054 [details]

de Graaf, C. S. L., Kandhai, D., & Sloot, P. M. A. (2017). Efficient Estimation of Sensitivities for Counterparty Credit Risk with the Finite Difference Monte Carlo Method. Journal of Computational Finance, 21(1), 83-113. Advance online publication. https://doi.org/10.2139/ssrn.2521431, https://doi.org/10.21314/JCF.2016.325 [details]
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2016

Altintas, I., Norman, M., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2016). Data through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science, 80, 1-7. https://doi.org/10.1016/j.procs.2016.05.426 [details]
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Donald Combs, C., Barham, S. R., & Sloot, P. M. A. (2016). Systems Biology and Health Systems Complexity. In C. D. Combs, J. A. Sokolowski, & C. M. Banks (Eds.), The Digital Patient: Advancing Healthcare, Research, and Education (pp. 73-84). (Wiley series in Modeling and Simulation). Wiley. https://doi.org/10.1002/9781118952788.ch7 [details]

Har-Shemesh, O., Quax, R., Hoekstra, A. G., & Sloot, P. M. A. (2016). Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics : Theory and Experiment, 2016(4), Article 043301. https://doi.org/10.1088/1742-5468/2016/04/043301 [details]
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Har-Shemesh, O., Quax, R., Miñano, B., Hoekstra, A. G., & Sloot, P. M. A. (2016). Nonparametric estimation of Fisher information from real data. Physical Review E, 93(2), Article 023301. https://doi.org/10.48550/arXiv.1507.00964, https://doi.org/10.1103/PhysRevE.93.023301 [details]
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Non-parametric estimation of Fisher information fr
PhysRevE.93

Presbitero, A., Krzhizhanovskaya, V., Mancini, E., Brands, R., & Sloot, P. (2016). Immune System Model Calibration by Genetic Algorithm. Procedia Computer Science, 101, 161-171. https://doi.org/10.1016/j.procs.2016.11.020 [details]
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Presbitero, A., Krzhizhanovskaya, V., Mancini, E., Brands, R., & Sloot, P. (2016). Reproducibility of Two Innate Immune System Models. In A. V. Chugunov, R. Bolgov, Y. Kabanov, G. Kampis, & M. Wimmer (Eds.), Digital Transformation and Global Society: First International Conference, DTGS 2016, St. Petersburg, Russia, June 22-24, 2016 : revised selected papers (pp. 501-514). (Communications in Computer and Information Science; Vol. 674). Springer. https://doi.org/10.1007/978-3-319-49700-6_50 [details]

Viswanathan, V., Lees, M., & Sloot, P. M. A. (2016). The influence of memory on indoor environment exploration: A numerical study. Behavior Research Methods, 48(2), 621-639. Advance online publication. https://doi.org/10.3758/s13428-015-0604-1 [details]
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influence of memory on indoor environment exploration
Supplementary files
Viswanathan2017 Article ErratumToTheInfluenceOfMemoryO

2015

Duijn, P. A. C., & Sloot, P. M. A. (2015). From Data to Disruption. Digital Investigation, 11, 39-45. https://doi.org/10.1016/j.diin.2015.09.005 [details]
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Javaheri, N., Dries, R., Burson, A., Stal, L. J., Sloot, P. M. A., & Kaandorp, J. A. (2015). Temperature affects the silicate morphology in a diatom. Scientific Reports, 5, Article 11652. https://doi.org/10.1038/srep11652 [details]
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Javaheri-SR-2015
Supplementary files
Temperature affects suppl

Koziel, S., Leifsson, L., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2015). Computational Science at the Gates of Nature, preface for ICCS 2015. Procedia Computer Science, 51, 1-8. https://doi.org/10.1016/j.procs.2015.05.177 [details]
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Krzhizhanovskaya, V. V., Dukhanov, A. V., Bilyatdinova, A., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Russian-Dutch double-degree Master’s programme in computational science in the age of global education. Journal of Computational Science, 10, 288-298. https://doi.org/10.1016/j.jocs.2015.05.001 [details]

Mei, S., Chen, B., Zhu, Y., Lees, M. H., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Simulating city-level airborne infectious diseases. Computers, Environment and Urban Systems, 51, 97-105. https://doi.org/10.1016/j.compenvurbsys.2014.12.002 [details]
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Mei, S., Zarrabi, N., Lees, M., & Sloot, P. M. A. (2015). Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing, 37, 311-321. Advance online publication. https://doi.org/10.1016/j.asoc.2015.08.010 [details]

Melnikov, V. R., Krzhizhanovskaya, V. V., Boukhanovsky, A. V., & Sloot, P. M. A. (2015). Data-driven modeling of transportation systems and traffic data analysis during a major power outage in the Netherlands. Procedia Computer Science, 66, 336-345. https://doi.org/10.1016/j.procs.2015.11.039 [details]
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Melnikova, N., Jordan, D., Krzhizhanovskaya, V., & Sloot, P. (2015). Numerical prediction of the IJkDijk trial embankment failure. Proceedings of the Institution of Civil Engineers. Geotechnical Engineering, 168(2), 158-171. https://doi.org/10.1680/geng.14.00040 [details]

Merelli, E., Rucco, M., Sloot, P., & Tesei, L. (2015). Topological Characterization of Complex Systems: Using Persistent Entropy. Entropy, 17(10), 6872-6892. https://doi.org/10.3390/e17106872 [details]
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Pyayt, A. L., Shevchenko, D. V., Kozionov, A. P., Mokhov, I. I., Lang, B., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2015). Combining data-driven methods with finite element analysis for flood early warning systems. Procedia Computer Science, 51, 2347-2356. https://doi.org/10.1016/j.procs.2015.05.404 [details]
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2014

Bilyatdinova, A., Dukhanov, A., Bochenina, K., Boukhanovsky, A. V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing. In 2014 IEEE Frontiers in Education Conference: FIE 2014 : Opening Innovations and Internationalization in Engineering Education : October 22-25, 2014, Madrid, Spain, Melia Castilla Hotel & Convention Center : proceedings IEEE. https://doi.org/10.1109/FIE.2014.7044195 [details]

Bui, Q. C., Sloot, P. M. A., van Mulligen, E. M., & Kors, J. A. (2014). A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics, 30(23), 3365-3371. Advance online publication. https://doi.org/10.1093/bioinformatics/btu557 [details]
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Cheong, S. A., Tan, T. L., Chen, C-C., Chang, W-L., Liu, Z., Chew, L. Y., Sloot, P. M. A., & Johnson, N. F. (2014). Short-Term Forecasting of Taiwanese Earthquakes Using a Universal Model of Fusion-Fission Processes. Scientific Reports, 4, Article 3624. https://doi.org/10.1038/srep03624 [details]
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Dijkstra, L. J., Yakushev, A. V., Duijn, P. A. C., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Inference of the Russian drug community from one of the largest social networks in the Russian Federation. Quality and Quantity, 48(5), 2739-2755. Advance online publication. https://doi.org/10.1007/s11135-013-9921-6 [details]

Duan, W., Quax, R., Lees, M., Qiu, X., & Sloot, P. M. A. (2014). Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics : Theory and Experiment, 2014(12), Article P12020. https://doi.org/10.1088/1742-5468/2014/12/P12020 [details]

Duijn, P. A. C., Kashirin, V., & Sloot, P. M. A. (2014). The Relative Ineffectiveness of Criminal Network Disruption. Scientific Reports, 4, Article 4238. https://doi.org/10.1038/srep04238 [details]
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srep04238
Supplementary files
SI: Properties of hard- and soft- datasets used in this study

Dukhanov, A. V., Krzhizhanovskaya, V. V., Bilyatdinova, A., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Double-degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam. Procedia Computer Science, 29, 1433-1445. https://doi.org/10.1016/j.procs.2014.05.130 [details]
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Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Free-surface flow simulations for discharge-based operation of hydraulic structure gates. Journal of Hydroinformatics, 16(1), 189-206. Advance online publication. https://doi.org/10.2166/hydro.2013.215 [details]
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Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Reducing cross-flow vibrations of underflow gates: experiments and numerical studies. Journal of Fluids and Structures, 50, 25-48. Advance online publication. https://doi.org/10.1016/j.jfluidstructs.2014.06.010 [details]
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Mei, S., Zhu, Y., Qiu, X., Zhou, X., Zu, Z., Boukhanovsky, A. V., & Sloot, P. M. A. (2014). Individual decision making can drive epidemics: a fuzzy cognitive map study. IEEE Transactions on Fuzzy Systems, 22(2), 264-273. Advance online publication. https://doi.org/10.1109/TFUZZ.2013.2251638 [details]

Mordvintsev, A. S., Krzhizhanovskaya, V. V., Lees, M. H., & Sloot, P. M. A. (2014). Simulation of City Evacuation Coupled to Flood Dynamics. In U. Weidmann, U. Kirsch, & M. Schreckenberg (Eds.), Pedestrian and Evacuation Dynamics 2012 (pp. 485-499). Springer. https://doi.org/10.1007/978-3-319-02447-9_40 [details]
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Pyayt, A. L., Kozionov, A. P., Kusherbaeva, V. T., Mokhov, I. I., Krzhizhanovskaya, V. V., Broekhuijsen, B. J., Meijer, R. J., & Sloot, P. M. A. (2014). Signal analysis and anomaly detection for flood early warning systems. Journal of Hydroinformatics, 16(5), 1025-1043. https://doi.org/10.2166/hydro.2014.067 [details]

Pyayt, A. L., Kozionov, A. P., Mokhov, I. I., Lang, B., Meijer, R. J., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Time-frequency Methods for Structural Health Monitoring. Sensors, 14(3), 5147-5173. https://doi.org/10.3390/s140305147 [details]
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Roy, D., Lees, M. H., Palavalli, B., Pfeffer, K., & Sloot, M. A. P. (2014). The emergence of slums: A contemporary view on simulation models. Environmental Modelling & Software, 59, 76-90. https://doi.org/10.1016/j.envsoft.2014.05.004 [details]

Viswanathan, V., Lee, C. E., Lees, M. H., Cheong, S. A., & Sloot, P. M. A. (2014). Quantitative Comparison Between Crowd Models for Evacuation Planning and Evaluation. The European Physical Journal B. Condensed Matter Physics, 87(2), 27. Article 27. https://doi.org/10.1140/epjb/e2014-40699-x [details]

2013

Adamatzky, A., Akl, S., Alonso-Sanz, R., van Dessel, W., Ibrahim, Z., Ilachinski, A., Jones, J., Kayem, A. V. D. M., Martínez, G. J., de Oliveira, P., Prokopenko, M., Schubert, T., Sloot, P., Strano, E., & Yang, X-S. (2013). Are motorways rational from slime mould's point of view? International Journal of Parallel, Emergent and Distributed Systems, 28(3), 230-248. Advance online publication. https://doi.org/10.1080/17445760.2012.685884 [details]

Adamatzky, A., Lees, M., & Sloot, P. (2013). Bio-development of motorway networks in the Netherlands: a slime mould approach. Advances in Complex Systems, 16(02n03), 2326-0386. Article 1250034. Advance online publication. https://doi.org/10.1142/S0219525912500348 [details]

Alexandrov, V., Lees, M., Krzhizhanovskaya, V., Dongarra, J., & Sloot, P. M. A. (2013). Computation at the Frontiers of Science, preface for ICCS 2013. Procedia Computer Science, 18, 1-9. https://doi.org/10.1016/j.procs.2013.05.163 [details]
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Bankhead, A., Mancini, E., Sims, A. C., Baric, R. S., McWeeney, S., & Sloot, P. M. A. (2013). A simulation framework to investigate in vitro viral infection dynamics. Journal of Computational Science, 4(3), 127-134. Advance online publication. https://doi.org/10.1016/j.jocs.2011.08.007 [details]

Bartha, I., Assel, M., Sloot, P. M. A., Zazzi, M., Torti, C., Schülter, E., De Luca, A., Sönnerborg, A., Abecasis, A. B., Van Laethem, K., Rosi, A., Svärd, J., Paredes, R., van de Vijver, D. A. M. C., Vandamme, A-M., & Müller, V. (2013). Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort. BMC Infectious Diseases, 13, 537. https://doi.org/10.1186/1471-2334-13-537 [details]
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Superinfection with drug-resistant HIV add. file5.pdf
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Superinfection with drug-resistant HIV add. file3.pdf
Superinfection with drug-resistant HIV.pdf
Superinfection with drug-resistant HIV add. file4.pdf
Superinfection with drug-resistant HIV add. file2.pdf
Superinfection with drug-resistant HIV add. file1.zip

Carey, L. B., van Dijk, D., Sloot, P. M. A., Kaandorp, J. A., & Segal, E. (2013). Promoter sequence determines the relationship between expression level and noise. PLoS Biology, 11(4), Article e1001528. https://doi.org/10.1371/journal.pbio.1001528 [details]
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Czaplicka, A., Holyst, J. A., & Sloot, P. M. A. (2013). Noise enhances information transfer in hierarchical networks. Scientific Reports, 3, Article 1223. https://doi.org/10.1038/srep01223 [details]
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Czaplicka, A., Hołyst, J. A., & Sloot, P. M. A. (2013). Stochastic resonance for information flows on hierarchical networks. The European Physical Journal - Special Topics, 222(6), 1335-1345. https://doi.org/10.1140/epjst/e2013-01929-5 [details]

Krzhizhanovskaya, V. V., Melnikova, N. B., Chirkin, A. M., Ivanov, S. V., Boukhanovsky, A. V., & Sloot, P. M. A. (2013). Distributed Simulation of City Inundation by Coupled Surface and Subsurface Porous Flow for Urban Flood Decision Support System. Procedia Computer Science, 18, 1046-1056. https://doi.org/10.1016/j.procs.2013.05.270 [details]
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Libin, P., Beheydt, G., Deforche, K., Imbrechts, S., Ferreira, F., Van Laethem, K., Theys, K., Carvalho, A. P., Cavaco-Silva, J., Lapadula, G., Torti, C., Assel, M., Wesner, S., Snoeck, J., Ruelle, J., de Bel, A., Lacor, P., de Munter, P., van Wijngaerden, E., ... Vandamme, A-M. (2013). RegaDB: Community-driven data management and analysis for infectious diseases. Bioinformatics, 29(11), 1477-1480. Advance online publication. https://doi.org/10.1093/bioinformatics/btt162 [details]
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Melnikova, N. B., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2013). Modeling earthen dikes using real-time sensor data. Journal of Hydrology, 496, 154-165. https://doi.org/10.1016/j.jhydrol.2013.05.031 [details]

Nichols, B. E., Boucher, C. A. B., van Dijk, J. H., Thuma, P. E., Nouwen, J. L., Baltussen, R., van de Wijgert, J., Sloot, P. M. A., & van de Vijver, D. A. M. C. (2013). Cost-effectiveness of Pre-Exposure Prophylaxis (PrEP) in preventing HIV-1 infections in rural Zambia: a modeling study. PLoS ONE, 8(3), Article e59549. https://doi.org/10.1371/journal.pone.0059549 [details]
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Pyayt, A. L., Kozionov, A. P., Mokhov, I. I., Lang, B., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2013). An Approach for Real-time Levee Health Monitoring Using Signal Processing Methods. Procedia Computer Science, 18, 2357-2366. https://doi.org/10.1016/j.procs.2013.05.407 [details]
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Quax, R., Apolloni, A., & Sloot, P. M. A. (2013). The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface, 10(88), 20130568. Article 20130568. Advance online publication. https://doi.org/10.1098/rsif.2013.0568 [details]
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Quax, R., Apolloni, A., & Sloot, P. M. A. (2013). Towards understanding the behavior of physical systems using information theory. The European Physical Journal - Special Topics, 222(6), 1389-1401. https://doi.org/10.1140/epjst/e2013-01933-9 [details]

Quax, R., Kandhai, D., & Sloot, P. M. A. (2013). Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series. Scientific Reports, 3, Article 1898. https://doi.org/10.1038/srep01898 [details]
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Quax, R., van de Vijver, D. A. M. C., Frentz, D., & Sloot, P. M. A. (2013). Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM. The European Physical Journal - Special Topics, 222(6), 1347-1358. https://doi.org/10.1140/epjst/e2013-01930-0 [details]

Toth, N., Gulyas, L., Legendi, R. O., Duijn, P., Sloot, P. M. A., & Kampis, G. (2013). The importance of centralities in dark network value chains. The European Physical Journal - Special Topics, 222(6), 1413-1439. https://doi.org/10.1140/epjst/e2013-01935-7 [details]

Yakushev, A. V., Boukhanovsky, A. V., & Sloot, P. M. A. (2013). Topic Crawler for Social Networks Monitoring. In P. Klinov, & D. Mouromtsev (Eds.), Knowledge Engineering and the Semantic Web: 4th International Conference, KESW 2013, St. Petersburg, Russia, October 7-9, 2013 : proceedings (pp. 214-227). (Communications in Computer and Information Science; Vol. 394). Springer. https://doi.org/10.1007/978-3-642-41360-5_17 [details]

Zarrabi, N., Prosperi, M. C. F., Belleman, R. G., Di Giambenedetto, S., Fabbiani, M., De Luca, A., & Sloot, P. M. A. (2013). Combining social and genetic networks to study HIV transmission in mixing risk groups. The European Physical Journal - Special Topics, 222(6), 1377-1387. https://doi.org/10.1140/epjst/e2013-01932-x [details]

2012

Adamatzky, A., Akl, S., Alonso-Sanz, R., van Dessel, W., Ibrahim, Z., Ilachinski, A., Jones, J., Kayem, A. V. D. M., Martínez, G. J., de Oliveira, P., Prokopenko, M., Schubert, T., Sloot, P., Strano, E., & Yang, X-S. (2012). Biorationality of motorways. In A. Adamatzky (Ed.), Bioevaluation of world transport networks (pp. 309-325). World Scientific. http://www.worldscibooks.com/chaos/8482.html [details]

Adamatzky, A., Lees, M., & Sloot, P. M. A. (2012). Physarum in the Netherlands: responding to the flood. In A. Adamatzky (Ed.), Bioevaluation of world transport networks (pp. 213-234). World Scientific. http://www.worldscibooks.com/chaos/8482.html [details]

Bui, Q. C., & Sloot, P. M. A. (2012). A robust approach to extract biomedical events from literature. Bioinformatics, 28(20), 2654-2661. Advance online publication. https://doi.org/10.1093/bioinformatics/bts487 [details]

Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2012). Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling. In F. Klijn, & T. Schweckendiek (Eds.), Comprehensive flood risk management: research for policy and practice (pp. 425-434). CRC Press. [details]
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Mancini, E., Gastiglione, F., Bernaschi, M., de Luca, A., & Sloot, P. M. A. (2012). HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: a computational study. PLoS ONE, 7(4), Article e36108. https://doi.org/10.1371/journal.pone.0036108 [details]
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Qiu, G., Kandhai, D., Johnson, N. F., & Sloot, P. M. A. (2012). Understanding complex dynamics in derivatives finance: why do options markets smile? Advances in Complex Systems, 15(5), Article 1250050. https://doi.org/10.1142/S0219525912500506 [details]

Zarrabi, N., Prosperi, M., Belleman, R. G., Colafigli, M., De Luca, A., & Sloot, P. M. A. (2012). Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission. PLoS ONE, 7(9), e46156. https://doi.org/10.1371/journal.pone.0046156 [details]
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2011

Altintas, I., Anand, M. K., Vuong, T. N., Bowers, S., Ludäscher, B., & Sloot, P. M. A. (2011). A data model for analyzing user collaborations in workflow-driven e-Science. The International Journal of Computers and Their Applications (IJCA), 18(3), 160-179. http://www.science.uva.nl/research/scs/papers/archive/Altintas2011b.pdf [details]

Bankhead, A., Mancini, E., Sims, A. C., Baric, R. S., McWeeney, S., & Sloot, P. M. A. (2011). A simulation framework to investigate in vitro viral infection dynamics. Procedia Computer Science, 4, 1798-1807. https://doi.org/10.1016/j.procs.2011.04.195 [details]
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Bui, Q. C., Katrenko, S., & Sloot, P. M. A. (2011). A hybrid approach to extract protein-protein interactions. Bioinformatics, 27(2), 259-265. https://doi.org/10.1093/bioinformatics/btq620 [details]
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Mei Shan, A., Quax, R., van de Vijver, D., Zhu, Y., & Sloot, P. M. A. (2011). Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases, 11(118). https://doi.org/10.1186/1471-2334-11-118 [details]
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Mościcki, J. T., Lamanna, M., Bubak, M., & Sloot, P. M. A. (2011). Processing moldable tasks on the grid: late job binding with lightweight user-level overlay. Future Generation Computer Systems, 27(6), 725-736. https://doi.org/10.1016/j.future.2011.02.002 [details]

Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2011). Cellular automata simulations on a FPGA cluster. International Journal of High Performance Computing Applications, 25(2), 193-204. https://doi.org/10.1177/1094342010383138 [details]

Naumov, L., Hoekstra, A., & Sloot, P. (2011). Cellular automata models of tumour natural shrinkage. Physica A : Statistical Mechanics and its Applications, 390(12), 2283-2290. https://doi.org/10.1016/j.physa.2011.02.006 [details]

Quax, R., Bader, D. A., & Sloot, P. M. A. (2011). SEECN: simulating complex systems using dynamic complex networks. International Journal for Multiscale Computational Engineering, 9(2), 201-214. https://doi.org/10.1615/IntJMultCompEng.v9.i2.50 [details]
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2010

Altintas, I., Anand, M. K., Crawl, D., Bowers, S., Belloum, A., Missier, P., Ludäscher, B., Goble, C. A., & Sloot, P. M. A. (2010). Understanding collaborative studies through interoperable workflow provenance. In D. L. McGuinness, J. R. Michaelis, & L. Moreau (Eds.), Provenance and Annotation of Data and Processes: third International Provenance and Annotation Workshop, IPAW 2010, Troy, NY, USA, June 15-16, 2010 : revised selected papers (pp. 42-58). (Lecture Notes in Computer Science; Vol. 6378). Springer. https://doi.org/10.1007/978-3-642-17819-1_6 [details]

Bui, Q. C., Ó Nualláin, B., Boucher, C. A., & Sloot, P. M. A. (2010). Extracting causal relations on HIV drug resistance from literature. BMC Bioinformatics, 11, 101. https://doi.org/10.1186/1471-2105-11-101 [details]
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Cui, J., Kaandorp, J. A., Sloot, P. M. A., & Thiagarajan, P. S. (2010). Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes. In J. E. García, & V. R. Wright (Eds.), Congestive heart failure: symptoms, causes and treatment (pp. 111-127). (Cardiology research and clinical developments). Nova Publishers. https://www.novapublishers.com/catalog/product_info.php?products_id=11091 [details]

Frentz, D., Boucher, C. A. B., Assel, M., De Luca, A., Fabbiani, M., Incardona, F., Libin, P., Manca, N., Müller, V., Ó Nualláin, B., Paredes, R., Prosperi, M., Quiros-Roldan, E., Ruiz, L., Sloot, P. M. A., Torti, C., Vandamme, A-M., Van Laethem, K., Zazzi, M., & van de Vijver, D. A. M. C. (2010). Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time. PLoS ONE, 5(7), e11505. https://doi.org/10.1371/journal.pone.0011505 [details]
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Guisado, J. L., Jiménez-Morales, F., Guerra, J. M., Fernández de Vega, F., Iskra, K. A., Sloot, P. M. A., & Lombraña González, D. (2010). Laser dynamics modelling and simulation: An application of dynamic load balancing of parallel cellular automata. In F. Fernández de Vega, & E. Cantú-Paz (Eds.), Parallel and Distributed Computational Intelligence (pp. 321-347). (Studies in Computational Intelligence; Vol. 269). Springer. https://doi.org/10.1007/978-3-642-10675-0_14 [details]
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Jaeger, S., Ertaylan, G., van Dijk, D., Leser, U., & Sloot, P. (2010). Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PLoS ONE, 5(10), e13139. https://doi.org/10.1371/journal.pone.0013139 [details]
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Mei, S., Sloot, P. M. A., Quax, R., Zhu, Y., & Wang, W. (2010). Complex agent networks explaining the HIV epidemic among homosexual men in Amsterdam. Mathematics and Computers in Simulation, 80(5), 1018-1030. https://doi.org/10.1016/j.matcom.2009.12.008 [details]

Mei, S., van de Vijver, D., Xuan, L., Zhu, Y., & Sloot, P. M. A. (2010). Quantitatively evaluating interventions in the influenza A (H1N1) epidemic on China campus grounded on individual-based simulations. Procedia Computer Science, 1(1), 1675-1682. https://doi.org/10.1016/j.procs.2010.04.187 [details]
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Naumov, L., Hoekstra, A., & Sloot, P. (2010). The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth. Procedia Computer Science, 1(1), 971-978. https://doi.org/10.1016/j.procs.2010.04.107 [details]
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Prosperi, M. C. F., Rosen-Zvi, M., Altman, A., Zazzi, M., Di Giambenedetto, S., Kaiser, R., Schülter, E., Struck, D., Sloot, P., van de Vijver, D. A., Vandamme, A-M., & Sönnerborg, A. (2010). Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models. PLoS ONE, 5(10), e13753. https://doi.org/10.1371/journal.pone.0013753 [details]
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Qiu, G., Kandhai, D., & Sloot, P. M. A. (2010). Modeling options markets by focusing on active tradersr. Procedia Computer Science, 1(1), 2457-2462. https://doi.org/10.1016/j.procs.2010.04.277 [details]
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Schwiegelshohn, U., Badia, R. M., Bubak, M. T., Danelutto, M., Dustdar, S., Gagliardi, F., Geiger, A., Hluchy, L., Kranzlmüller, D., Laure, E., Priol, T., Reinefeld, A., Resch, M., Reuter, A., Rienhoff, O., Rüter, T., Sloot, P., Talia, D., Ullmann, K., ... von Voigt, G. (2010). Perspectives on grid computing. Future Generation Computer Systems, 26(8), 1104-1115. https://doi.org/10.1016/j.future.2010.05.010 [details]

Sloot, P. M. A. (2010). The cross-disciplinary road to true computational science. Journal of Computational Science, 1(3), 131. https://doi.org/10.1016/j.jocs.2010.07.004 [details]

Sloot, P. M. A., & Hoekstra, A. G. (2010). Multi-scale modelling in computational biomedicine. Briefings in Bioinformatics, 11(1), 142-152. https://doi.org/10.1093/bib/bbp038 [details]
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Sottoriva, A., Sloot, P. M. A., Medema, J. P., & Vermeulen, L. (2010). Exploring cancer stem cell niche directed tumor growth. Cell Cycle, 9(8), 1472-1479. https://doi.org/10.4161/cc.9.8.11198 [details]

Sottoriva, A., Verhoeff, J. J. C., Borovski, T., McWeeney, S. K., Naumov, L., Medema, J. P., Sloot, P. M. A., & Vermeulen, L. (2010). Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity. Cancer Research, 70(1), 46-56. https://doi.org/10.1158/0008-5472.CAN-09-3663 [details]

Zarrabi, N., Mancini, E., Tay, J., Shahand, S., & Sloot, P. M. A. (2010). Modeling HIV-1 intracellular replication: two simulation approaches. Procedia Computer Science, 1(1), 555-564. https://doi.org/10.1016/j.procs.2010.04.059 [details]
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Zudilova-Seinstra, E. V., de Koning, P. J. H., Suinesiaputra, A., van Schooten, B. W., van der Geest, R. J., Reiber, J. H. C., & Sloot, P. M. A. (2010). Evaluation of 2D and 3D glove input applied to medical image analysis. International Journal of Human-Computer Studies, 68(6), 355-369. https://doi.org/10.1016/j.ijhcs.2009.08.001 [details]

Zudilova-Seinstra, E., van Schooten, B., Suinesiaputra, A., van der Geest, R., van Dijk, B., Reiber, J., & Sloot, P. (2010). Exploring individual user differences in the 2D/3D interaction with medical image data. Virtual Reality, 14(2), 105-118. https://doi.org/10.1007/s10055-009-0131-4 [details]
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van Dijk, D., Ertaylan, G., Boucher, C. A. B., & Sloot, P. M. A. (2010). Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. BMC Systems Biology, 4, 96. https://doi.org/10.1186/1752-0509-4-96 [details]
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van Dijk, D., Sloot, P. M. A., Tay, J. C., & Schut, M. C. (2010). Individual-based simulation of sexual selection: A quantitative genetic approach. Procedia Computer Science, 1(1), 2003-2011. https://doi.org/10.1016/j.procs.2010.04.224 [details]
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2009

Assel, M., van de Vijver, D., Libin, P., Theys, K., Harezlak, D., Ó Nualláin, B., Nowakowski, P., Bubak, M., Vandamme, A-M., Imbrechts, S., Sangeda, R., Jiang, T., Frentz, D., & Sloot, P. (2009). A collaborative environment allowing clinical investigations on integrated biomedical databases. Studies in Health Technology and Informatics, 147, 51-61. https://doi.org/10.3233/978-1-60750-027-8-51 [details]

Axner, L., Hoekstra, A. G., Jeays, A., Lawford, P., Hose, R., & Sloot, P. M. A. (2009). Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods. BioMedical Engineering OnLine, 8, 23. https://doi.org/10.1186/1475-925X-8-23 [details]
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Bossenbroek, A., Tirado-Ramos, A., & Sloot, P. M. A. (2009). Grid resource allocation by means of option contracts. IEEE Systems Journal, 3(1), 49-64. https://doi.org/10.1109/JSYST.2008.2011255 [details]

Caroprese, L., Sloot, P. M. A., Ó Nualláin, B., & Zumpano, E. (2009). A logical framework for detecting anomalies in drug resistance algorithms. In B. C. Desai (Ed.), Proceedings of IDEAS'09: International Database Engineering & Applications Symposium : Cetraro - Calabria - Italy : 16-18 September 2009 (pp. 23-30). (ACM International Conference Proceedings Series). Association for Computing Machinery. https://doi.org/10.1145/1620432.1620436 [details]

Cui, J., Kaandorp, J. A., Sloot, P. M. A., Lloyd, C. M., & Filatov, M. V. (2009). Calcium homeostasis and signaling in yeast cells and cardiac myocytes. FEMS Yeast Research, 9(8), 1137-1147. https://doi.org/10.1111/j.1567-1364.2009.00552.x [details]

Gubala, T., Bubak, M., & Sloot, P. M. A. (2009). Semantic Integration for Research Environments. In M. Cannataro (Ed.), Handbook of research on computational grid technologies for life sciences, biomedicine, and healthcare (pp. 514-530). Medical Information Science Reference. http://www.igi-global.com/book/handbook-research-computational-grid-technologies/450 [details]

Kroc, J., & Sloot, P. M. A. (2009). Complex systems modeling by cellular automata. In J. R. Rabuñal Dopico, J. Dorado de la Calle, & A. Pazos Sierra (Eds.), Encyclopedia of artificial intelligence (pp. 353-360). Information Science Reference. [details]

Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2009). Compute bound and I/O bound Cellular Automata simulations on FPGA logic. ACM Transactions on Reconfigurable Technology and Systems, 1(4), 23. http://doi.acm.org/10.1145/1462586.1462592 [details]

Quax, R., Bader, D. A., & Sloot, P. M. A. (2009). Simulating individual-based models of epidemics in hierarchical networks. In G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2009: 9th International Conference Baton Rouge, LA, USA, May 25-27, 2009 : proceedings (Vol. I, pp. 725-734). (Lecture Notes in Computer Science; Vol. 5544). Springer. https://doi.org/10.1007/978-3-642-01970-8_72 [details]

Sloot, P. M. A., Coveney, P. V., Ertaylan, G., Müller, V., Boucher, C. A., & Bubak, M. (2009). HIV decision support: From molecule to man. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 367(1898), 2691-2703. https://doi.org/10.1098/rsta.2009.0043 [details]
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Strijkers, R., Muller, L., Cristea, M., Belleman, R., de Laat, C., Sloot, P., & Meijer, R. (2009). Interactive control over a programmable computer network using a multi-touch surface. In G. Allen, J. Nabrzyski, E. Seidel, G. D. van Albada, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2009: 9th International Conference Baton Rouge, LA, USA, May 25-27, 2009 : proceedings (Vol. II, pp. 719-728). (Lecture Notes in Computer Science; Vol. 5545). Springer. https://doi.org/10.1007/978-3-642-01973-9_80 [details]

Zudilova-Seinstra, E. V., Sloot, P. M. A., de Koning, P. J. H., Suinesiaputra, A., van der Geest, R. J., & Reiber, J. H. C. (2009). Exploring 2D/3D input techniques for medical image analysis. In E. Banissi, M. Sarfraz, F. Khosrowshahi, J. Counsell, R. Laing, C. Moore, A. J. Cowell, M. Hou, G. Y. Tian, M. Dastbaz, M. Bannatyne, J. J. Zhang, V. Scarano, R. De Chiara, U. Erra, A. Ursyn, & H. Levkowitz (Eds.), International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), Barcelona, Spain (pp. 147-152). IEEE Computer Society. https://doi.org/10.1109/VIZ.2009.18 [details]

2008

Guisado, J. L., Fernández de Vega, F., Jiménez Morales, F., Iskra, K. A., & Sloot, P. M. A. (2008). Parallel Cellular Automata-based simulation of laser dynamics using dynamic load balancing. In Ó. Garnica (Ed.), First International Workshop on Parallel Architectures and Bioinspired Algorithms (pp. 49-55). Universidad Complutense de Madrid. http://www.science.uva.nl/research/scs/papers/archive/Guisado2008a.pdf [details]

Guisado, J. L., Fernández de Vega, F., Jiménez Morales, F., Iskra, K. A., & Sloot, P. M. A. (2008). Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing. International Journal of High Performance Systems Architecture (IJHPSA), 1(4), 251-259. https://doi.org/10.1504/IJHPSA.2008.024209 [details]

Guo, Z., Sloot, P. M. A., & Tay, J. C. (2008). A hybrid agent-based approach for modeling microbiological systems. Journal of Theoretical Biology, 255(2), 163-175. https://doi.org/10.1016/j.jtbi.2008.08.008 [details]

Huang, H-C., Konagaya, A., Lanza, V., & Sloot, P. M. A. (2008). Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. IEEE Transactions on Information Technology in Biomedicine, 12(2), 133-137. https://doi.org/10.1109/TITB.2008.918585 [details]

Korkhov, V. V., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2008). A grid-based virtual reactor: Parallel performance and adaptive load balancing. Journal of Parallel and Distributed Computing, 68(5), 596-608. https://doi.org/10.1016/j.jpdc.2007.08.010 [details]

Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2008). Floating point based Cellular Automata simulations using a dual FPGA-enabled system. In V. Kindratenko (Ed.), 2008 Second International Workshop on High-Performance Reconfigurable Computing Technology and Applications (HPRCTA): proceedings: held in conjunction with SC 08, Austin, TX, November 17, 2008 IEEE. https://doi.org/10.1109/HPRCTA.2008.4745686 [details]

Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). Dynamic interactions in HLA component model for multiscale simulations. In M. Bubak, G. D. van Albada, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008 : proceedings (Vol. II, pp. 217-226). (Lecture Notes in Computer Science; Vol. 5102). Springer. https://doi.org/10.1007/978-3-540-69387-1_24 [details]

Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). HLA component based environment for distributed multiscale simulations. In T. Priol, & M. Vanneschi (Eds.), From grids to service and pervasive computing (pp. 229-239). Springer. https://doi.org/10.1007/978-0-387-09455-7_17 [details]

Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). HLA component model on the example of multiscale simulation. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings (pp. 272-275). Kraków: Academic Computer Centre CYFRONET AGH. [details]

Rycerz, K., Bubak, M., & Sloot, P. M. A. (2008). Using HLA and Grid for distributed multiscale simulations. In R. Wyrzykowski, J. Dongarra, K. Karczewski, & J. Wasniewski (Eds.), Parallel Processing and Applied Mathematics: 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007 : revised selected papers (pp. 780-787). (Lecture Notes in Computer Science; Vol. 4967). Springer. https://doi.org/10.1007/978-3-540-68111-3_82 [details]

Rycerz, K., Bubak, M., Sloot, P., & Getov, V. (2008). Problem solving environment for distributed interactive applications. In S. Gorlatch, M. Bubak, & T. Priol (Eds.), Achievements in European research on grid systems: CoreGRID Integration Workshop 2006 (selected papers), October 19-20, Krakow, Poland (pp. 55-66). Springer. https://doi.org/10.1007/978-0-387-72812-4_5 [details]
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Sloot, P. (2008). ViroLab: From the molecule to the man. eStrategies Projects, (4), 53-55. http://www.science.uva.nl/research/scs/papers/archive/Sloot2008b.pdf [details]
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Sloot, P. M. A., Ivanov, S. V., Boukhanovsky, A. V., van de Vijver, D. A. M. C., & Boucher, C. A. B. (2008). Stochastic simulation of HIV population dynamics through complex network modelling. International Journal of Computer Mathematics, 85(8), 1175-1187. https://doi.org/10.1080/00207160701750583 [details]

Sloot, P., Coveney, P., Bubak, M. T., Vandamme, A-M., Ó Nuallain, B., van de Vijver, D., & Boucher, C. (2008). ViroLab: A collaborative decision support system in viral disease treatment. Reviews in Antiviral Therapy, 3, 4-7. http://www.science.uva.nl/research/scs/papers/archive/Sloot2008e.pdf [details]

Sloot, P., Coveney, P., Bubak, M. T., Vandamme, A-M., Ó Nualláin, B., van de Vijver, D., & Boucher, C. (2008). Multi-science decision support for HIV drug resistance treatment. Studies in Health Technology and Informatics, 138, 188-198. http://www.science.uva.nl/research/scs/papers/archive/Sloot2008c.pdf [details]

Tirado-Ramos, A., Sloot, P. M. A., & Bubak, M. (2008). Gridbased interactive decision support in biomedicine. In E-G. Talbi, & A. Y. Zomaya (Eds.), Grid computing for bioinformatics and computational biology (pp. 225-246). (Wiley series on bioinformatics : computational techniques and engineering). Wiley. https://doi.org/10.1002/9780470191637.ch10 [details]

2007

Axner, L., Hoekstra, A. G., & Sloot, P. M. A. (2007). Simulating Time Harmonic Flows with the Lattice Boltzmann Method. Physical Review E, 036709. http://www.science.uva.nl/research/scs/papers/archive/Axner2007b.pdf [details]

Axner, L., Lätt, J., Hoekstra, A. G., Chopard, B., & Sloot, P. M. A. (2007). Simulating Time Harmonic Flows with the Regularized L-BGK Method. International Journal of Modern Physics C, 18, 661-666. https://doi.org/10.1142/S0129183107010917 [details]

Bubak, M. T., Gubala, T., Kasztelnik, M., Malawski, M., Nowakowski, P., & Sloot, P. M. A. (2007). Collaborative Virtual Laboratory for e-Health. In P. Cunningham, & M. Cunningham (Eds.), Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings (pp. 537-544). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Bubak2007a.pdf [details]

Ertaylan, G., & Sloot, P. M. A. (2007). A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressure. In Reviews in Antiretroviral Therapy (Vol. 2). http://www.hivpresentation.com/index.cfm?vid=EDE8FB47-423A-F6F7-C0921A2B09F679C8

Hoekstra, A. G., & Sloot, P. M. A. (2007). Modelleren en Simuleren. In T. M. A. Bemelmans, M. van Keulen, R. J. Kusters, & M. Looijen (Eds.), ICT-Zakboek (PBNA Polyzakboekjes). Den Haag: Reed Business Information. [details]

Hoekstra, A. G., Portegies Zwart, S., Bubak, M., & Sloot, P. M. A. (2007). Towards distributed petascale computing. In D. A. Bader (Ed.), Petascale computing: Algorithms and applications (pp. 147-164). (Chapman & Hall/CRC Computational Science; No. 1). Chapman & Hall/CRC. http://arxiv.org/PS_cache/astro-ph/pdf/0703/0703485v1.pdf [details]
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Krzhizhanovskaya, V. V., Gorbachev, Y. E., Zatevakhin, M. A., & Sloot, P. M. A. (2007). Virtual Reactor -- Computational Environment for Multidimensional Simulation of Plasma Chemical Processing. In Proceedings of the XV International Conference on Computational Mechanics and Modern Applied Software Systems Alushta, Ukraine: MAI.

Mo'scicki, J., Bubak, M. T., Lee, H. C., Muraru, A., & Sloot, P. M. A. (2007). Quality of Service on the Grid with User Level Scheduling. In M. T. Bubak, M. Turala, & K. Wiatr (Eds.), CGW'06 Proceedings (pp. 119-129). http://www.science.uva.nl/research/scs/papers/archive/Moscicki2007a.pdf [details]

Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2007). Performance Modeling of 2D Cellular Automata on FPGA. In K. Bertels, W. Najjar, A. van Genderen, & S. Vassiliadis (Eds.), International Conference on Field Programmable Logic and Applications, FPL 2007 (pp. 74-78). IEEE. http://www.ieeexplore.ieee.org/xpl/freeabs_all.jsp?isnumber=4380602&arnumber=4380628&count=173&index=25 [details]

Murtaza, S., Hoekstra, A. G., & Sloot, P. M. A. (2007). Performance evaluation of FPGA-based Cellular Automata accelerators. In Proceedings of the Third Annual Reconfigurable Systems Summer Institute (RSSI'07) Reconfigurable Systems Summer Institute. http://rssi.ncsa.uiuc.edu/proceedings/papers/rssi07_01_paper.pdf [details]

Qiu, G., Kandhai, B. D., & Sloot, P. M. A. (2007). Understanding the complex dynamics of stock markets through cellular automata. Physical Review E, 75, 046116. http://www.science.uva.nl/research/scs/papers/archive/Qiu2007a.pdf [details]

Rycerz, K. J., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2007). Multiple HLA Federate Processes in Grid Environment. In M. T. Bubak, M. Turala, & K. Wiatr (Eds.), CGW'06 Proceedings (pp. 293-294). http://www.science.uva.nl/research/scs/papers/archive/Rycerz2007b.pdf [details]

Rycerz, K. J., Tirado Ramos, A., Gualandris, A., Portegies Zwart, S. F., Bubak, M. T., & Sloot, P. M. A. (2007). Interactive N-Body simulations on the Grid: HLA versus MPI. International Journal of High Performance Computing Applications, 21, 210-221. http://www.science.uva.nl/research/scs/papers/archive/Rycerz2007a.pdf [details]

Sloot, P. M. A., & Hoekstra, A. G. (2007). Modeling Dynamic Systems with Cellular Automata. In P. A. Fishwick (Ed.), Handbook of Dynamic System Modeling (pp. 21.1-21.19). (CRC Computer & Information Science series). Chapman & Hall. http://www.science.uva.nl/research/scs/papers/archive/Sloot2007b.pdf [details]

Sloot, P. M. A., Tirado Ramos, A., & Bubak, M. T. (2007). Multi-Science Decision Support for HIV Drug Resistance Treatment. In P. Cunningham, & M. Cunningham (Eds.), Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings (pp. 597-606). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Sloot2007d.pdf [details]

2006

Abrahamyan, L., Bernsdorf, J. M., Zeiser, T., Lammers, P., Hoekstra, A. G., & Sloot, P. M. A. (2006). MPI parallelization and performance aspects of a graph based LB flow solver. In Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland [details]

Abrahamyan, L., Hoekstra, A. G., & Sloot, P. M. A. (2006). Choosing Optimal L-BGK Simulation Parameters for Time Harmonic Flows. In Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland [details]

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2006). Mesoscopic simulations of systolic flow in the Human abdominal aorta. Journal of Biomechanics, 39, 873-884. https://doi.org/10.1016/j.jbiomech.2005.01.033 [details]

Artoli, A. M., Hoekstra, A. G., & Sloot, P. M. A. (2006). Optimizing lattice Boltzmann simulations for unsteady flows. Computers & fluids, 35(2), 227-240. Advance online publication. https://doi.org/10.1016/j.compfluid.2004.12.002 [details]

Krzhizhanovskaya, V. V., Korkhov, V. V., Tirado-Ramos, A., Groen, D. J., Shoshmina, I. V., Valuev, I. A., Morozov, I. V., Malyshkin, N. V., Gorbachev, Y. E., & Sloot, P. M. A. (2006). Computational Engineering on the Grid: Crafting a Distributed Virtual Reactor. In E-Science 2006 : Second IEEE International Conference on e-Science and Grid Computing: 4-6 December 2006, Amsterdam, Netherlands Article 101 IEEE Computer Society. https://doi.org/10.1109/E-SCIENCE.2006.261185 [details]

Krzhizhanovskaya, V. V., Korkhov, V., & Sloot, P. M. A. (2006). Virtual Reactor: a distributed computing environment for simulation of plasma chemical processes on heterogeneous resources of the Grid. In All-Russian conference "Scientific services on the Internet: Parallel Programming Technologies" Novorossiysk, Russia. [details]

Krzhizhanovskaya, V. V., Sloot, P. M. A., & Gorbachev, Y. E. (2006). Modeling of Plasma Chemical Deposition and Degradation of Silicon Thin Films. In E. E. Gdoutos (Ed.), Fracture of Nano and Engineering Materials and Structures: proceedings of the 16th European Conference of Fracture, Alexandroupolis, Greece, July 3–7, 2006 (pp. 1347-1348). Springer. https://doi.org/10.1007/1-4020-4972-2_669 [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., Sloot, P. M. A., & Hogeweg, P. (2006). Problem-Solving Environments for Biological Morphogenesis. IEEE Computational Science and Engineering, 8, 61-72. http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/mags/cs/&toc=comp/mags/cs/2006/01/c1toc.xml&DOI=10.1109/MCSE.2006.11 [details]

Rycerz, K. J., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2006). A Grid Service for Management of Multiple HLA Federate Processes. In R. Wyrzykowski, J. J. Dongarra, N. Meyer, & J. Wasniewski (Eds.), Parallel Processing and Applied Mathematics: 6th International Conference (PPAM) 2005, Revised selected papers (Vol. 3911, pp. 699-706). Springer. http://www.science.uva.nl/research/scs/papers/archive/Rycerz2006a.pdf [details]

Rycerz, K. J., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2006). Grid support for HLA-based collaborative environment for vascular reconstruction. In P. M. A. Sloot, G. D. van Albada, M. T. Bubak, & A. Trefethen (Eds.), 2nd IEEE International Conference on e-Science and Grid Computing (pp. 48). IEEE.

Rycerz, K. J., Bubak, M. T., Sloot, P. M. A., & Getov, V. S. (2006). Problem solving environment for distributed interactive applications. In S. Gorlatch, M. T. Bubak, & T. Priol (Eds.), Integrated Research in Grid Computing, Integration Workshop (pp. 129-140). Academic Computing Centre CYFRONET AGH. http://www.science.uva.nl/research/scs/papers/archive/Rycerz2006c.pdf [details]

Scarpa, M., Belleman, R. G., Sloot, P. M. A., & de Laat, C. T. A. M. (2006). Highly interactive distributed visualization. Future Generation Computer Systems, 22(8), 896-900. https://doi.org/10.1016/j.future.2006.03.004 [details]

Sloot, P. (2006). To the readers of future generation computer systems. Future Generation Computer Systems, 22(1-2), 1. https://doi.org/10.1016/j.future.2005.09.005

Sloot, P. M. A., Altintas, I., Bubak, M. T., Boucher, C., & Tirado Ramos, A. (2006). From Molecule to Man: Decision Support in Individualized E-Health. Computer, 39(11).

Sloot, P. M. A., Tirado Ramos, A., Altintas, I., Bubak, M. T., & Boucher, C. A. (2006). From Molecule to Man: Decision Support in Individualized E-Health. Computer, 39, 40-46. http://www.science.uva.nl/research/scs/papers/archive/Sloot2006b.pdf [details]

Tirado Ramos, A., & Sloot, P. M. A. (2006). A Conceptual Grid Architecture for Interactive Biomedical Applications. In 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS'06) (pp. 762-767). IEEE. http://www.science.uva.nl/research/scs/papers/archive/Tirado-Ramos2006a.pdf [details]

Vrugt, J. A., Ó Nualláin, B., Robinson, B. A., Bouten, W., Dekker, S. C., & Sloot, P. M. A. (2006). Application of parallel computing to stochastic parameter estimation in environmental models. Computers & Geosciences, 32(8), 1139-1155. https://doi.org/10.1016/j.cageo.2005.10.015 [details]

2005

Abrahamyan, L., Schaap, J. A., Hoekstra, A. G., Shamonin, D. P., Box, F. M. A., van der Geest, R. J., ... Sloot, P. M. A. (2005). A Problem Solving Environment for Image-Based Computational Hemodynamics. Lecture Notes in Computer Science, 3514, 287-294. [details]

Hoekstra, A. G., & Sloot, P. M. A. (2005). Introducing Grid Speedup Gamma: A Scalability Metric for Parallel Applications on the Grid. Lecture Notes in Computer Science, 3470, 534-543. [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2005). Towards Grid-Aware Time Warp. Simulation, 81(4), 293-306. https://doi.org/10.1177/0037549705055015 [details]

Kaandorp, J. A., Sloot, P. M. A., Merks, R. M. H., Bak, R. P. M., Vermeij, M. J. A., & Maier, C. (2005). Morphogenesis of the branching reef coral Madracis mirabilis. Proceedings of the Royal Society B-Biological Sciences, 272, 127-133. https://doi.org/10.1098/rspb.2004.2934 [details]

Krzhizhanovskaya, V. V., Sloot, P. M. A., & Gorbachev, Y. E. (2005). Grid-based Simulation of Industrial Thin Film Production. In SIMULATION: Transactions of The Society for Modeling and Simulation International (Vol. 81, pp. 77-85) [details]
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Kvaloy, T. A., Rongen, E., Tirado Ramos, A., & Sloot, P. M. A. (2005). Automatic Composition and Selection of Semantic Web Services. Lecture Notes in Computer Science, 3470, 184-192. [details]

Rycerz, K., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2005). HLA Grid based support for simulation of vascular reconstruction. In S. Gorlatch, & M. Danelutto (Eds.), Proceedings of the CoreGRID Workshop "Integrated Research in Grid Computing" (pp. 165-174). University of Pisa, Computer Science Department. [details]

Rycerz, K., Bubak, M., Malawski, M., & Sloot, P. (2005). A Framework for HLA-Based Interactive Simulations on the Grid. Simulation, 81(1), 67-76. https://doi.org/10.1177/0037549705051970 [details]

Sloot, P. M. A. (2005). Preface. In Future Generation Computer Systems [details]

Sloot, P. M. A., Boucher, C. A., Bubak, M. T., Hoekstra, A. G., Plaszczak, P., Postumus, A., ... Tirado Ramos, A. (2005). VIROLAB - A virtual Laboratory for Decision Support in Viral Diseases Treatment. In Cracow Grid Workshop [details]

Sloot, P. M. A., Boukhanovsky, A. V., Keulen, W., & Boucher, C. A. B. (2005). A Grid-based HIV Expert System. In Proc. 5th International Symposium on Cluster Computing and Grid Cardiff: IEEE. [details]

Sloot, P. M. A., Boukhanovsky, A. V., Keulen, W., Tirado Ramos, A., & Boucher, C. A. B. (2005). A Grid-Based Hiv Expert System. Journal of Clinical Monitoring and Computing, 19(4-5), 263-278. https://doi.org/10.1007/s10877-005-0673-2 [details]
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Tirado Ramos, A., Groen, D. J., & Sloot, P. M. A. (2005). Exploring OGSA Interoperability with LCG-based Production Grids for Biomedical Applications. In Cracow Grid Workshop 2005 [details]

Tirado Ramos, A., Groen, D. J., & Sloot, P. M. A. (2005). On-line Application Performance Monitoring of Blood Flow Simulation in Computational Grid Architectures. In Proceedings 18th IEEE Symposium on Computer-Based Medical Systems (pp. 511-516). Dublin. [details]

Tirado Ramos, A., Shamonin, D. P., Shulakov, R., Groen, D. J., Hoekstra, A. G., van Albada, G. D., ... Sloot, P. M. A. (2005). Interactive Problem Solving Environments on the Grid for Image-based Computational Haemodynamics. In The CrossGrid Book European CrossGrid Consortium. [details]

Tirado Ramos, A., Tsouloupas, G., Dikaiakos, M. D., & Sloot, P. M. A. (2005). Grid Resource Selection by Application Benchmarking: a Computational Haemodynamics Case Study. Lecture Notes in Computer Science, 3514, 534-543. [details]

Voogd, J. M., Sloot, P. M. A., & van Dantzig, R. (2005). Equilibrium spherically curved two-dimensional Lennard-Jones systems. Journal of Chemical Physics, 123(084105), 1-5. [details]
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P SlootJCP123v2005.pdf
169049.pdf

Zhao, Z., Belloum, A. S. Z., Sloot, P. M. A., & Hertzberger, L. O. (2005). Agent Technology and Generic Workflow Management in an e-Science Environment. Lecture Notes in Computer Science, 3795, 480-485. [details]

Zhao, Z., Belloum, A. S. Z., Sloot, P. M. A., & Hertzberger, L. O. (2005). Agent technology and scientific workflow management in an e-Science environment. In Proceedings of the 17th IEEE International conference on Tools with Artificial Intelligence (pp. 19-23). Hongkong: IEEE Computer Society Press. [details]

Zhao, Z., Belloum, A. S. Z., Wibisono, A., Terpstra, F., Boer, P. T., Sloot, P. M. A., & Hertzberger, L. O. (2005). Scientific workflow management: between generality and applicability. In Proceedings of the International Workshop on Grid and Peer-to-Peer based Workflows in conjunction with the 5th International Conference on Quality Software Melbourne: IEEE Computer Society Press. [details]

Zhao, Z., Belloum, A. S. Z., Yakali, H. H., & Sloot, P. M. A. (2005). Dynamic Workflow in a Grid Enabled Problem Solving Environment. In Proceedings of the 5th International Conference on Computer and Information Technology (pp. 339-345). Shanghai: IEEE Computer Society Press. [details]

Zhao, Z., van Albada, D., & Sloot, P. (2005). Agent-based flow control for HLA components. Simulation, 81(7), 487-501. https://doi.org/10.1177/0037549705058060 [details]

Zhao, Z., van Albada, G. D., & Sloot, P. M. A. (2005). Rapid Prototyping of Complex Interactive Simulation Systems. In Proceedings 10th IEEE International Conference on Engineering of Complex Computer Systems (pp. 366-375). Shanghai: IEEE Computer Society Press. [details]

Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2005). Bringing Combined Interaction to a Problem Solving Environment for Vascular Reconstruction. Future Generation Computer Systems, 21(7), 1167-1176. https://doi.org/10.1016/j.future.2004.04.004 [details]

2004

Artoli, A. M. M., Kandhai, D., Hoefsloot, H. C. J., Hoekstra, A. G., & Sloot, P. M. A. (2004). Lattice BGK simulations of flow in a symmetric bifurcation. Future Generation Computer Systems, 20(6), 909-916. https://doi.org/10.1016/j.future.2003.12.002 [details]

Cramer, H. S. M., Evers, V., Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). Context analysis to support development of virtual reality applications. Virtual Reality, 7(3-4), 177-186. [details]

Cramer, H. S. M., Evers, V., Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). Heuristic evaluation and context analysis to aid the development of a simulated vascular reconstruction system. In Proceedings Virtual Reality Design and Evaluation Workshop Nottingham. [details]

Cramer, H. S. M., Evers, V., Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). Usability Evaluation of a Simulated Vascular Reconstruction System. In Proceedings of the VIRART Virtual Reality Design and Evaluation Workshop 2004 University of Nottingham, United Kingdom.

Cramer, H. S. M., Evers, V., Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). Usability Evaluation of a Simulated Vascular Reconstruction System. In Proceedings of the VIRART Virtual Reality Design and Evaluation Workshop 2004 University of Nottingham. [details]

Gavidia, D. P., Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). A Client-Server Engine for Parallel Computation of High-Resolution Planes. Lecture Notes in Computer Science, 3038, 970-977. [details]

Gorbachev, Y. E., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2004). Using GRID technologies for simulation of complex physical-chemical systems. In Proceedings of the XI All-Russian conference Telematika'2004 (Vol. 1, pp. 165-167). Moscow: SPbSU ITMO "Informika". [details]

Hoekstra, A. G., van 't Hoff, J., Artoli, A. M. M., & Sloot, P. M. A. (2004). Unsteady flow in a 2D elastic tube with the LBGK method. Future Generation Computer Systems, 20(6), 917-924. https://doi.org/10.1016/j.future.2003.12.003 [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2004). Towards Grid-aware Time Warp. In Proceedings of the 18th Workshop on Parallel and Distributed Simulation (pp. 63-70). Kufstein: IEEE Computer Society. [details]

Krzhizhanovskaya, V. V., Gorbachev, Y. E., & Sloot, P. M. A. (2004). A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition. In Proceedings of the International conference "Distributed Computing and Grid Technologies in Science and Education" Dubna, Russia. [details]

Krzhizhanovskaya, V. V., Zatevakhin, M. A., Ignatiev, A. A., Gorbachev, Y. E., Goedheer, W. J., & Sloot, P. M. A. (2004). A 3D Virtual Reactor for Simulation of Silicon-Based Film Production. In Proceedings of the 5th International Bi-Annual ASME/JSME Symposium on Computational Technologies forFluid/Thermal/Structural/Chemical Systems with Industrial Applications (Vol. 491-2, pp. 59-68). San Diego. [details]

Leskes, B., & Sloot, P. M. A. (2004). Unlearning Phenomena in Co-evolution of Non-uniform Cellular Automata. Lecture Notes in Computer Science, 3305, 172-181. [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2004). Polyp oriented modelling of coral growth. Journal of Theoretical Biology, 228(4), 559-576. https://doi.org/10.1016/j.jtbi.2004.02.020 [details]

Rycerz, K. J., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2004). Interactive Grid Computing: Adapting High Level Architecture-based Applications to the Grid. TASK Quarterly, Scientific Bulletin of the Academic Centre of Gdansk, 8, 549-559. http://www.science.uva.nl/research/scs/papers/archive/Rycerz2004c.pdf

Rycerz, K., Balis, B., Szymacha, R., Bubak, M. T., & Sloot, P. M. A. (2004). Monitoring of HLA Grid Application Federates with OCM-G. In S. J. Turner, D. Roberts, & L. Wilson (Eds.), Proceedings of the Eighth IEEE International Symposium on Distributed Simulation and Real-Time Applications (pp. 125-132). Budapest: IEEE. [details]

Rycerz, K., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2004). Support for Effective and Fault Tolerant Execution of HLA-Based Applications in the OGSA Framework. Lecture Notes in Computer Science, 3038, 848-855. [details]

Sloot, P. M. A., Tirado-Ramos, A., Hoekstra, A. G., & Bubak, M. (2004). An interactive grid environment for non-invasive vascular reconstruction. In CCGrid 2004 : 2004 IEEE International Symposium on Cluster Computing and the Grid : April 19-22, 2004, Chicago, IL (pp. 309-319). IEEE. https://doi.org/10.1109/CCGrid.2004.1336582 [details]

Sloot, P. M. A., Tirado-Ramos, A., Hoekstra, A. G., & Bubak, M. (2004). An interactive grid for non-invasive vascular reconstruction. In 2004 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2004 (pp. 309-319)

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2004). Performance modeling of distributed hybrid architectures. IEEE Transactions on Parallel and Distributed Systems, 15(1), 81-92. https://doi.org/10.1109/TPDS.2004.1264788 [details]

Tirado Ramos, A., Sloot, P. M. A., Hoekstra, A. G., & Bubak, M. T. (2004). An integrative approach to high-performance biomedical problem solving environments on the Grid. Parallel Computing, 30(9-10), 1037-1055. https://doi.org/10.1016/j.parco.2004.07.010 [details]

Zajac, K., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2004). Execution and Migration Management of HLA-Based Interactive Simulations on the Grid. Lecture Notes in Computer Science, 3019, 872-879. [details]

Zajac, K., Tirado-Ramos, A., Zhao, Z., Sloot, P. M. A., & Bubak, M. (2004). Grid Services for HLA-based Distributed Simulation Frameworks. In F. Firnandez Rivera, M. Bubak, & A. Gsmez Tato (Eds.), Grid computing: Grid computing : First European across grids conference, Santiago de Compostela, Spain, February 13-14, 2003 (pp. 147-154). (Lecture Notes in Computer Science). Springer. [details]

Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2004). Multi-modal Interaction in Biomedicine. Lecture Notes in Computer Science, 3345, 184-201. [details]

2003

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2003). Simulation of a Systolic Cycle in a Realistic Artery with the Lattice Boltzmann BGK Method. International Journal of Modern Physics C, 17(1 en 2), 95-98. [details]

Artoli, A. M. M., Kandhai, B. D., Hoefsloot, H. C. J., Hoekstra, A. G., & Sloot, P. M. A. (2003). Lattice Boltzmann, a robust and accurate solver for interactive computational hemodynamics. In P. M. A. Sloot, D. Abrahamson, A. V. Bagdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science - ICCS 2003 (Vol. 2657, pp. 1034-1043). Melbourne, Australia and St. Petersburg, Russia: Springer Verlag. [details]

Artoli, A. M., Hoekstra, A. G., & Sloot, P. M. A. (2003). Accelerated lattice BGK method for unsteady simulations through Mach number annealing. International Journal of Modern Physics C, 14(6), 835-847. https://doi.org/10.1142/S012918310300498X [details]

Hoekstra, A. G., van 't Hoff, J., Artoli, A. M. M., & Sloot, P. M. A. (2003). Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science - ICCS 2003 (Vol. 2657, pp. 997-1006). Melbourne, Australia and St. Petersburg, Russia: Springer Verlag. [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2003). Time Warp Cancellation Optmisations on High Latency Networks. In S. J. Turner, & S. J. E. Taylor (Eds.), Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications (DS-RT 2003) (pp. 128-135). Delft, The Netherlands: IEEE Computer Society. [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2003). Time Warp cancellation optimizations on high latency networks. In S. J. E. Taylor, & S. J. Turner (Eds.), Proceedings - 7th IEEE International Symposium on Distributed Simulation and Real-Time Applications, DS-RT 2003 (pp. 128-135). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DISRTA.2003.1243006

Kaandorp, J. A., Koopman, E. A., Sloot, P. M. A., Bak, R. P. M., Vermeij, M. J. A., & Lampmann, L. E. H. (2003). Simulation and analysis of flow patterns around the scleractinian coral Madracis mirabilis (Duchassaing and Michelotti). Philosophical Transactions of the Royal Society B - Biological Sciences, 358(1437), 1551-1557. https://doi.org/10.1098/rstb.2003.1339 [details]

Kiryukhin, I., Saskov, K., Boukhanovsky, A. V., Keulen, W., Boucher, C. A. B., & Sloot, P. M. A. (2003). Stochastic Modeling of Temporal Variabilitiy of HIV-1 Population. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science-ICCS 2003 (Vol. 2657, pp. 125-135). Melbourne, Australia and St. Petersburg, Russia: Springer Verlag. [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2003). Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In V. Capasso (Ed.), Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002 (pp. 539-544). MIRIAM (Milan Res. C. for Industr. and Applied Math). [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2003). Diffusion-limited Aggregation in Laminar Flows. International Journal of Modern Physics C, 14(9), 1171-1182. https://doi.org/10.1142/S0129183103005297 [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2003). Problem Solving Environment for Modelling Stony Coral Morphogenesis. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science - ICCS 2003 (Vol. 2657, pp. 639-648). Melbourne, Australia: Springer Verlag. [details]

Merks, R., Hoekstra, A., Kaandorp, J., & Sloot, P. (2003). Models of coral growth: spontaneous branching, compactification and the Laplacian growth assumption. Journal of Theoretical Biology, 224(2), 153-166. https://doi.org/10.1016/S0022-5193(03)00140-1 [details]

Sloot, P. M. A., Boucher, C. A. B., Kiryukhin, I., Saskov, K., & Boukhanovsky, A. V. (2003). A grid-based problem-solving environment for biomedicine. In S. Norager (Ed.), Proceedings of the First European HealthGrid Conference (pp. 300-323). Commission of the European Communities, Inf. Soc. Dir-Gen.. [details]

Sloot, P. M. A., van Albada, G. D., & Zudilova-Seinstra, E. V. (2003). Grid-based Interactive Visualisation of Medical Images. In S. Norager (Ed.), Proceedings of the First European HealthGrid Conference (pp. 57-66). Brussels, Belgium: Commission of the European Communities, Inf. Soc. Dir-Gen.. [details]

Tirado Ramos, A., Zajac, K., Zhao, Z., Sloot, P. M. A., van Albada, G. D., & Bubak, M. T. (2003). Experimental Grid Access for Dynamic Discovery and Data Transfer in Distributed Interactive Simulation Systems. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science - ICCS 2003, Proceedings Part I (Vol. 2657, pp. 284-292). Heidelberg: Springer Verlag. [details]

Zajac, K., Bubak, M. T., Malawski, M., & Sloot, P. M. A. (2003). Towards a Grid Management System for HLA-Based Interactive Simulations. In S. J. Turner, & S. J. E. Taylor (Eds.), Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications (pp. 4-11). Delft, The Netherlands: IEEE Computer Society. [details]

Zhao, Z., van Albada, G. D., & Sloot, P. M. A. (2003). Interaction scenario: orchestrating agents in a multi-agent system. In J-P. Muller, & M-M. Seidel (Eds.), Proceedings of the 4th workshop on agent-based simulation (pp. 155-160). Montpellier, France. [details]

Zhao, Z., van Albada, G. D., Tirado-Ramos, A., Zajac, K., & Sloot, P. M. A. (2003). ISS-Studio: a prototype for a user-friendly tool for designing interactive experiments in Problem Solving Environments. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational science - ICCS 2003: International conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003 : proceedings (Vol. 1, pp. 679-688). (Lecture Notes in Computer Science; Vol. 2657). Springer. [details]

Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2003). Virtual Reality and Desktop as a Combined Interaction-Visualisation Medium for a Problem-Solving Environment. In P. M. A. Sloot, D. Abrahamson, A. V. Bogdanov, J. J. Dongarra, A. Y. Zomaya, & Y. E. Gorbachev (Eds.), Computational Science - ICCS 2003, Proceedings Part III (Vol. 2659, pp. 1025-1034). Springer Verlag. [details]

2002

Afsarmanesh, H., Belleman, R. G., Belloum, A. S. Z., Benabdelkader, A., van den Brand, J. F. J., Eijkel, G. B., Frenkel, A., Garita, C., Groep, D. L., Heeren, R. M. A., Hendrikse, Z. W., Hertzberger, L. O., Kaandorp, J. A., Kaletas, E. C., Korkhov, V., de Laat, C. T. A. M., Sloot, P. M. A., Vasunin, D., Visser, A., & Yakali, H. H. (2002). VLAM-G: A Grid-based virtual laboratory. Scientific Programming, 10(2), 173-181. [details]

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2002). 3D Pulsatile flow with the Lattice Boltzmann BGK Method. International Journal of Modern Physics C, 13(8), 1119-1134. https://doi.org/10.1142/S0129183102003826 [details]

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2002). Accuracy of 2D pulsatile flow in the lattice Boltzmann BGK method. In P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, & A. G. Hoekstra (Eds.), LNCS; Computational Science - ICCS 2002, Proceedings Part I (Vol. 2329, pp. 361-370). Springer Verlag. [details]

Belleman, R. G., & Sloot, P. M. A. (2002). Dynamic Exploration Environments. In J. Meij (Ed.), Dealing with the data flood (mining data, text and multimedia (pp. 771-787). The Hague: STT/Beweton. [details]

Bubak, M. T., Zbik, D., van Albada, G. D., Iskra, K. A., & Sloot, P. M. A. (2002). Portable Library of Migratable Sockets. Scientific Programming, 9, 211-222. http://iospress.metapress.com/openurl.asp?genre=issue&issn=1058-9244&volume=9&issue=4 [details]

Ghulghazaryan, R. G., Ananikian, N. S., & Sloot, P. M. A. (2002). Yang-Lee zeros of the Q-state Potts model on recursive lattices. Physical Review E, 66, 1-9. http://prola.aps.org/abstract/PRE/v66/i4/e046110

Iskra, K. A., Belleman, R. G., van Albada, G. D., Santoso, J., Sloot, P. M. A., Bal, H. E., Spoelder, H. J. W., & Bubak, M. T. (2002). The Polder Computing Environment, a system for interactive distributed simulation. Concurrency and Computation: Practice and Experience, 14, 1313-1335. https://doi.org/10.1002/cpe.692 [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2002). Rollbacks in Time Warp - Analysis and Modelling. In E. F. Deprettere, A. S. Z. Belloum, J. W. J. Heijnsdijk, & F. van der Stappen (Eds.), ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging (pp. 88-94). ASCI. [details]

Kandhai, B. D., Hlushkou, D., Hoekstra, A. G., Sloot, P. M. A., van As, H., & Tallarek, U. (2002). Influence of Stagnant Zones on Transient and Asymptotic Dispersion in Macroscopically Homogeneous Porous Media. Physical Review Letters, 88(23), 1-4. [details]

Kandhai, B. D., Tallarek, U., Hlushkou, D., Hoekstra, A., Sloot, P. M. A., & Van As, H. (2002). Numerical simulation and measurement of liquid hold-up in biporous media containing discrete stagnant zones. Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 360(1792), 521-534. https://doi.org/10.1098/rsta.2001.0952 [details]

Krzhizhanovskaya, V. V., Zatevakhin, M. A., Ignatiev, A. A., Gorbachev, Y. E., & Sloot, P. M. A. (2002). Distributed Simulation of Silicon-Based Film Growth. In R. Wyrzykowski, J. Dongarra, M. Paprzycki, & J. Wasniewski (Eds.), Parallel Processing and Applied Mathematics, 4th International Conference, PPAM 2001, Naleczow, Poland (pp. 879-887). Springer. https://doi.org/10.1007/3-540-48086-2 [details]

Merks, R. M. H., Hoekstra, A. G., & Sloot, P. M. A. (2002). The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits. Journal of computational Physics, 183, 563-576. https://doi.org/10.1006/jcph.2002.7209 [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2002). Spontaneous branching in a polyp oriented model of stony coral growth. In P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, & A. G. Hoekstra (Eds.), Computational Science- ICCS 2002, Proceedings Part I (Vol. 2329, pp. 88-96). Springer Verlag. [details]

Overeinder, B. J., Schoneveld, A., & Sloot, P. M. A. (2002). Self-Organized Criticality in Optimistic Simulation of Correlated Systems. Parallel and Distributed Computing Practices, 4(1), 61-75. [details]

Santoso, J., van Albada, G. D., Basaruddin, T., & Sloot, P. M. A. (2002). A Simulation Environment for Job Scheduling on Distributed Systems. In P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, & A. G. Hoekstra (Eds.), Computational Science - ICCS 2002, Proceedings Part I (Vol. 2329, pp. 653-662). Springer Verlag. [details]

Sloot, P. M. A., Chen, F., & Boucher, C. A. B. (2002). Cellular Automata Model of Drug Therapy for HIV Infection. In S. Bandini, B. Chopard, & M. Tomassini (Eds.), 5th International Conference on Cellular Automata for Research and Industry, ACRI 2002 (Vol. 2493, pp. 282-293) [details]

Sloot, P. M. A., Tan, C. J. K., Dongarra, J. J., & Hoekstra, A. G. (2002). Computational Science - ICCS 2002, Proceedings Part II. In Lecture Notes in Computer Science (Vol. 2330). Springer Verlag. [details]

Sloot, P. M. A., Tan, C. J. K., Dongarra, J. J., & Hoekstra, A. G. (2002). Computational Science - ICCS 2002, Proceedings Part III. In Lecture Notes in Computer Science (Vol. 2331). Springer Verlag. [details]

Spinnato, P. F., Portegies Zwart, S. F., Fellhauer, M., van Albada, G. D., & Sloot, P. M. A. (2002). Tools and techniques for N-body Simulations. In R. Capuzzo Dolcetta (Ed.), Proceedings of the 1st workshop on Computational Astrophysics in Italy SAIt. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2002). A Versatile Simulation Model for Hiërarchical Treecodes. In P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, A. G. Hoekstra, & G. D. Albada (Eds.), Computational Science - ICCS 2002, Proceedings Part I (Vol. 2329, pp. 176-185). Springer Verlag. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2002). Performance Modelling of Hiërarchical N-body Codes Running on Hybrid Architectures. In E. F. Deprettere, A. S. Z. Belloum, J. W. J. Heijnsdijk, & V. D. F. Stappen (Eds.), ASCI 2002, Proceedings of the eight annual conference of the Advanced School for Computing and Imaging (pp. 211-218). Delft: ASCI. [details]

Zajac, K., Bubak, M., Malawski, M., Sloot, P. M. A., & Tirado-Ramos, A. (2002). A Proposal of Services For Managing Interactive Grid Applications. In M. T. Bubak, M. Noga, & M. Turala (Eds.), Second Cracow Grid Workshop (pp. 155-163). ACC Cyfronet UMM. [details]

Zhao, Z., Belleman, R. G., van Albada, G. D., & Sloot, P. M. A. (2002). AG-IVE: an Agent based solution to constructing Interactive Simulation Systems. In P. M. A. Sloot, C. J. K. Tan, J. J. Dongarra, & A. G. Hoekstra (Eds.), Computational Science - ICCS 2002, Proceedings Part I (Vol. 2329, pp. 693-703). Springer Verlag. [details]

Zhao, Z., Belleman, R. G., van Albada, G. D., & Sloot, P. M. A. (2002). Reusability and Efficiency in Constructing Interactive Simulation Systems. In E. F. Deprettere, A. S. Z. Belloum, J. W. J. Heijnsdijk, & F. van der Stappen (Eds.), ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging (pp. 268-275). Delft: ASCI. [details]

Zhao, Z., Belleman, R. G., van Albada, G. D., & Sloot, P. M. A. (2002). Scenario Switches and State Updates in an Agent-based Solution to Constructing Interactive Simulation Systems. In Proceedings of the Communication Networks and Distributed Systems Modeling and Simulation Conference (CNDS 2002) (pp. 3-10) [details]

Zudilova-Seinstra, E. V., & Sloot, P. M. A. (2002). A First Step to a User-Centered Approach to a Development of Adaptive Simulation-Visualization Complexes. In Proc. of the International Conference of the Systemics, Cybernetics and Informatics (pp. 104-110). Orlando, Florida, USA.

Zudilova-Seinstra, E. V., Sloot, P. M. A., & Belleman, R. G. (2002). A Multi-modal Interface for an Interactive Simulated Vascular Reconstruction System. In Fourth IEEE ACMI'02 International Conference on Multimodal Interfaces, Pittsburgh, Pennsylvania (pp. 313-318). Los Alamitos, California, USA: IEEE Computer Society. [details]

van Albada, D., & Sloot, P. (2002). Surfing the grid - Dynamic task migration in the polder metacomputer project. In D. Kranzlmüller, J. Volkert, P. Kacsuk, & J. Dongarra (Eds.), Recent Advances in Parallel Virtual Machine and Message Passing Interface - 9th European PVM/MPI Users' Group Meeting, Proceedings (pp. 4-5). (Lecture Notes in Computer Science; Vol. 2474). Springer Verlag. https://doi.org/10.1007/3-540-45825-5_3

2001

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2001). Time dependent flow in a rigid tube using the Lattice Boltzmann Method. In J. P. Boonand, P. V. Coveney, & S. Succi (Eds.), International Conference on Discrete Simulation of Fluid Dynamics in series Europhysics Conference Abstracts (Vol. 25H, pp. 3) [details]

Artoli, A. M. M., Kandhai, B. D., Hoefsloot, H. G., Hoekstra, A. G., & Sloot, P. M. A. (2001). Shear Stress in Lattice Boltzmann Simulations. In F. Hossfeld, & K. Binder (Eds.), Europhysics Conference on Computational Physics in series Publication Series of the John von Neumann Institute for computing (Vol. 8, pp. A127) [details]

Belleman, R. G., & Sloot, P. M. A. (2001). Simulated vascular reconstruction in a virtual operating theatre. In H. U. Lemke, K. Inamura, A. G. Farman, M. W. Vannier, & K. Doi (Eds.), Computer Assisted Radiology and Surgery (Excerpta Medica, International Congress Series 1230) (pp. 938-944). Elsevier Science B.V.. [details]

Bubak, M. T., Zbik, D., van Albada, G. D., Iskra, K. A., & Sloot, P. M. A. (2001). Migratable Sockets for Dynamic Load Balancing. In L. O. Hertzberger, A. G. Hoekstra, & R. D. Williams (Eds.), Proceedings High Performance Computing and Networking (HPCN Europe 2001) in series LNCS volume 2110 (pp. 23-31). Amsterdam, The Netherlands: Springer Verlag. [details]

Hoekstra, A. G., & Sloot, P. M. A. (2001). Wall effects on density fluctuations in the GBL thermal lattice gas automaton. Computer Physics Communications, 142(1-3), 151-154. https://doi.org/10.1016/S0010-4655(01)00356-3 [details]

Hoekstra, A. G., Frijlink, M. O., Waters, L. B. F. M., & Sloot, P. M. A. (2001). Radiation forces in the discrete-dipole approximation. Journal of the Optical Society of America. A, Optics, Image Science and Vision, 18(8), 1944-1953. https://doi.org/10.1364/JOSAA.18.001944

Kaandorp, J. A., & Sloot, P. M. A. (2001). Morphological Models of Radiate Accretive Growth and the Influence of Hydrodynamics. Journal of Theoretical Biology, 209(3), 257-274. https://doi.org/10.1006/jtbi.2001.2261 [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., & Sloot, P. M. A. (2001). Iterative momentum relaxation for fast lattice-Boltzmann Simulations. Future Generation Computer Systems, 18(1), 89-96. https://doi.org/10.1016/S0167-739X(00)00078-9 [details]

Merks, R. M. H., Hoekstra, A. G., & Sloot, P. M. A. (2001). Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method. In F. Hossfeld, & K. Binder (Eds.), Europhysics Conference on Computational Physics, in series Publication series of the John von Neumann Institute for Computing (Vol. 8, pp. A140). Aachen, Germany. [details]

Merks, R. M. H., Hoekstra, A. G., & Sloot, P. M. A. (2001). Validation of the Lowe-Frenkel tracer dispersion method in the lattice Botzmann method. In R. L. Lagendijk, J. W. J. Heijnsdijk, A. D. Pimentel, & M. H. F. Wilkinson (Eds.), Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging (pp. 137-141). ASCI. [details]

Overeinder, B. J., Schoneveld, A., & Sloot, P. M. A. (2001). Spatio-Temporal Correlations and Rollback Distributions in Optimistic Simulations. In Proceedings of the 15th Workshop on Parallel and Distributed Simulation (pp. 145-152). Lake Arrowhead, CA: IEEE Computer Society.

Overeinder, B. J., Schoneveld, A., & Sloot, P. M. A. (2001). Spatio-Temporal Correlations and Rollback Distributions in Optimistic Simulations. In R. L. Lagendijk, J. W. J. Heijnsdijk, A. D. Pimentel, & M. H. F. Wilkinson (Eds.), Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging (pp. 391-398). ASCI. [details]

Overeinder, B. J., Schoneveld, A., & Sloot, P. M. A. (2001). Spatio-Temporoal Correlations and Rollback Distributions in Optimistic Simulations. In Proceedings of the 15th Workshop on Parllel and Distributed Simulation Lake Arrowhead, CA: IEEE Computer Society.

Sloot, P. M. A., & Chopard, B. (2001). Modeling Fluid Flow using Lattice Gases and the Lattice Boltzmann Model. In J. A. Kaandorp, & J. E. K"ubler (Eds.), The algorithmic beauty of seaweeds, sponges and corals (pp. 99-108). Heidelberg, New York: Springer-Verlag.

Sloot, P. M. A., & Hoekstra, A. G. (2001). Cellular Automata as a Mesoscopic Approach to Model and simulate Complex Systems. In V. N. Alexandrov, J. J. Dongarra, B. A. Juliano, R. S. Renner, & C. J. K. Tan (Eds.), Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series LNCS volume 2074 (II) (Vol. LNCS 2074, pp. 518-527). Heidelberg, New York: Springer Verlag. [details]

Sloot, P. M. A., Kaandorp, J. A., Hoekstra, A. G., & Overeinder, B. J. (2001). Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena. In A. Zomaya, F. Ercal, & S. Olariu (Eds.), Solutions to Parallel and Distributed Computing Problems: Lessons from Biological Sciences (pp. 1-46). Computer Centre University of Tromso. [details]

Sloot, P. M. A., Overeinder, B. J., & Schoneveld, A. (2001). Self-organized criticality in simulated correlated systems. Computer Physics Communications, 142(1-3), 76-81. https://doi.org/10.1016/S0010-4655(01)00325-3 [details]
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Sloot, P. M. A., Spinnato, P. F., & van Albada, G. D. (2001). N-body Simulation on Hybrid Architectures. In V. N. Alexandrov, J. J. Dongarra, B. A. Juliano, R. S. Renner, & C. J. K. Tan (Eds.), Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series LNCS volume 2074 (II) (Vol. LNCS 2074, pp. 883-892). Springer Verlag. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2001). A Simulator for Parallel Hybrid Computer Systems. In R. L. Lagendijk, J. W. J. Heijnsdijk, A. D. Pimentel, & M. H. F. Wilkinson (Eds.), Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging (pp. 210-219). ASCI. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2001). Performance of N-body Codes on Hybrid Machines. Future Generation Computer Systems, 17, 951-959. https://doi.org/10.1016/S0167-739X(01)00037-1 [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2001). Performance prediction of N-body simulations on a hybrid architecture. Computer Physics Communications, 139, 34-44. https://doi.org/10.1016/S0010-4655(01)00225-9 [details]

Weerts, A. H., Kandhai, B. D., Bouten, W., & Sloot, P. M. A. (2001). Tortuosity of an Unsaturated Sandy Soil Estimated using Gas Diffusion and Bulk Soil Electrical Conductivity: Comparing Analogy-based Models and Lattice–Boltzmann Simulations. Soil Science Society of America Journal, 65(6), 1577-1584. https://doi.org/10.2136/sssaj2001.1577 [details]

Zhao, Z., Belleman, R. G., van Albada, G. D., & Sloot, P. M. A. (2001). System integration for interactive simulation systems using intelligent agents. In R. L. Lagendijk, J. W. J. Heijnsdijk, A. D. Pimentel, & M. H. F. Wilkinson (Eds.), Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging (pp. 399-406). ASCI. [details]

2000

Bal, H., Bhoedjang, R., Hofman, R., Jacobs, C., Kielmann, T., Maassen, J., van Nieuwpoort, R., Romein, J., Renambot, L., Rühl, T., Veldema, R., Verstoep, K., Baggio, A., Ballintijn, G., Kuz, I., Pierre, G., van Steen, M., Tanenbaum, A., Doornbos, G., ... van der Steen, A. (2000). The Distributed ASCI supercomputer project. Operating Systems Review, 34(4), 76-96. https://doi.org/10.1145/506106.506115 [details]

Belleman, R. G., & Sloot, P. M. A. (2000). The Design of Dynamic Exploration Environments for Computational Steering Simulations. In M. Bubak, J. Moscinski, & M. Noga (Eds.), Proceedings of the SGI Users' Conference 2000 (pp. 57-74). Academic Computer Centre CYFRONET AGH. [details]

Belleman, R. G., Zhao, Z., van Albada, G. D., & Sloot, P. M. A. (2000). Design considerations for the construction of immersive dynamic exploration environments. In L. J. V. Vliet, J. W. J. Heijnsdijk, T. Kielman, & P. M. W. Knijnenburg (Eds.), ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging (pp. 195-201). Delft: ASCI. [details]

Blaak, R., & Sloot, P. M. A. (2000). Lattice dependence of reaction-diffusion in lattice Boltzmann modelling. Computer Physics Communications, 129, 256-266. https://doi.org/10.1016/S0010-4655(00)00112-0 [details]

Bubak, M. T., Funika, W., Zbik, D., van Albada, G. D., Iskra, K. A., Sloot, P. M. A., ... Sowa-Pieklo, K. (2000). Performance Measurement, Debugging and Load Balancing for Metacomputing. In ISThmus 2000, Research and Development for the Information Society, Conference Proceedings (pp. 409-418). Poznan: Instytut Informatyki, Politechnika Poznanska. [details]

Bubak, M. T., Zbik, D., van Albada, G. D., Iskra, K. A., & Sloot, P. M. A. (2000). Portable Library of Migratable Sockets. In M. Bubak, J. Moscinski, & M. Noga (Eds.), Proceedings of the SGI Users' Conference 2000 (pp. 175-184). Academic Computer Centre CYFRONET AGH. [details]

Claque, D. S., Kandhai, B. D., Zhang, R., & Sloot, P. M. A. (2000). On the Hydraulic Permeability of (Un)Bounded Fibrous Media Using the Lattice-Boltzmann Method. Physical Review E, 61(1), 616-625. https://doi.org/10.1103/PhysRevE.61.616 [details]

Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (2000). Dynamic Structure Factor in Single and Two-Species Thermal GBL Lattice Gas. Computer Physics Communications, 129, 13-20. https://doi.org/10.1016/S0010-4655(00)00088-6 [details]

Hoekstra, A. G., Frijlink, M. O., & Sloot, P. M. A. (2000). Calculation of the radiation forces on each dipole in the discrete dipole approximation. In G. Videen, Q. Fu, & P. Chylek (Eds.), Light Scattering by Nonspherical Particles: Halifax Contributions (pp. 237-240). Army Research Laboratory. [details]

Iskra, K. A., Hendrikse, Z. W., van Albada, G. D., Overeinder, B. J., & Sloot, P. M. A. (2000). Dynamic Migration of PVM Tasks. In L. J. V. Vliet, J. W. J. Heijnsdijk, T. Kielman, & P. M. W. Knijnenburg (Eds.), ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging (pp. 206-212). ASCI. [details]

Iskra, K. A., Hendrikse, Z. W., van Albada, G. D., Overeinder, B. J., & Sloot, P. M. A. (2000). Experiments with Migration of PVM Tasks. In ISThmus 2000, Research and Development for the Information Society, Conference Proceedings (pp. 295-304). Instytut Informatyki, Politechnika Poznanska. [details]

Iskra, K. A., Hendrikse, Z. W., van Albada, G. D., Overeinder, B. J., & Sloot, P. M. A. (2000). Performance Measurements on Dynamite/DPVM. In J. Dongarra, P. Kacsuk, & N. Podhorszki (Eds.), Recent Advances in PVM and MPI - 7th European PVM/MPI User's Group Meeting, in series LNCS volume 1908 (pp. 27-38). Springer Verlag. [details]

Iskra, K. A., Hendrikse, Z. W., van Albada, G. D., Overeinder, B. J., Sloot, P. M. A., & Gehring, J. (2000). Experiments with migration of message passing tasks. In R. Buyya, & M. Baker (Eds.), Grid Computing--Grid 2000: The first IEEE/ACM International Workshop in volume 1971 van LNCS (Vol. LNCS 1971, pp. 203-213). Springer Verlag. [details]

Kandhai, B. D., Soll, W., Chen, S., Hoekstra, A. G., & Sloot, P. M. A. (2000). Finite-Difference Lattice-BGK Methods on Nested Grids. Computer Physics Communications, 129, 100-109. https://doi.org/10.1016/S0010-4655(00)00097-7 [details]

Santoso, J., van Albada, G. D., Nazief, B. A. A., & Sloot, P. M. A. (2000). Hiërarchical Job Scheduling for Clusters of Workstations. In L. J. Vliet, J. W. J. Heijnsdijk, T. Kielmann, & P. M. W. Knijnenburg (Eds.), ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging (pp. 99-105). ASCI. [details]

Santoso, J., van Albada, G. D., Nazief, B. A. A., & Sloot, P. M. A. (2000). Simulating Job Scheduling for Clusters of Workstations. In M. Bubak, H. Afsarmanesh, R. D. Williams, & L. O. Hertzberger (Eds.), Proceedings of the HPCN 2000 Conference, in LNCS volume 1823 (Vol. LNCS 1823, pp. 395-406). Amsterdam, The Netherlands: Springer Verlag. [details]

Santoso, J., van Albada, G. D., Sloot, P. M. A., & Nazief, B. A. A. (2000). Simulation of Hiërarchical Resource Management for Meta-computing Systems. International Journal of Foundations of Computer Science, 12(5), 629-643. [details]

Schoneveld, A., Sloot, P. M. A., Lees, M., & Karyadi, E. (2000). A Framework for Dynamic Load Balancing: A Case Study on Explosive Containment Simulation. Parallel Computing, 26, 737-751. https://doi.org/10.1016/S0167-8191(00)00011-9 [details]

Sloot, P. M. A., Kaandorp, J. A., Hoekstra, A. G., & Overeinder, B. J. (2000). Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena. In A. Zomaya (Ed.), Bio-inspired Computation Wiley. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2000). Performance Analysis of Parallel N-Body Codes. In M. Bubak, H. Afsarmanesh, R. D. Williams, & L. O. Hertzberger (Eds.), Proceedings of the HPCN 2000 Conference, in LNCS volume 1823 (Vol. LNCS 1823, pp. 249-260). Amsterdam: Springer Verlag. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2000). Performance Analysis of Parallel N-body Codes. In L. J. Vliet, J. W. J. Heijnsdijk, T. Kielmann, & P. M. W. Knijnenburg (Eds.), ASCI 2000, Proceedings of the sixth annual conference of the advanced School for Computing and Imaging (pp. 213-220). ASCI. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2000). Performance Modelling of Hybrid Architectures. Computer Physics Communications. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2000). Performance Modelling of Hybrid Architectures. In U. Barberis (Ed.), SIMAI 2000, Sommari--Abstracts (pp. 73-74). Rome: Societa Italiana di Matematica Applicata e Industriale.

1999

Belleman, R. G., Kaandorp, J. A., Dijkman, D., & Sloot, P. M. A. (1999). Geoprove: Geometric probes for virtual environments. In J. A. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999 (Vol. June 1999, pp. 38-43). Delft: ASCI. [details]

Belleman, R. G., Kaandorp, J. A., Sloot, P. M. A., & Dijkman, D. (1999). Geoprove: Geometric probes for virtual environments. Lecture Notes in Computer Science, 1593, 817-827. [details]

Bergman, M., van Albada, G. D., Simon, H., Buchner, H., Sloot, P. M. A., & Friedrich, V. (1999). Brain activity and parallel computing. In J. A. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999 (pp. 44-45). ASCI. [details]

Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1999). Computational aspects of multispecies lattice-gas automata. Lecture Notes in Computer Science, 1593, 339-349. [details]

Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1999). Computational aspects of multispecies lattice-gas automata. In J. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999 (Vol. June 1999, pp. 267-273). Delft: ASCI. [details]

Hoekstra, A. G., Frijlink, M. O., de Kanter, D., & Sloot, P. M. A. (1999). Two new applications of large scale dda simulations. In J. L. Rodriguez, F. Obelleiro, & T. Wriedt (Eds.), Proceedings of the 4th Conference on Electromagnetic and light Scattering by Nonspherical Particles:Theory and Applications (pp. 333-334) [details]

Kaandorp, J. A., & Sloot, P. M. A. (1999). Growth and form of sponges and corals in a moving fluid. In M. Gromov, A. Carbone, & P. Pruzinkiewics (Eds.), Pattern Formation in biology, vision and dynamics (pp. 24-41). Singapore: World Scientific Publishing Company. [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., & Sloot, P. M. A. (1999). Iterative momentum relaxation for fast lattice-boltzmann simulations. Lecture Notes in Computer Science, 1593, 311-318. [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., & Sloot, P. M. A. (1999). Iterative momentum relaxation for fast lattice-boltzmann simulations. In J. A. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999 (pp. 274-278). Delft: ASCI. [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., Kataja, M., Timonen, J., & Sloot, P. M. A. (1999). Implementation aspects of 3d lattice-bgk: Boundaries, accuracy and a new fast relaxation method. Journal of comparative physiology, 150, 482-501. [details]

Kandhai, D., Vidal, DJ-E., Hoekstra, A. G., Hoefsloot, H., Iedema, P., & Sloot, P. M. A. (1999). Lattice-Boltzmann and finite element simulations of fluid flow in a SMRX static mixer reactor. International Journal for Numerical Methods in Fluids, 31(6), 1019-1033. https://doi.org/10.1002/(SICI)1097-0363(19991130)31:6<1019::AID-FLD915>3.0.CO;2-I [details]

Merks, R. M. H., Kaandorp, J. A., & Sloot, P. M. A. (1999). The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies. In Theory and Mathematics in Biology and Medicine: Abstracts (pp. 345)

Overeinder, B. J., & Sloot, P. M. A. (1999). Extensions to time warp parallel simulation for spatial decomposed applications. In R. Cheng, & D. Al-Dabass (Eds.), Proceedings of the Fourth United Kingdom Simulation Society Conference (UKSim 99) (Vol. April 1999, pp. 73). UKSIM. [details]

Schoneveld, A., Lees, M., Karyadi, E., & Sloot, P. M. A. (1999). Dynamic load balancing in parallel finite element simulations. In M. Boasson, J. Kaandorp, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI (Vol. June 1999, pp. 429-434). Delft: ASCI. [details]

Sloot, P. M. A. (1999). High performance simulation with cellular automata. In N. Piskunov (Ed.), Proceedings of HiPer'99, Tromso, Norway, june 27-30 1999 (pp. 169-207). Tromso: Computer Centre University of Tromso. [details]

Sloot, P. M. A. (1999). Simulation and Visualisation in Medical Diagnosis: Perspectives and Computational Requirements. In L. Grandinetti, A. Marsh, & T. Kauranne (Eds.), Advanced Infrastructures for Future Healthcare IEEE-EMBS Press. [details]

Sloot, P. M. A., & Overeinder, B. J. (1999). Extensions to time warp parallel simulation for spatially decomposed applications. In J. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI (Vol. june, pp. 118-124). Delft: ASCI. [details]

Sloot, P. M. A., & Overeinder, B. J. (1999). Time warped automata: Parallel discrete event simulation of asynchronous ca's. In B. Mochnacki, R. Wyrzykowski, H. Piech, & J. Szopa (Eds.), Proceedings of the Third International Conference on Parallel Processing and Applied Mathematics, Kazimierz Dolny, Poland, 14-17 september 1999 (pp. 43-62). Technical University of Czestochowa. [details]

Sloot, P. M. A., Kaandorp, J. A., Hoekstra, A. G., & Overeinder, B. J. (1999). Distributed simulation with cellular automata: Architecture and applications. Lecture Notes in Computer Science, 1725, 203-249. [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (1999). Performance modelling of hybrid parallel systems. In Proceedings of the TUG99 Meeting, Barcelona, Spain, Sept. 1999 [details]

Talia, D., & Sloot, P. M. A. (1999). Cellular automata: Promise and prospects in computational science. Future Generation Computer Systems, 16(2-3,dec.99), v-vii. [details]

van Albada, G. D., Clinckemaillie, J., Emmen, A. H. L., Gehring, J., Heinz, O., van der Linden, F., ... Overeinder, B. J. (1999). Dynamite-blasting obstacles to parallel cluster computing. In J. A. Kaandorp, M. Boasson, J. F. M. Tonino, & M. G. Vosselman (Eds.), Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, june 15-17, 1999 (pp. 31-37). Delft: ASCI. [details]

van Albada, G. D., Clinckemaillie, J., Emmen, A. H. L., Gehring, J., Heinz, O., van der Linden, F., Overeinder, B. J., Reinefeld, A., & Sloot, P. M. A. (1999). Dynamite - blasting obstacles to parallel cluster computing. Lecture Notes in Computer Science, 1593, 300-310. [details]

1998

Belleman, R. G., Kaandorp, J. A., & Sloot, P. M. A. (1998). A virtual environment for the exploration of diffusion and flow phenomena in complex geometries. Future Generation Computer Systems, 14(3/4), 209-214. https://doi.org/10.1016/S0167-739X(98)00024-7 [details]

Belleman, R. G., Kaandorp, J. A., & Sloot, P. M. A. (1998). Interactive environments for the exploration of large data sets. In B. M. ter Haar Romeny, D. H. J. Epema, J. F. M. Tonino, & A. A. Wolters (Eds.), ASCI'98: proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, Lommel, Belgium, June 9-11 1998 (pp. 264-268). Advanced School for Computing and Imaging (ASCI). [details]

Hoekstra, A. G., Grimminck, M. D., & Sloot, P. M. A. (1998). Large scale simulations of elastic light scattering by a fast dipole approximation. International Journal of Modern Physics C, 87-102. [details]

Hoekstra, A. G., Grimminck, M. D., & Sloot, P. M. A. (1998). Large scale simulations of elastic light scattering by a fast discrete dipole approximation. International Journal of Modern Physics C, 9(1), 87-102. https://doi.org/10.1142/S012918319800008X

Hoekstra, A., & Sloot, P. (1998). A parallel fast discrete dipole approximation for large scale simulations of elastic light scattering. In B. M. ter Haar Romeny, D. H. J. Epema, J. F. M. Tonino, & A. A. Wolters (Eds.), ASCI'98 : proceedings of the fourth annual conference of the Advanced School for Computing and Imaging: Lommel, Belgium, June 9-11, 1998 (pp. 73-79). Advanced School for Computing and Imaging. [details]

Hoekstra, A., Rahola, J., & Sloot, P. (1998). Accuracy of internal fields in volume integral equation simulations of light scattering. Applied Optics, 37(36), 8482-8497. https://doi.org/10.1364/AO.37.008482 [details]
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Hoekstra, A., Rahola, J., & Sloot, P. (1998). Internal fields in volume integral equation simulations of light scattering: accuracy and resonances. In M. I. Mishchenko, L. D. Travis, & J. W. Hovenier (Eds.), Proceedings of conference on light scattering by nonspherical particles: theory, measurements and applications (pp. 16-19). American Meteorological Society. [details]

Kandhai, B. D., Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1998). Lattice boltzmann hydrodynamics in centrifugal elutriation chambers. In B. M. ter Haar Romeny, D. H. J. Epema, J. F. M. Tonino, & A. A. Wolters (Eds.), ASCI'98 : proceedings of the fourth annual conference of the Advanced School for Computing and Imaging: Lommel, Belgium, June 9-11, 1998 (pp. 269-274). Advanced School for Computing and Imaging. [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., Kataja, M., Timonen, J., & Sloot, P. M. A. (1998). Lattice Boltzmann Hydrodynamics on Parallel Systems. Computer Physics Communications, 111, 14-26. https://doi.org/10.1016/S0010-4655(98)00025-3 [details]

Kandhai, B. D., Vidal, D., Hoekstra, A. G., Hoefsloot, H. C. J., Iedema, P., & Sloot, P. M. A. (1998). A comparison between lattice-boltzmann and finite element simulations of fluid flow in static mixer reactors. International Journal of Modern Physics C, 9(8), 1123-1128. https://doi.org/10.1142/S0129183198001035 [details]

Kandhai, D., Dubbeldam, D., Hoekstra, A. G., & Sloot, P. M. A. (1998). Parallel lattice-Boltzmann simulation of fluid flow in centrifugal elutration chambers. In P. Sloot, M. Bubak, & B. Hertzberger (Eds.), High-Performance Computing and Networking: International Conference and Exhibition, Amsterdam, The Netherlands, April 21-23, 1998 :proceedings (pp. 173-182). (Lecture Notes in Computer Science; Vol. 1401). Springer. https://doi.org/10.1007/bfb0037144 [details]

Sloot, P. M. A., Bubak, M. T., & Hertzberger, L. O. (1998). Proceedings high-performance computing and networking (HPCN Europe '98 Amsterdam). In Lecture notes in computer science Springer Verlag GmbH. [details]

Sloot, P. M. A., Pimentel, A. D., & Hertzberger, L. O. (1998). Design issues for high performance simulation. Simulation Practice and Theory, 6(3), 221-242. [details]

van Halderen, A. W., Overeinder, B. J., Sloot, P. M. A., van Dantzig, R., Epema, D. J. H., & Livny, M. (1998). Hierarchical resource management in the polder metacomputing initiative. Parallel Computing, 24(12/13), 1807-1825. [details]

1997

De Ronde, J. F., Van Albada, G. D., & Sloot, P. M. A. (1997). High performance simulation for resonant-mass gravitational radiation antennas. In B. Hertzberger, & P. Sloot (Eds.), High-Performance Computing and Networking - International Conference and Exhibition, Proceedings (pp. 200-212). (Lecture Notes in Computer Science; Vol. 1225). Springer Verlag. https://doi.org/10.1007/bfb0031593

Hoekstra, A. G., & Sloot, P. M. A. (1997). Elastic light scattering from single biological cells. In J. A. Kong (Ed.), Progress in Electromagnetics Research Symposium 1997 (pp. 583) [details]
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Hoekstra, A. G., Brinkhorst, P. J. H., & Sloot, P. M. A. (1997). First results of dda simulations of elastic light scattering by red blood cells. In J. W. Hovenier, K. Lumme, K. Muinonen, J. Rahola, & H. Laitinen (Eds.), Proceedings Workshop on Light Scattering by Non-Spherical Particles (SCANOP) (pp. 39-40) [details]

Kaandorp, J. A., & Sloot, P. M. A. (1997). A mesoscopic model for simulating the combined effect of hydrodynamics and diffusion on nutrient driven growth processes. In B. Monien, F. Karsch, & H. Satz (Eds.), Proceedings of the international conference Multi-scale Phenomena and their Simulation conference (pp. 250-254). World Scientific. [details]

Kaandorp, J. A., & Sloot, P. M. A. (1997). Parallel simulation of accretive growth in 3-dimensions. Biosystems, 44(3), 181-192. https://doi.org/10.1016/S0303-2647(97)00052-X [details]

Kandhai, B. D., Koponen, A., Hoekstra, A. G., Kataja, M., Timonen, J., & Sloot, P. M. A. (1997). Performance of a parallel 3d lattice boltzmann code for simulating fluid flow. In J. Timonen (Ed.), International Workshop on Physics of Structurally Disordered Materials [details]

Koponen, A., Kandhai, B. D., Hellen, E., Alava, M., Hoekstra, A. G., Kataja, M., Niskanen, K., Sloot, P. M. A., & Timonen, J. (1997). Permeability of three-dimensional random fibre webs. Physical Review Letters. [details]
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Koponen, A., Kataja, M., Timonen, J., Kandhai, B. D., Hoekstra, A. G., & Sloot, P. M. A. (1997). Fluid flow in three-dimensional random fibre webs. In CSC News, High Performance Computing and Networking in Finland (pp. 12-14) [details]

Overeinder, B. J., & Sloot, P. M. A. (1997). Breaking the Curse of Dynamics by Task Migration: Pilot Experiments in the Polder Metacomputer. Lecture Notes in Computer Science, 1332, 194-207. http://www.science.uva.nl/research/scs/papers/archive/Overeinder97_2.pdf [details]
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Schoneveld, A., de Ronde, J. F., & Sloot, P. M. A. (1997). On the complexity of task allocation. Complexity, 3, 52-60.

Schoneveld, A., de Ronde, J. F., & Sloot, P. M. A. (1997). On the complexity of task allocation. Complexity, 3, 52-60. [details]
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Schoneveld, A., de Ronde, J. F., & Sloot, P. M. A. (1997). Preserving locality for optimal parallelism in task allocation. In P. M. A. Sloot, & L. O. Hertzberger (Eds.), High-Performance Computing and Networking (pp. 565-574) [details]

Schoneveld, A., de Ronde, J. F., & Sloot, P. M. A. (1997). Task allocation by parallel evolutionary computing. Journal of Parallel and Distributed Computing, 47, 91-97. https://doi.org/10.1006/jpdc.1997.1398 [details]

Sloot, P. M. A., & Liddell, H. (1997). Guest editorial, high performance computing and networking europe 1996. In High performance computing and networking europe 1996 (Future Generation Computer Systems; No. volume 12). [details]

Voogd, J. M., Sloot, P. M. A., & van Dantzig, R. (1997). Symmetries of crystalline arrangements in spherical 2d lennard-jones systems. Bulletin of the American Physical Society, 1601. [details]

de Ronde, J. F., Schoneveld, A., & Sloot, P. M. A. (1997). Load Balancing by Redundant Decomposition and Mapping. Future Generation Computer Systems, 12(5), 391-407. https://doi.org/10.1016/S0167-739X(97)83341-9 [details]

de Ronde, J. F., van Albada, G. D., & Sloot, P. M. A. (1997). High performance simulation of gravitational radiation antennas. In P. M. A. Sloot, & L. O. Hertzberger (Eds.), High Performance Computing and Networking '97 (pp. 200-212). (Lecture Notes in Computer Science). Springer. [details]

de Ronde, J. F., van Albada, G. D., & Sloot, P. M. A. (1997). Simulation of gravitational wave detectors. Computers in Physics, 11(5), 484-497. https://doi.org/10.1063/1.168591 [details]
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1996

Doornbos, R. M. P., Schaeffer, M., Hoekstra, A. G., Sloot, P. M. A., de Grooth, B. G., & Greve, J. (1996). Elastic Light Scattering Measurements of Single Biological Cells in an Optical Trap. Applied Optics, 34, 729-734. https://doi.org/10.1364/AO.34.000729 [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1996). Parallel Hierarchical Methods for Large Scale Simulations of Virtual Particle Models. In P. M. A. Sloot, E. J. H. Kerckhoffs, J. F. M. Tonino, & A. M. Vossepoel (Eds.), ASCI 1996, Proceedings of the second annual conference of the Advanced School for Computing and Imaging (pp. 49-53) [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1996). The Discrete Dipole Approximation - Possibilities and Problems to Simulate Elastic Light Scattering. In M. Quinten, T. Wriedt, & K. Bauckhage (Eds.), Proceedings of the 1st Workshop on Electromagnetic and Light Scattering, Theory and Applications (pp. 7-18). University of Bremen. [details]
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Hoekstra, A. G., Grimminck, M. D., & Sloot, P. M. A. (1996). Simulating Light Scattering from micron-sized particles: A parallel Fast Discrete Dipole Approximation. In A. Colbrook, H. Lidell, L. O. Hertzberger, & P. M. A. Sloot (Eds.), Proceedings High Performance Computing and Networking Europe 1996 (pp. 269-275). (LNCS; No. 1067). [details]
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Hoekstra, A. G., Hertzberger, L. O., & Sloot, P. M. A. (1996). The Optical `Fingerprints' of Cells: Catching the Bad Guys. IEEE Computational Science and Engineering, Spring, 4-5. [details]
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Hoekstra, A. G., Sloot, P. M. A., van der Linden, F., van Muiswinkel, M., Vesseur, J. J. J., & Hertzberger, L. O. (1996). Native and Generic Parallel Programming Environments on a Transputer and a PowerPC Platform. Concurrency, 8, 19-46. [details]
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Kaandorp, J. A., & Sloot, P. M. A. (1996). Modelling and simulation of accretive growth and form on a parallel platform. In P. M. A. Sloot, E. J. H. Kerckhoffs, J. F. M. Tonino, & A. M. Vossepoel (Eds.), ASCI '96, Proceedings of the second annual conference of the Advanced School for Computing and Imaging (pp. 54-59). Delft: Advanced School for Computing and Imaging (ASCI). [details]

Kaandorp, J. A., & Sloot, P. M. A. (1996). Modelling diffusion and flow limited morphogenesis of marine sessile orginisms. In 3rd European conference of mathematics applied to biology and medicine Heidelberg.

Kaandorp, J. A., & Sloot, P. M. A. (1996). Modelling growth and form of marine sessile suspension feeders. In M. T. Michalewicz (Ed.), Advances in Computational Life Sciences Vol. 1 (pp. 129-132). Collingwood, Australia: CSIRO Publishing. [details]

Kaandorp, J. A., Lowe, C. P., Frenkel, D., & Sloot, P. M. A. (1996). The effect of nutrient diffusion and flow on coral morphology. Physical Review Letters, 77(11), 2328-2331. https://doi.org/10.1103/PhysRevLett.77.2328 [details]
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Kandhai, B. D., Sloot, P. M. A., & Huot, J. P. (1996). Constrained Migration: exploiting spatial locality. In E. J. H. Kerckhoffs, P. M. A. Sloot, J. F. M. Tonino, & A. M. Vossepoel (Eds.), ASCI 1996 Conference Proceedings (pp. 60-65). Lommel, Belgium: Advanced School for Computing and Imaging (ASCI). [details]

Kandhai, B. D., Sloot, P. M. A., & Huot, J. P. (1996). Constrained migration of an atmospheric circulation model. In A. Colbrook, H. Liddel, & P. M. A. Sloot (Eds.), High-performance computing and networking (pp. 269-275). Brussels-Belgium: Springer-Verlag. [details]

Overeinder, B. J., Sloot, P. M. A., Heederik, R. N., & Hertzberger, L. O. (1996). A Dynamic Load Balancing System for Parallel Cluster Computing. Future Generation Computer Systems, 12(1), 101-115. https://doi.org/10.1016/0167-739X(95)00038-T [details]
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Schoneveld, A., de Ronde, J. F., Sloot, P. M. A., & Kaandorp, J. A. (1996). A Parallel Cellular Genetic Algorithm Used in Finite Element Simulation. In H-P. Schwefel, H-M. Voigt, I. Rechenberg, & W. Ebeling (Eds.), Parallel Problem Solving from Nature IV (pp. 533-542). (LNCS; No. 1141). [details]

Sloot, P. M. A., & Kaandorp, J. A. (1996). Particle modelling environment for dynamic complex system simulation. In S. van der Kolk, R. van Grondelle, O. J. G. Somsen, H. V. Westerhoff, & J. E. Wijker (Eds.), Biocomplexity and the essence of the living state (pp. 83-85). Amsterdam: Free University. [details]

Sloot, P. M. A., Frenkel, D., Kaandorp, J. A., & van Driel, R. (1996). Modelling and simulation of reactivity, diffusion, and flow in biological systems using the lattice Boltzmann method. In S. van der Kolk, R. van Grondelle, O. J. G. Somsen, H. V. Westerhoff, & J. E. Wijker (Eds.), Biocomplexity and the essence of the living state (pp. 80-82). Amsterdam: Free University. [details]

de Ronde, J. F., Schoneveld, A., & Sloot, P. M. A. (1996). A Genetic Algorithm Based Tool for the Mapping Problem. In E. J. H. Kerckhoffs, J. F. M. Tonino, P. M. A. Sloot, & A. M. Vossepoel (Eds.), Proceedings of the second Annual Conference of the Advanced School for Computing and Imaging (pp. 174-179) [details]

de Ronde, J. F., Schoneveld, A., Floros, N., Reeve, J. F., & Sloot, P. M. A. (1996). Loadbalancing by redundant decomposition and mapping. In H. Liddell, A. Colbrook, L. O. Hertzberger, & P. M. A. Sloot (Eds.), High-Performance Computing and Networking (HPCN Europe '96), Brussels, Belgium (Vol. 1067, pp. 555-561)

de Ronde, J. F., Schoneveld, A., Sloot, P. M. A., Floros, N., & Reeve, J. (1996). Load Balancing by Redundant Decomposition and Mapping. In A. Colbrook, H. Liddell, L. O. Hertzberger, & P. M. A. Sloot (Eds.), High Performance Computing and Networking (pp. 555-561). (LNCS; No. 1067). [details]

1995

Hoekstra, A. G., & Sloot, P. M. A. (1995). Coupled Dipole Simulations of Elastic Light Scattering on Parallel Systems. International Journal of Modern Physics C, 6, 663-679. https://doi.org/10.1142/S0129183195000563 [details]

Hoekstra, A. G., & Sloot, P. M. A. (1995). Development of Parallel Hierarchical Methods. In PowerXplorer User Report, 1st edition (pp. 70-76)

Hoekstra, A. G., & Sloot, P. M. A. (1995). Simulating Elastic Light Scattering. In PowerXplorer User Report, 1st edition (pp. 65-69)

Hoekstra, A. G., Sloot, P. M. A., & Hertzberger, L. O. (1995). Comparing the Parix and PVM parallel programming enviroments. In Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings (pp. 13-17). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Hoekstra1995b.pdf

Overeinder, B. J., & Sloot, P. M. A. (1995). Parallel Discrete Event Simulation Performance Modelling and Evaluation. PowerXplorer User Report, 1st edition, 137-144. http://www.science.uva.nl/research/scs/papers/archive/Overeinder95_3.pdf

Pimentel, A. D., Hertzberger, L. O., & Sloot, P. M. A. (1995). Mermaid: Modelling and Evaluation Research in MIMD Architecture Design. In PowerXplorer User Report, 1st edition (pp. 145-151) http://www.science.uva.nl/research/scs/papers/archive/Pimentel95_5.pdf

Pimentel, A. D., van Brummen, J., Papathanassiadis, T., Sloot, P. M. A., & Hertzberger, L. O. (1995). Mermaid: modelling and evaluation research in MIMD architecture design. In Lecture Notes in Computer Science 919, High Performance Computing and Networking (pp. 335-340). Springer-Verlag. http://www.science.uva.nl/research/scs/papers/archive/Pimentel95_4.pdf

Schoneveld, A., Kaandorp, J. A., & Sloot, P. M. A. (1995). Parallel Dynamical Complex Systems. In PowerXplorer User Report, 1st edition (pp. 152-156)

Sloot, P. M. A. (1995). High Performance Simulation. EUROSIM - Simulation News Europe, 1, 15-18. [details]

Sloot, P. M. A. (1995). Modelling for Parallel Simulation: Possibilities and Pitfalls. In I. Husinsky, & F. Breitenecker (Eds.), Proceedings of the 1995 EUROSIM Conference, EUROSIM'95 (pp. 29-43). Elsevier. http://www.science.uva.nl/research/scs/papers/archive/Sloot1995e.pdf [details]

Voogd, J. M., & Sloot, P. M. A. (1995). Simulated Annealing: Comparisons of Vector and Parallel Implementations. In ASCI 1995 Conference Proceedings (pp. 213-222). Advanced School for Computing and Imaging (ASCI).

Voogd, J. M., Sloot, P. M. A., & v. Dantzig, R. (1995). Comparison of vector and parallel implementations of the simulated annealing algorithm. Future Generation Computer Systems, 11(4-5), 467-475. https://doi.org/10.1016/0167-739X(95)00016-L [details]

1994

Hoekstra, A. G., Doornbos, R. M. P., Deurloo, K. E. I., Noordmans, H. J., de Grooth, B. G., & Sloot, P. M. A. (1994). Another face of Lorenz-Mie scattering: monodisperse distributions of spheres produce Lissajous-like patterns. Applied Optics, 33(3), 494-500. https://doi.org/10.1364/AO.33.000494 [details]
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1993

Doornbos, R. M. P., Hoekstra, A. G., Deurloo, K. E. I., de Grooth, B. G., Sloot, P. M. A., & Greve, J. (1993). Polarization measurements in a Flow Cytometer; Lissajous Pattererns in scatter plots of calibrations beads. Cytometry, Supplement. http://www.science.uva.nl/research/scs/papers/archive/Hoekstra1993g.pdf

Hoekstra, A. G., & Sloot, P. M. A. (1993). Dipolar Unit Size in Coupled Dipole Calculations of the Scattering Matrix Elements Elements. Optics Letters, 18, 1211-1213. https://doi.org/10.1364/OL.18.001211

Hoekstra, A. G., & Sloot, P. M. A. (1993). Implementation of a Parallel Conjugate Gradient Method for Simulation of Elastic Light. In R. A. de Groot, & E. J. Nadrachal (Eds.), The 4th international conference Physics Computing '92 (pp. 345-346). World Scientific Singapore. http://www.science.uva.nl/research/scs/papers/archive/Hoekstra1993d.pdf

Hoekstra, A. G., & Sloot, P. M. A. (1993). New computational techniques to simulate Light Scattering from arbitrary particles. In M. Maeda (Ed.), The 3rd International Congress on Optical Particle Sizing '93 (pp. 167-172). http://www.science.uva.nl/research/scs/papers/archive/Hoekstra93_3.pdf

Hoekstra, A. G., & Sloot, P. M. A. (1993). Simulating Elastic Light Scattering using High Performance Computing methods. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European Simulation Symposium 1993 (pp. 462-467). Simulation Councils Inc., San Diego. http://www.science.uva.nl/research/scs/papers/archive/Hoekstra93_5.pdf

Hoekstra, A. G., Doornbos, R. M. P., Deurloo, K. E. I., Noordmans, H. J., de Grooth, B. G., & Sloot, P. M. A. (1993). An unexpected signature of Lorenz-Mie scattering observed in flowcytometric experiments. In M. Maeda (Ed.), Proceedings of the 3rd International Congress on Optical Particle Sizing '93: Yokohama, Japan, August 23-26 1993 (pp. 153-158) http://www.science.uva.nl/research/scs/papers/archive/Hoekstra93_2.pdf [details]
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Lonsdale, G., Clinckemaillie, J., Vlachoutsis, S., de Ronde, J. F., Sloot, P. M. A., Floros, N., & Reeve, J. F. (1993). Crashworthiness simulation migration to distributed memory and MIMD machines. In The 26th International Symposium on Automotive Technology and Automation (pp. 237-244). Croydon, England.

Overeinder, B. J., & Sloot, P. M. A. (1993). Application of Time Warp to Parallel simulations with asynchronous cellular automata. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European Simulation Symposium 1993 (pp. 397-402). http://www.science.uva.nl/research/scs/papers/archive/Overeinder93_1.pdf

Sloot, P. M. A., & Hoekstra, A. G. (1993). Light Scattering simulations on a massively parallel computer at the IC3A. Transputer Applications, 1, 42-49. http://www.science.uva.nl/research/scs/papers/archive/Sloot93_3.pdf

Sloot, P. M. A., ter Laak, A., Pandolfi, P., van Dantzig, R., & Frenkel, D. (1993). Crystallization on a Sphere. In R. A. de Groot, & E. J. Nadrachal (Eds.), The 4th international conference Physics Computing '92 (pp. 471-472). World Scientific Singapore. http://www.science.uva.nl/research/scs/papers/archive/Sloot93_4.pdf

Voogd, J. M., & Sloot, P. M. A. (1993). Simulated annealing on H.P.C. systems: Applied to crystallization with spherical boundary conditions. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European Simulation Symposium 1993 (pp. 371-376). http://www.science.uva.nl/research/scs/papers/archive/Voogd93_1.pdf

de Ronde, J. F., Sloot, P. M. A., Beemster, M., & Hertzberger, L. O. (1993). A simulation methodology for the prediction of SPMD programs performance. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European Simulation Symposium 1993 (pp. 24-25). http://www.science.uva.nl/research/scs/papers/archive/Ronde93_7.pdf

1992

Belleman, R. G., Sloot, P. M. A., & Hertzberger, L. O. (1992). Multivariate data processing system: transputer based data acquisition, analysis and presentation. In M. Valero (Ed.), Parallel Computing and Transputer Applications (PACTA 92) (pp. 1147-1155). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Belleman92_1.pdf [details]
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Graaff, R., Aarnoudse, J. G., Zijp, J. R., Sloot, P. M. A., de Mul, F. F. M., Greve, J., & Koelink, M. H. (1992). Reduced light-scattering properties for mixtures off spherical particles: a simple approximation derived from Mie calculations. Applied Optics, 31(10), 1370-1376. https://doi.org/10.1364/AO.31.001370 [details]
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Overeinder, B. J., Sloot, P. M. A., & Hertzberger, L. O. (1992). Time Warp on a Transputer Platform: Pilot Study with Asynchronous Cellular Automata. In M. Valero, E. Onate, M. Jane, J. L. Larriba, & B. Suarez (Eds.), Parallel Computing and Transputer Applications (PACTA 92) (pp. 1303-1312). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Overeinder92_1.pdf

Sloot, P. M. A. (1992). De Computer Oorlog. In PC+ (pp. 20-1)

Sloot, P. M. A. (1992). Multiprocessing zorgt voor teamwork. In PC+ (pp. 22-24). (8).

Sloot, P. M. A., & Hoekstra, A. G. (1992). Implementation of a parallel conjugate gradient method for simulation of elastic light scattering. Computers in Physics, 6, 323-323. http://www.science.uva.nl/research/scs/papers/archive/Sloot92_1.pdf

Sloot, P. M. A., ter Laak, A., Pandolfi, P., & van Dantzig, R. (1992). Crystallization on a Sphere: Parallel Simulation on a Transputer Network. Computers in Physics, 6, 307-308.

ter Laak, A., Hertzberger, L. O., & Sloot, P. M. A. (1992). Nonconvex continuous optimization experiments on a transputer system. In A. Allen (Ed.), Transputer systems ongoing research (Vol. 25, pp. 251-265). IOS Press. http://books.google.nl/books?id=zroYqxO9o3IC&printsec=frontcover&dq=WoTUG+15&sig=0HfyWF2StlxqcVm1jZ-M9gdD0hUPPP1,M1

van Muiswinkel, M., Trip, L. H., & Sloot, P. M. A. (1992). Parallel Sound Synthesis: Parallel Sonification of Multivariate data on a transputer platform. In Parallel Computing and Transputer Applications (PACTA 92) (pp. 1156-1164). IOS Press. http://www.science.uva.nl/research/scs/papers/archive/Muiswinkel1992a.pdf

1991

Hoekstra, A. G., Aten, J., & Sloot, P. M. A. (1991). The effect of aniosmotic media on the volume of the T-lymphocyte nucleus. Biophysical Journal, 59, 765-774. https://doi.org/10.1016/S0006-3495(91)82289-5

Hoekstra, A. G., Hertzberger, L. O., & Sloot, P. M. A. (1991). Simulation of Elastic Light Scattering on distributed memory machines. Bulletin of the American Physical Society, 36, 1798-1798. http://www.science.uva.nl/research/scs/papers/archive/Hoekstra91_2.pdf

Hoekstra, A. G., Sloot, P. M. A., Haan, M. J., & Hertzberger, L. O. (1991). Time complexity analysis for distributed memory computers: Implementation of a parallel Conjugate Gradient method. In J. van Leeuwen (Ed.), Computing Science in the Netherlands (pp. 249-266). http://www.science.uva.nl/research/scs/papers/archive/Hoekstra91_3.pdf

Overeinder, B. J., Hertzberger, L. O., & Sloot, P. M. A. (1991). Parallel Discrete Event Simulation. In W. J. Withagen (Ed.), The Third Workshop Computersystems (pp. 19-30). http://www.science.uva.nl/research/scs/papers/archive/Overeinder91_1.pdf

Sloot, P. M. A. (1991). Wegwijs in Wiskunde. In PC+ (pp. 36). (22).

1990

Sloot, P. M. A., & Hoekstra, A. G. (1990). Morphological characteristics of nucleated bloodcells studied by elastic light scattering. In E. D. Hirleman (Ed.), The 2nd international congress on particle sizing (pp. 382-394). http://www.science.uva.nl/research/scs/papers/archive/Sloot1990b.pdf

Sloot, P. M. A., Hoekstra, A. G., van der Liet, H., & Figdor, C. G. (1990). Arbitrarily-shaped particles measured in flow-through systems. In E. D. Hirleman (Ed.), Proceedings of the 2nd International Congress on Optical Particle Sizing: Mechanical and Aerospace Engineering, Arizona State University, Tempe, Arizona, March 5-8, 1990 (pp. 605-611). Arizona State University. http://www.science.uva.nl/research/scs/papers/archive/Sloot1990a.pdf [details]
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1989

Sloot, P. M. A., & Figdor, C. G. (1989). Ternary representation of trivariate data. Cytometry, 10(1), 77-80. https://doi.org/10.1002/cyto.990100113 [details]
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Sloot, P. M. A., Carels, M. J., & Hoekstra, A. G. (1989). CACE: a case of Embedded System Development. In P. M. G. Apers, & J. van Leeuwen (Eds.), Computing Science in the Netherlands (pp. 441-462). Amsterdam, The Netherlands.

Sloot, P. M. A., Hoekstra, A. G., van de Liet, H., & Figdor, C. G. (1989). Scatter matrix elements of biological particles measured in a flow-through system: Theory and practice. Applied Optics, 28, 1752-1762. http://www.science.uva.nl/research/scs/papers/archive/Sloot1989a.pdf

1988

Sloot, P. M. A., Hoekstra, A. G., & Figdor, C. G. (1988). Osmotic response of lymphocytes measured by means of forward lightscattering: theoretical considerations. Cytometry, 9(6), 636-641. https://doi.org/10.1002/cyto.990090620 [details]
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Sloot, P. M. A., van der Donk, E. H. M., & Figdor, C. G. (1988). Computer Assisted Centrifugal Elutriation. II: Multiparametric statistical analysis. Computer Methods and Programs in Biomedicine, 27(1), 37-46. https://doi.org/10.1016/0169-2607(88)90101-0 [details]
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1987

Sloot, P. M. A., Carels, M. J., Tensen, P., & Figdor, C. G. (1987). Computer Assisted Centrifugal Elutriation. I: Detection system and data acquisition equipment. Computer Methods and Programs in Biomedicine, 24(3), 179-188. https://doi.org/10.1016/0169-2607(87)90030-7 [details]
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Sloot, P. M. A., Tensen, P., & Figdor, C. G. (1987). Spectral analysis of flow cytometric data: design of a special purpose low-pass digital filter. Cytometry, 8(6), 545-551. https://doi.org/10.1002/cyto.990080603 [details]
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1986

Sloot, P. M. A., & Figdor, C. G. (1986). Elastic light scattering from nucleated bloodcells: Rapid numerical analysis. Applied Optics, 25, 3559. https://doi.org/10.1364/AO.25.003559
2025

Quax, R., Sloot, P. M. A., & Gu, M. (2025). Natural Information Processing. In Foundational Papers in Complexity Science (Vol. 4, pp. 2447) https://doi.org/10.37911/9781947864559.78

2024

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14832). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14833). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14834). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14835). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14836 ). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14837). Springer.

Franco, L., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2024). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14838). Springer.

2023

Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2023). Preface. In 24th International Conference on Computational Science, ICCS 2024 (pp. v-vi). (Lecture Notes in Computer Science; Vol. 14077). Springer.

Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2023). Preface. In J. Mikyška, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2023: 23rd International Conference, Prague, Czech Republic, July 3–5, 2023 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 14073). Springer. https://doi.org/10.1007/978-3-031-35995-8 [details]

Mikyška, J., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2023). Preface. In J. Mikyška, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2023: 23rd International Conference, Prague, Czech Republic, July 3–5, 2023 : proceedings (Vol. II, pp. v-vi). (Lecture Notes in Computer Science; Vol. 14074). Springer. https://doi.org/10.1007/978-3-031-36021-3 [details]

2022

Groen, D., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2022). Preface. In D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2022: 22nd International Conference, London, UK, June 21–23, 2022 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 13350). Springer. https://doi.org/10.1007/978-3-031-08751-6 [details]

Groen, D., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2022). Preface. In D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2022: 22nd International Conference, London, UK, June 21–23, 2022 : proceedings (Vol. II, pp. v-vi). (Lecture Notes in Computer Science; Vol. 13351). Springer. https://doi.org/10.1007/978-3-031-08754-7 [details]

Groen, D., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2022). Preface. In D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2022: 22nd International Conference, London, UK, June 21–23, 2022 : proceedings (Vol. III, pp. v-vi). (Lecture Notes in Computer Science; Vol. 13352). Springer. https://doi.org/10.1007/978-3-031-08757-8 [details]
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Groen, D., de Mulatier, C., Paszynski, M., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2022). Preface. In D. Groen, C. de Mulatier, M. Paszynski, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2022: 22nd International Conference, London, UK, June 21–23, 2022 : proceedings (Vol. IV, pp. v-vi). (Lecture Notes in Computer Science; Vol. 13353). Springer. https://doi.org/10.1007/978-3-031-08760-8 [details]

Huth, K. B. S., Finnemann, A., van den Ende, M. W. J., & Sloot, P. M. A. (2022). No robust relation between larger cities and depression. Proceedings of the National Academy of Sciences of the United States of America, 119(2), Article e2118943118. Advance online publication. https://doi.org/10.1073/pnas.2118943118 [details]
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2021

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. III, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12744). Springer. https://doi.org/10.1007/978-3-030-77967-2 [details]

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12742). Springer. https://doi.org/10.1007/978-3-030-77961-0 [details]

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. II, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12743). Springer. https://doi.org/10.1007/978-3-030-77964-1 [details]

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. IV, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12745). Springer. https://doi.org/10.1007/978-3-030-77970-2 [details]

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. V, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12746). Springer. https://doi.org/10.1007/978-3-030-77977-1 [details]

Paszynski, M., Kranzlmüller, D., Krzhizhanovskaya, V. V., Dongarra, J. J., & Sloot, P. M. A. (2021). Preface. In M. Paszynski, D. Kranzlmüller, V. V. Krzhizhanovskaya, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2021: 21st International Conference, Krakow, Poland, June 16–18, 2021 : proceedings (Vol. VI, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12747). Springer. https://doi.org/10.1007/978-3-030-77980-1 [details]

2020

Huang, Z., Tan, E., Lum, E., Sloot, P., Boehm, B. O., & Car, J. (2020). Correction: A Smartphone App to Improve Medication Adherence in Patients With Type 2 Diabetes in Asia: Feasibility Randomized Controlled Trial. JMIR mHealth and uHealth, 8(4), Article e18411. https://doi.org/10.2196/18411

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12137). Springer. https://doi.org/10.1007/978-3-030-50371-0 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. II, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12138). Springer. https://doi.org/10.1007/978-3-030-50417-5 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. III, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12139). Springer. https://doi.org/10.1007/978-3-030-50420-5 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. IV, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12140). Springer. https://doi.org/10.1007/978-3-030-50423-6 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. V, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12141). Springer. https://doi.org/10.1007/978-3-030-50426-7 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. VI, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12142). Springer. https://doi.org/10.1007/978-3-030-50433-5 [details]

Krzhizhanovskaya, V. V., Závodszky, G., Lees, M., Dongarra, J., Sloot, P. M. A., Brissos, S., & Teixeira, J. (2020). Preface: Twenty Years of Computational Science. In V. V. Krzhizhanovskaya, G. Závodszky, M. H. Lees, J. J. Dongarra, P. M. A. Sloot, S. Brissos, & J. Teixeira (Eds.), Computational Science – ICCS 2020: 20th International Conference, Amsterdam, The Netherlands, June 3–5, 2020 : proceedings (Vol. VII, pp. v-vi). (Lecture Notes in Computer Science; Vol. 12143). Springer. https://doi.org/10.1007/978-3-030-50436-6 [details]

2019

Rodrigues, J. M. F., Cardoso, P. J. S., Monteiro, J., Lam, R., Krzhizhanovskaya, V. V., Lees, M., Dongarra, J. J., & Sloot, P. M. A. (2019). Preface. In J. M. F. Rodrigues, P. J. S. Cardoso, J. Monteiro, R. Lam, V. V. Krzhizhanovskaya, M. H. Lees, J. J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2019: 19th International Conference, Faro, Portugal, June 12–14, 2019 : proceedings (Vol. I, pp. v-vi). (Lecture Notes in Computer Science; Vol. 11536). Springer. https://doi.org/10.1007/978-3-030-22734-0 [details]

2018

Shi, Y., Fu, H., Tian, Y., Krzhizhanovskaya, V. V., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2018). Preface. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : Proceedings, Part II (Vol. 2, pp. V-VI). (Lecture Notes in Computer Science; Vol. 10861). Springer. https://doi.org/10.1007/978-3-319-93701-4 [details]

Shi, Y., Fu, H., Tian, Y., Krzhizhanovskaya, V. V., Lees, M. H., Dongarra, J., & Sloot, P. M. A. (2018). Preface. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : proceedings (Vol. 1, pp. V-VI). (Lecture Notes in Computer Science; Vol. 10860). Springer. https://doi.org/10.1007/978-3-319-93698-7 [details]

Shi, Y., Fu, H., Tian, Y., Krzhizhanovskaya, V. V., Lees, M., Dongarra, J., & Sloot, P. M. A. (2018). Preface. In Y. Shi, H. Fu, Y. Tian, V. V. Krzhizhanovskaya, M. H. Lees, J. Dongarra, & P. M. A. Sloot (Eds.), Computational Science – ICCS 2018: 18th International Conference, Wuxi, China, June 11–13, 2018 : proceedings (Vol. 3, pp. V-VI). (Lecture Notes in Computer Science; Vol. 10862). Springer. https://doi.org/10.1007/978-3-319-93713-7 [details]

2017

Koumoutsakos, P., Lees, M., Krzhizhanovskaya, V., Dongarra, J., & Sloot, P. (Eds.) (2017). International Conference on Computational Science, ICCS 2017: 12-14 June 2017, Zurich, Switzerland. (Procedia Computer Science; Vol. 108). Elsevier. http://www.sciencedirect.com/science/journal/18770509/108/ [details]

Viswanathan, V., Lees, M., & Sloot, P. M. A. (2017). Erratum to: The influence of memory on indoor environment exploration: A numerical study (Behav Res, 10.3758/s13428-015-0604-1). Behavior Research Methods, 49(4), 1569. https://doi.org/10.3758/s13428-016-0781-6

2016

Altintas, I., Norman, M., Dongarra, J., Krzhizhanovskaya, V. V., Lees, M., & Sloot, P. M. A. (Eds.) (2016). International Conference on Computational Science 2016, ICCS 2016: 6-8 June 2016, San Diego, California, USA. (Procedia Computer Science; Vol. 80). Elsevier. http://www.sciencedirect.com/science/journal/18770509/80 [details]

2015

Koziel, S., Leifsson, L., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2015). International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature. (Procedia Computer Science; No. 51). Elsevier. http://www.sciencedirect.com/science/journal/18770509/51/ [details]

2014

Abramson, D., Lees, M., Krzhizhanovskaya, V. V., Dongarra, J., & Sloot, P. M. A. (2014). Big Data Meets Computational Science: preface for ICCS 2014. Procedia Computer Science, 29, 1-7. https://doi.org/10.1016/j.procs.2014.04.002 [details]
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Abramson, D., Lees, M., Krzhizhanovskaya, V., Dongarra, J., & Sloot, P. M. A. (2014). 2014 International Conference on Computational Science. (Procedia Computer Science; No. 29). Elsevier. http://www.sciencedirect.com/science/journal/18770509/29 [details]

Melnikova, N. B., Jordan, D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2014). Slope Instability of the Earthen Levee in Boston, UK: Numerical Simulation and Sensor Data Analysis. ArXiv. http://arxiv.org/abs/1401.7631 [details]

2013

Alexandrov, V., Lees, M., Krzhizhanovskaya, V., Dongarra, J., & Sloot, P. M. A. (Eds.) (2013). International Conference on Computational Science, ICCS 2013: Barcelona, Spain, June 5- June 7, 2013. (Procedia Computer Science; Vol. 18). Elsevier. http://www.sciencedirect.com/science/journal/18770509/18 [details]

Sloot, P. M. A., Kampis, G., & Gulyás, L. (2013). Advances in dynamic temporal networks: understanding the temporal dynamics of complex adaptive networks. The European Physical Journal - Special Topics, 222(6), 1287-1293. https://doi.org/10.1140/epjst/e2013-01926-8 [details]
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2012

Ali, H., Shi, Y., Khazanchi, D., Lees, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (2012). Proceedings of the International Conference on Computational Science, ICCS 2012. (Procedia Computer Science; No. 9). Elsevier. http://www.sciencedirect.com/science/journal/18770509/9 [details]

Ali, H., Shi, Y., Khazanchi, D., Lees, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (2012). Empowering Science through Computing, preface for ICCS 2012. Procedia Computer Science, 9, 1-6. https://doi.org/10.1016/j.procs.2012.04.001 [details]
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Sloot, P. M. A., & Quax, R. (2012). Information processing as a paradigm to model and simulate complex systems. Journal of Computational Science, 3(5), 247-249. https://doi.org/10.1016/j.jocs.2012.07.001 [details]

2011

Bui, Q. C., & Sloot, P. M. A. (2011). Extracting biological events from text using simple syntactic patterns. In Proceedings of BioNLP Shared Task 2011 Workshop: Portland, Oregon, USA, 24 June, 2011 (pp. 143-146). Association for Computational Linguistics. http://www.aclweb.org/anthology-new/W/W11/W11-1820.pdf [details]
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Sato, M., Matsuoka, S., Sloot, P. M. A., van Albada, G. D., & Dongarra, J. (2011). Proceedings of the International Conference on Computational Science, ICCS 2011. (Procedia Computer Science; No. 4). Elsevier. http://www.sciencedirect.com/science/journal/18770509/4/supp/C [details]

2010

Bellavista, P., Chang, R-S., Chao, H-C., Lin, S-F., & Sloot, P. M. A. (2010). Advances in Grid and Pervasive Computing: 5th International Conference, GPC 2010, Hualien, Taiwan, May 10-13, 2010: Proceedings. (Lecture Notes in Computer Science; No. 6104). Springer. https://doi.org/10.1007/978-3-642-13067-0 [details]

Hoekstra, A. G., Kroc, J., & Sloot, P. M. A. (2010). Introduction to modeling of complex systems using cellular automata. In A. G. Hoekstra, J. Kroc, & P. M. A. Sloot (Eds.), Simulating complex systems by cellular automata (pp. 1-16). (Understanding complex systems). Springer. https://doi.org/10.1007/978-3-642-12203-3_1 [details]

Hoekstra, A. G., Kroc, J., & Sloot, P. M. A. (2010). Preface. In A. G. Hoekstra, J. Kroc, & P. M. A. Sloot (Eds.), Simulating Complex Systems by Cellular Automata (pp. xi-xiii). (Understanding Complex Systems). Springer. https://doi.org/10.1007/978-3-642-12203-3 [details]

Hoekstra, A. G., Kroc, J., & Sloot, P. M. A. (Eds.) (2010). Simulating complex systems by cellular automata. (Understanding complex systems). Springer. https://doi.org/10.1007/978-3-642-12203-3 [details]

Sloot, P. M. A., van Albada, G. D., & Dongarra, J. (2010). International Conference on Computational Science, ICCS 2010. (Procedia Computer Science; No. 1(1)). Elsevier. http://www.sciencedirect.com/science/journal/18770509/1/1 [details]

2009

Allen, G., Nabrzyski, J., Seidel, E., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2009). Computational Science – ICCS 2009: 9th International Conference Baton Rouge, LA, USA, May 25-27, 2009 : proceedings. (Lecture Notes in Computer Science; Vol. 5544-5545). Springer. https://doi.org/10.1007/978-3-642-01970-8, https://doi.org/10.1007/978-3-642-01973-9 [details]

2008

Bubak, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2008). Computational Science – ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008 : proceedings. (Lecture Notes in Computer Science; Vol. 5101). Springer. https://doi.org/10.1007/978-3-540-69384-0 [details]

Bubak, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2008). Computational Science – ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008 : proceedings. (Lecture Notes in Computer Science; Vol. 5102). Springer. https://doi.org/10.1007/978-3-540-69387-1 [details]

Bubak, M., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2008). Computational Science – ICCS 2008: 8th International Conference, Kraków, Poland, June 23-25, 2008 : proceedings. (Lecture Notes in Computer Science; Vol. 5103). Springer. https://doi.org/10.1007/978-3-540-69389-5 [details]

Ertaylan, G., & Sloot, P. M. A. (2008). A complex automata model of HIV-1 co-receptor tropism: Mutation rate prediction. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings (pp. 85). Academic Computer Centre CYFRONET AGH. [details]

Sloot, P. M. A., Tirado-Ramos, A., Ertaylan, G., O Nuallain, B., van de Vijver, D., Boucher, C. A., & Bubak, M. (2008). VIROLAB: A distributed decision support system for viral disease treatment. In M. Bubak, M. Turała, & K. Wiatr (Eds.), Cracow'07 Grid Workshop: October 15-17, 2007 Cracow, Poland: proceedings (pp. 33-34). Academic Computer Centre CYFRONET AGH. [details]

2007

Dubizky, W., Schuster, A., Sloot, P. M. A., Schroeder, M., & Romberg, M. (2007). Distributed, High-Performance and Grid Computing in Computational Biology. (Lecture Notes in Computer Science; No. 4360). Springer. http://www.springer.com/3-540-69841-8 [details]

Shi, Y., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2007). Computational Science – ICCS 2007: 7th International Conference, Beijing, China, May 27 - 30, 2007 : proceedings. (Lecture Notes in Computer Science; Vol. 4487). Springer. https://doi.org/10.1007/978-3-540-72584-8 [details]

Shi, Y., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2007). Computational Science – ICCS 2007: 7th International Conference, Beijing, China, May 27 - 30, 2007 : proceedings. (Lecture Notes in Computer Science; Vol. 4488). Springer. https://doi.org/10.1007/978-3-540-72586-2 [details]

Shi, Y., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2007). Computational Science – ICCS 2007: 7th International Conference, Beijing, China, May 27 - 30, 2007 : proceedings. (Lecture Notes in Computer Science; Vol. 4489). Springer. https://doi.org/10.1007/978-3-540-72588-6 [details]

Shi, Y., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (Eds.) (2007). Computational Science – ICCS 2007: 7th International Conference, Beijing, China, May 27 - 30, 2007 : proceedings. (Lecture Notes in Computer Science; Vol. 4490). Springer. https://doi.org/10.1007/978-3-540-72590-9 [details]

Sloot, P. M. A. (2007). International Conference on Computational Science series. Amsterdam: Elsevier.

Sloot, P. M. A., Frenkel, D., van der Vorst, H. A., van Kampen, A., Bal, H., Klint, P., Mattheij, R. M. M., van Wijk, J., Schaye, J., Langevelde, H-J., Bisseling, R. H., Smit, B., Valenteyn, E., Sips, H., Roerdink, J. B. T. M., & Langedoen, K. G. (2007). Computational e-Science: Studying complex systems in silico: A National Coordinated Initiative : 'White Paper'. Unknown Publisher. http://www.science.uva.nl/research/scs/papers/archive/Sloot2006d.pdf [details]
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2006

Alexandrov, V. N., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2006). Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part I. (Lecture Notes in Computer Science; No. 3991). Springer. http://www.springer.com/uk/home/computer/foundations?SGWID=3-156-22-173660148-0 [details]

Alexandrov, V. N., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2006). Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part II. (Lecture Notes in Computer Science; No. 3992). Springer. http://www.springer.com/uk/home/computer/foundations?SGWID=3-156-22-173660149-0 [details]

Alexandrov, V. N., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2006). Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part III. (Lecture Notes in Computer Science; No. 3993). Springer. http://www.springer.com/uk/home/computer/foundations?SGWID=3-156-22-173660150-0 [details]

Alexandrov, V. N., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2006). Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part III. (Lecture Notes in Computer Science; No. 3994). Springer. http://www.springer.com/uk/home/computer/foundations?SGWID=3-156-22-173660151-0 [details]

Lee, G., Slezak, D., Kim, T. H., Sloot, P. M. A., Kim, H-K., Ko, I. S., & Szczuka, M. (2006). IEEE Proceedings of the 2006 International Conference on Hybrid Information Technology. IEEE. [details]

Sloot, P. M. A. (2006). eScience 2006, Amsterdam, Proceedings published by IEEE. Amsterdam: IEEE.

Sloot, P. M. A. (2006). A report on the Virolab project in the bi-monthly journal: NIP News September. NIP news, 2.

Sloot, P. M. A., van Albada, G. D., Bubak, M. T., & Trefethen, A. (2006). 2nd IEEE International Conference on e-Science and Grid Computing. IEEE. http://doi.ieeecomputersociety.org/10.1109/E-SCIENCE.2006.125 [details]

2005

Belleman, R. G., Sloot, P. M. A., Zudilova-Seinstra, E. V., & Osseyran, A. (2005). Simulation, visualisation, interaction and mixed reality: views of the University of Amsterdam and SARA. In EU workshop on simulation, Visualisation, Interaction and Mixed Reality [details]

Sloot, P. (2005). International Journal on Grid Computing, theory, methods and applications. Amsterdam: Elsevier.

Sloot, P. M. A., Hoekstra, A. G., Priol, T., Reinefeld, A., & Bubak, M. T. (2005). Advances in Grid Computing - EGC 2005. (Lecture Notes in Computer Science; No. 3470). Springer. [details]

Sunderam, V. S., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2005). Proc. 5th ICCS, Part I. (Lecture Notes in Computer Science; No. 3514). Springer. [details]

Sunderam, V. S., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2005). Proc. 5th ICCS, Part II. (Lecture Notes in Computer Science; No. 3515). Springer. [details]

Sunderam, V. S., van Albada, G. D., Sloot, P. M. A., & Dongarra, J. J. (2005). Proc. 5th ICCS, Part III. (Lecture Notes in Computer Science; No. 3516). Springer. [details]

2004

Krzhizhanovskaya, V. V., Gorbachev, Y. E., & Sloot, P. M. A. (2004). A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition. In Book of abstracts of the International conference "Distributed Computing and Grid Technologies in Science and Education" (pp. 89-90). Dubna, Russia: JINR. [details]

Sloot, P. M. A., Chopard, B., & Hoekstra, A. G. (2004). Cellular Automata, Proccedings ACRI2004. (Lecture Notes in Computer Science; No. 3305). Springer. [details]

Zajac, K., Bubak, M., Malawski, M., & Sloot, P. M. A. (2004). Execution and migration management of HLA-based interactive simulations in the grid. Lecture Notes in Computer Science, 872-879. [details]

2003

Artoli, A. M. M., Hoekstra, A. G., & Sloot, P. M. A. (2003). Simulation of a systolic cycle in a realistic artery with the Lattice boltzmann BGK method. International journal of modern physics b, 17(1/2), 95-98. [details]

Artoli, A. M. M., Kandhai, B. D., Hoefsloot, H. C. J., Hoekstra, A. G., & Sloot, P. M. A. (2003). Lattice Boltzmann: a robust and accurate solver for interactive computational hymodynamics. Lecture Notes in Computer Science, 1034-1043. [details]

Hoekstra, A. G., van 't Hoff, J., Artoli, A. M. M., & Sloot, P. M. A. (2003). Lattice BGK simulations of unsteady flow in a 2D elastic tube. Lecture Notes in Computer Science, 997-1006. [details]

Iskra, K. A., van Albada, G. D., & Sloot, P. M. A. (2003). Time Warp cancellation optimisations on high latency networks. In S. J. Turner, & S. J. E. Taylor (Eds.), Proceedings seventh IEEE international symposium on distributed simulation and real time applications (pp. 128-135). Delft, The Netherlands: IEEE Computer Society. [details]

Kiryukhin, I., Saskov, K., Boukhanovsky, A. V., Keulen, W., Boucher, C. A., & Sloot, P. M. A. (2003). Stochastic modeling of temporal variability of HIV-1 population. Lecture Notes in Computer Science, 125-135. [details]

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2003). Problem solving environment for modelling stony coral morphogenesis. Lecture Notes in Computer Science, 639-648. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I. (LNCS; No. 2657). Heidelberg: Springer Verlag. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational Science-ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II. (LNCS; No. 2658). Heidelberg: Springer Verlag. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational science - ICCS 2003 : International conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003 : proceedings. - Pt III. (Lecture notes in computer science; No. 2659). Springer. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational science - ICCS 2003 : International conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003 : proceedings. - Pt IV. (Lecture notes in computer science; No. 2660). Springer. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational science - ICCS 2003 : International conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003 : proceedings: Pt I. (Lecture notes in computer science; No. 2657). Springer. [details]

Sloot, P. M. A., Abrahamson, D., Bogdanov, A. V., Dongarra, J. J., Zomaya, A. Y., & Gorbachev, Y. E. (2003). Computational science - ICCS 2003 : International conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003 : proceedings: Pt II. (Lecture notes in computer science; No. 2658). Springer. [details]

Sloot, P. M. A., Boucher, C. A., Kiryukhin, I., Saskov, K., & Boukhanovsky, A. V. (2003). A grid-based problem-solving environment for biomedicine. In S. Noerager (Ed.), Proceedings of the first European Healthgrid Conference, January, 16th-17th, 2003 (pp. 300-323). Brussels: Commission of the European Communities, Information Society Directorate-General. [details]

Sloot, P. M. A., van Albada, G. D., & Zudilova, E. V. (2003). A grid-based interactive visualisation of medical images. In S. Noerager (Ed.), Proceedings of the first European Healthgrid Conference, January, 16th-17th, 2003 (pp. 57-66). Brussels: Commission of the European Communities, Information Society Directorate-General. [details]

Spinnato, P. F., Portegies Zwart, S. F., Fellhauer, M., van Albada, G. D., & Sloot, P. M. A. (2003). Tools and Techniques for N-body Simulations. In R. C. Dolcetta (Ed.), Memorie della Societa Astronomica Italiana Supplement (Vol. 1, pp. 54) [details]

Tirado-Ramos, A., Zajac, K., Zhao, Z., Sloot, P. M. A., van Albada, G. D., & Bubak, M. (2003). Experimental grid access for dynamic discovery and data transfer in distributed interactive simulation systems. Lecture Notes in Computer Science, 284-292. [details]

Zajac, K., Bubak, M., Malawski, M., & Sloot, P. M. A. (2003). Towards a grid management system for HLA-based interactive simulations. In S. J. Turner, & S. J. E. Taylor (Eds.), Proceedings seventh IEEE international symposium on distributed simulation and real time applications (DS-RT 2003) (pp. 4-11). Delft: IEEE Computer Society. [details]

Zudilova, E. V., & Sloot, P. M. A. (2003). Virtual reality and desktop as a combined interaction-visualisation medium for a problem-solving environment. Lecture Notes in Computer Science, 1025-1034. [details]

2002

Merks, R. M. H., Hoekstra, A. G., Kaandorp, J. A., & Sloot, P. M. A. (2002). Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics. In ECMTB2002: 5th Conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts Milano, Italy: European Society of Mathemetical and Theoretical Biology. [details]

Sloot, P. M. A., Tan, C. J. K., Dongarra, J. J., & Hoekstra, A. G. (2002). Computational Science - ICCS 2002: International Conference Amsterdam, The Netherlands, April 21–24, 2002 : proceedings. (Lecture Notes in Computer Science; Vol. 2329). Springer. https://doi.org/10.1007/3-540-46043-8 [details]

Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2002). A Versatile Simulation Model for Hierarchical Treecodes. (Institute of Computer Science, University of Amsterdam; No. CS-2002-01). Informatics Institute. [details]
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Zudilova, E. V., & Sloot, P. M. A. (2002). A first step to a user centered approach to a development of adaptive simulation-visualization complexes. In Proceedings of the international conference of the systemics, Cybernetics and informatics (pp. 104-110). Orlando, Florida. [details]

2001

Hoekstra, A. G., Frijlink, M. O., Waters, L. B. F. M., & Sloot, P. M. A. (2001). Radiation forces in the discrete dipole approximation. Journal of the Optical Society of America, 18(8), 1944-1953. [details]

Overeinder, B. J., Schoneveld, A., & Sloot, P. M. A. (2001). Spatio-temporal correlations and rollback distributions in optimistick simulations. In Proceedings of the 15th workshop on parallel and distributed simulation Lake Arrowhead, CA: IEEE Computer Society Press. [details]

2000

Hoekstra, A. G., & Sloot, P. M. A. (2000). Biophysical and Biomedical Applications of Non-Spherical Scattering. In M. I. Mishchenko, J. W. Hovenier, & L. D. Travis (Eds.), Light Scattering by Nonspherical Particles, Theory Measurements and Applications (pp. 585-602). San Diego, San Francisco, New York, Boston, London: Academic Press. [details]

Hoekstra, A. G., & Sloot, P. M. A. (2000). Distributed Particle Simulation of Flow in Complex Geometries. In M. Ingber, H. Powers, & C. A. Brebbia (Eds.), High Performance Computing in Engineering VI (pp. 371-380). Wit Press. [details]

Iskra, K. A., van der Linden, F., Hendrikse, Z. W., Overeinder, B. J., van Albada, G. D., & Sloot, P. M. A. (2000). The implementation of dynamite: an environment for migrating PVM tasks. Operating Systems Review, 34(3), 40-55. [details]
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Spinnato, P. F., van Albada, G. D., & Sloot, P. M. A. (2000). Performance modelling of hybrid architectures. In U. Barberis (Ed.), SIMAI 2000, sommari abstracts (pp. 73-74). Rome: Società Italiana di Matematica Applicata e Industriale. [details]

1999

Merks, R. M. H., Kaandorp, J. A., & Sloot, P. M. A. (1999). The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies. In Theory and mathematics in biology and medicine: abstracts (pp. 345). European Society for Mathematical and Theoretical Biology (ESMTB). [details]

Sloot, P. M. A., Bubak, M. T., Hoekstra, A. G., & Hertzberger, L. O. (1999). Proceedings High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, the Netherlands. (Lecture Notes in Computer Science; No. 1593). Springer.

1998

Braan, J. M., Hoekstra, A. G., & Sloot, P. M. A. (1998). Prototyping an HPCNet distance learning environment: rationale and implementation. Department of Computer Systems, University of Amsterdam. [details]
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Buchner, H., Kaiser, S., Sloot, P. M. A., Fuchs, M., & Wassmuth, K. (1998). EEG/MEG Quellen Rekonstruktion: die Funktionen von CURRY und CAUCHY-par. In T. Lehman, V. Metzler, K. Spitzer, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin 1998: Algorithmen - Systeme - Anwendungen (pp. 455-459). Springer. [details]

Hoekstra, A. G., Grimminck, M. D., & Sloot, P. M. A. (1998). Large scale simulations of elastic light scattering by a fast dipole approximation. International Journal of Modern Physics C, 9(1), 87-102. [details]

Sloot, P. M. A., Bubak, M. T., & Hertzberger, L. O. (1998). Proceedings High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands. (Lecture Notes in Computer Science; No. 1401). Unknown Publisher.

Sloot, P. M. A., Bubak, M., & Hertzberger, L. O. (1998). High-performance computing and networking : international conference and exhibition, Amsterdam, The Netherlands, April 21-23, 1998 : proceedings. (Lecture Notes in Computer Science; No. 1401). Springer. [details]

van Halderen, A. W., Overeinder, B. J., Sloot, P. M. A., van Dantzig, R., Epema, D. H. J., & Livny, M. (1998). Hierarchical resource management in the polder metacomputing initiative. Parallel Computing, 24(12/13), 1807-1825. [details]

1997

Hertzberger, L. O., & Sloot, P. M. A. (1997). Proceedings High-Performance Computing and Networking (HPCN Europe '97), Vienna, Austria. (Lecture Notes in Computer Science; No. 1225). Unknown Publisher.

Hertzberger, L. O., & Sloot, P. M. A. (1997). Proceedings high-performance computing and networking. (Lecture Notes in Computer Science; No. 1225). onbekend: onbekend. [details]

Hoekstra, A. G., Hoffmann, W., Kartawidjaja, M. A., Overeinder, B. J., Santoso, J., & Sloot, P. M. A. (1997). A high performance simulation environment, project status report. Amsterdam: Departement of Computer Systems, University of Amsterdam. [details]

1996

Kaandorp, J. A., & Sloot, P. M. A. (1996). Modelling diffusion and flow limited morphogenesis of marine sessile organisms. In 3rd European conference of mathematics applied to biology and medicine (abstract) [details]

Kandhai, B. D., Sloot, P. M. A., & Huot, J. P. (1996). Constrained migration of an atmospheric circulation model. In HPCN Europe '96 Conference [details]

Liddell, H., Colbrook, A., Hertzberger, L. O., & Sloot, P. M. A. (1996). Proceedings High-Performance Computing and Networking (HPCN Europe '96), Brussels, Belgium. (Lecture Notes in Computer Science; No. 1067). Unknown Publisher.

Liddell, H., Colbrook, A., Hertzberger, L. O., & Sloot, P. M. A. (1996). Proceedings high-performance computing and networking. (Lecture Notes in Computer Science; No. 1067). Springer. [details]

Overeinder, B. J., Sloot, P. M. A., Heederik, R. N., & Hertzberger, L. O. (1996). A Dynamic Load Balancing System for Parallel Cluster Computing. In Future Generation Computer Systems [details]

Sloot, P. M. A. (1996). Editorial: Resource Management in Distributed Systems. Future Generation Computer Systems, 12, 1-2. https://doi.org/10.1016/0167-739X(95)00030-V [details]

de Ronde, J. F., Schoneveld, A., & Sloot, P. M. A. (1996). Properties of the Task Allocation Problem. (Technical Report; No. CS-96-03). onbekend (FdL). [details]
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1995

Bergman, M., & Sloot, P. M. A. (1995). IPS Technical Report. (Technical Report CAMAS; No. TR-2.1.2.4). onbekend: onbekend (FdL). [details]

Bergman, M., & Sloot, P. M. A. (1995). Domain Decomposition by Parallel and Weighted RSB. In J. J. Gerbrands, J. van Katwijk, M. R. van Steed, & J. F. M. Tonino (Eds.), ASCI'95 Proceedings of the first annual conference of the Advanced School for Computing and Imaging, Heijen, The Netherlands, May 16-18, 1995 (pp. 368-376) [details]

Bergman, M., Hoffmann, W., & Sloot, P. M. A. (1995). IPS Final Report. (Technical Report CAMAS; No. TR-2.1.2.5). onbekend: onbekend (FdL). [details]

Hoekstra, A. G., & Sloot, P. M. A. (1995). Development of parallel hierarchical methods. In PowerXplorer user report (pp. 70-76). Aachen: Parsytec. [details]

Hoekstra, A. G., & Sloot, P. M. A. (1995). Simulating elastic light scattering. In PowerXplorer User report: 1st edition (pp. 65-69). Aachen: Parsytec. [details]

Hoekstra, A. G., Sloot, P. M. A., & Hertzberger, L. O. (1995). Comparing the Parix and PVM parallel programming environments. In J. J. Gerbrands, J. van Katwijk, M. R. van Steen, & J. F. M. Tonino (Eds.), ASCI '95: Proceedings of the first annual conference of the Advanced School for Computing and Imaging (pp. 288-292)

Hoekstra, A. G., Sloot, P. M. A., & Hertzberger, L. O. (1995). Comparing the Parix and PVM parallel programming environments. In L. Finmo, & P. Fritzon (Eds.), Proceedings of the Workshop on Parallel Programming and Computation (ZEUS '95) and the 4th Nordic Transputer Conference (NTUG '95) (pp. 13-17). IOS Press. [details]
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Kaandorp, J. A., & Sloot, P. M. A. (1995). Parallel solvers for simulating morphogenesis. (PowerXplorer User Report). Parsytec Computer GmbH. [details]

Kaandorp, J. A., & Sloot, P. M. A. (1995). A parallel hybrid solver for diffusion limited growth. In L. Finmo, & P. Fritzon (Eds.), Parallel Programming and Applications Proceedings of the Workshop on Parallel Programming and Computation (ZEUS '95) and the 4th Nordic Transputer Conference (NTUG '95) (pp. 254-258). Amsterdam: IOS Press. [details]

Overeinder, B. J., & Sloot, P. M. A. (1995). Parallel Discrete Event Simulation Performance Modeling and Evaluation. (Technical Report; No. 2nd ed.). Universitatsrechenzentrum, Heinrich-Heine-Universitat. [details]
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Overeinder, B. J., & Sloot, P. M. A. (1995). Parallel Performance Evaluation through Critical Path Analysis. In G. Serazzi, & B. Hertzberger (Eds.), High-Performance Computing and Networking (HPCN Europe '95) (pp. 634-639). (LNCS; No. 919). Springer-Verlag. [details]
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Overeinder, B. J., & Sloot, P. M. A. (1995). Parallel discrete event simulation performance modelling and evaluation. In PowerXplorer User report; 1st edition (pp. 137-144). Aachen: Parsytec. [details]

Overeinder, B. J., Vesseur, J. J. J., van der Linden, F., & Sloot, P. M. A. (1995). A Communication Kernel for Parallel Programming Support on a Massively Parallel Processor System. In J. J. Gerbrands, J. van Katwijk, M. R. Steen, & J. F. M. Tonino (Eds.), Proceedings of the first annual conference of the Advanced School for Computing and Imaging (pp. 157-164) [details]

Overeinder, B. J., Vesseur, J. J. J., van der Linden, F., & Sloot, P. M. A. (1995). A Communication Kernel for Parallel Programming Support on a Massively Parallel Processor System. In L. Finmo, & P. Fritzon (Eds.), Proceedings of the Workshop on Parallel Programming and Computation (ZEUS'95) and the 4th Nordic Transputer Conference (NTUG'95) (pp. 259-266). IOS Press. [details]
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Pimentel, A. D., Hertzberger, L. O., & Sloot, P. M. A. (1995). Mermaid: modelling and evaluation research in MIMD Architecture design. (PowerXplorer User report). Parsytec. [details]

Pimentel, A. D., Hertzberger, L. O., & Sloot, P. M. A. (1995). Modelling and Evaluation Research in mimd Architecture Design (Mermaid). In P. Schreiber, & J. Knop (Eds.), PowerXplorer User Report (pp. 221-227). Universiteit Dusseldorf. [details]

Pimentel, A. D., van Brummen, J., Papathanassiadis, T., Sloot, P. M. A., & Hertzberger, L. O. (1995). Mermaid: modelling and evaluation research in MIMD architecture design. Department of Computer Systems, University of Amsterdam. [details]
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Pimentel, A. D., van Brummen, J., Papathanassiadis, T., Sloot, P. M. A., & Hertzberger, L. O. (1995). Mermaid: Modelling and Evaluation Research in mimd Architecture Design. In G. Serazzi, & L. O. Hertzberger (Eds.), Proc. of the High Performance Computing and Networking Conference (pp. 335-340). (Lecture Notes in Computer Science; No. 919). Springer Verlag. [details]
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Schoneveld, A., Kaandorp, J. A., & Sloot, P. M. A. (1995). Parallel Dynamic Complex Systems. (Technical Report). Parsytec Computer GmbH. [details]

Schoneveld, A., Kaandorp, J. A., & Sloot, P. M. A. (1995). Parallel dynamical complex systems. In PowerXplorer user report: 1st edition (pp. 152-156). Aachen: Parsytec. [details]

Sloot, P. (1995). Modelling and Simulation. In C. E. Vandoni, & C. Verkerk (Eds.), 1994 CERN School of Computing: Sopron, Hungary, 28 August-10 September 1994 : proceedings (pp. 177-226). (CERN; No. 95-01). CERN. https://doi.org/10.5170/CERN-1995-001 [details]
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Sloot, P. M. A. (1995). Computational Physics: Stochastic Simulation. (Technical Report; No. CS-95-06). onbekend: onbekend (FdL). [details]

Sloot, P. M. A. (1995). Guest Editorial: Massive Parallel Computing. Future Generation Computer Systems, 11, 113-114. https://doi.org/10.1016/0167-739X(94)00051-F [details]
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Sloot, P. M. A., & Voogd, J. M. (1995). Simulated annealing: A trade-off between vector and parallel implementations. In L. Finmo, & P. Fritzon (Eds.), Transputer and Occam Engineering Series, Parallel Programming and Applications (pp. 267-274). IOS Press. [details]

Sloot, P. M. A., Kaandorp, J. A., & Schoneveld, A. (1995). Dynamic Complex Systems (DCS): A New Approach to Parallel Computing in Computational Physics. (Technical Report; No. CS-95-08). onbekend: onbekend (FdL). [details]

Vesseur, J. J. J., Heederik, R. N., Overeinder, B. J., & Sloot, P. M. A. (1995). Experiments in Dynamic Load Balancing for Parallel Cluster Computing. In J. J. Gerbrands, J. van Katwijk, M. R. Steen, & J. F. M. Tonino (Eds.), Proceedings of the first annual conference of the Advanced School for Computing and Imaging (pp. 417-421) [details]

Vesseur, J. J. J., Heederik, R. N., Overeinder, B. J., & Sloot, P. M. A. (1995). Experiments in Dynamic Load Balancing for Parallel Cluster Computing. In L. Finmo, & P. Fritzon (Eds.), Proceedings of the Workshop on Parallel Programming and Computation (ZEUS'95) and the 4th Nordic Transputer Conference (NTUG'95) (pp. 189-194). IOS Press. [details]
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Voogd, J. M., & Sloot, P. M. A. (1995). Simulated Annealing: Comparison of Vector and Parallel Implementations. In J. J. Gerbrands, J. van Katwijk, M. R. van Steen, & J. F. M. Tonino (Eds.), ASCI'95 Proceedings of the first annual conference of the Advanced School for Computing and Imaging (pp. 213-222) [details]

Voogd, J. M., Sloot, P. M. A., van Dantzig, R., & Frenkel, D. (1995). Crystallization on a Sphere. (Technical Report). University of Dusseldorf and Parsytec. [details]

de Ronde, J. F., & Sloot, P. M. A. (1995). CAMAS-TR-2.1.3.3 MAP progress report. (Technical Report). onbekend: onbekend (FdL). [details]

de Ronde, J. F., & Sloot, P. M. A. (1995). Concepts of Meta Modelling: A case study of code development for distributed memory architectures. In J. J. Gerbrands, J. van Katwijk, M. R. van Steen, & J. F. M. Tonino (Eds.), Proceedings of the first annual conference of the Advanced School for Computing and Imaging, Heijen, The Netherlands (pp. 175-184). Advanced School for Imaging and Computing. [details]

de Ronde, J. F., Schoneveld, A., Overeinder, B. J., & Sloot, P. M. A. (1995). MAP Final Report. (ESPRIT III-CEC CAMAS; No. TR-2.1.3.4). onbekend: onbekend (FdL). [details]

de Ronde, J. F., van Halderen, A. W., & Sloot, P. M. A. (1995). CAMAS-TR-2.3.5.1 User Scenario UvA tools. (Technical Report). onbekend: onbekend (FdL). [details]

van Halderen, A. W., Sloot, P. M. A., & Vesseur, J. J. J. (1995). Parasol/SAD Final Report. (Technical Report CAMAS; No. TR-2.1.1.7). onbekend: onbekend (FdL). [details]

van Halderen, A. W., de Ronde, J. F., & Sloot, P. M. A. (1995). F2SAD - prediction capabilities. (Technical Report CAMAS; No. TR-2.2.4.6). onbekend (FdL). [details]
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van Halderen, A. W., de Ronde, J. F., & Sloot, P. M. A. (1995). Memory requirements of F2SAD. (Technical Report CAMAS; No. TR-2.2.4.5). onbekend (FdL). [details]
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van Halderen, A. W., de Ronde, J. F., & Sloot, P. M. A. (1995). SAD/Parasol II, Joined Report. (Technical Report CAMAS; No. TR-2.1.1.6). onbekend (FdL). [details]
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1994

Bergman, M., & Sloot, P. M. A. (1994). IPS position paper: preconditioning for the conjugate gradient method. (CAMAS Technical Report; No. TR-2.1.2.2). Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

Bergman, M., Hoffman, W., & Sloot, P. M. A. (1994). IPS progress report. (CAMAS Technical Report; No. TR-2.1.2.3). Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

Dikken, L., van der Linden, F., Vesseur, J. J. J., & Sloot, P. M. A. (1994). DynamicPVM: Dynamic Load Balancing on Parallel Systems. In U. Harms, & W. Gentzsch (Eds.), High Performance Computing and Networking, Volume II Networking and Tools (pp. 273-277). (LNCS; No. 797). Springer Verlag. [details]
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Doornbos, R. M. P., Hoekstra, A. G., Deurloo, K. E. I., de Grooth, B. G., Sloot, P. M. A., & Greve, J. (1994). Lissajous-Like Patterns in Scatter Plots of Calibration Beads. Cytometry, 16, 236-242. https://doi.org/10.1002/cyto.990160307 [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1994). New Computational Techniques to Simulate Light Scattering from Arbitrary Particles. Particle & Particle Systems Characterization, 11, 189-193. https://doi.org/10.1002/ppsc.19940110304 [details]
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Overeinder, B. J., Sloot, P. M. A., & Petersen, J. (1994). Finalization report: homogeneous PVM/PARIX. (CAMAS Technical Report; No. TR 2.3.4). Department of Computer Systems, University of Amsterdam. [details]
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Sloot, P. (1994). Modelling and simulation. Department of Computer Systems, University of Amsterdam. [details]
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Sloot, P. M. A., Hoekstra, A. G., & Hertzberger, L. O. (1994). A Comparison of the Iserver-Occam, Parix, Express, and PVM Programming Environments on a Parsytec GCel. In U. Harms, & W. Gentzsch (Eds.), High Performance Computing and Networking, Volume II Networking and Tools (pp. 253-259). (LNCS; No. 797). Springer Verlag. [details]
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Voogd, J. M., Dantzig, R., & Sloot, P. M. A. (1994). Two-dimensional Crystallisation on spherical surfaces. In M. Tomassini, & R. Gruber (Eds.), Proceedings of the 6th joint EPS-APS International Conference on Physics Computing (pp. 463-466). European Physical Society. [details]
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Voogd, J. M., Sloot, P. M. A., & Dantzig, R. (1994). Crystallization on a Sphere. Future Generation Computer Systems, 10(2/3), 359-361. https://doi.org/10.1016/0167-739X(94)90043-4 [details]

Voogd, J. M., Sloot, P. M. A., & Dantzig, R. (1994). Simulated Annealing for N-body Systems. In U. Harms, & W. Gentzsch (Eds.), High Performance Computing and Networking, Volume I:Applications (pp. 293-298). (LNCS; No. 796). Berlin: Springer Verlag. [details]

de Mes, A., & Sloot, P. M. A. (1994). Presentation on the status of Parasol. (CAMAS Technical Report; No. TR 2.1.1.5). Department of Computer Systems, University of Amsterdam. [details]
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de Mes, A., Beemster, M., de Ronde, J. F., & Sloot, P. M. A. (1994). arasol I technical report. (CAMAS Technical Report; No. TR-2.1.1.4). Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

de Ronde, J. F., & Sloot, P. M. A. (1994). Map design report. (CAMAS Technical Report; No. TR-2.1.3.2). Department of Computer Systems, University of Amsterdam. [details]
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de Ronde, J. F., Bergman, M., & Sloot, P. M. A. (1994). MAP position paper. (CAMAS Technical Report; No. TR 2.1.3.1). Department of Computer Systems, University of Amsterdam. [details]
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de Ronde, J. F., Sloot, P. M. A., Beemster, M., & Hertzberger, L. O. (1994). The CAMAS workbench: Computer Aided Migration of Applications System. Future Generation Computer Systems, 10(2/3), 305-308. https://doi.org/10.1016/0167-739X(94)90034-5 [details]

de Ronde, J. F., van Halderen, A. W., de Mes, A., Beemster, M., & Sloot, P. M. A. (1994). Automatic Performance Estimation of SPMD Programs on MPP. In W. Smit, L. Dekker, & J. C. Zuidervaart (Eds.), Massively Parallel Applications and Development (pp. 381-388). Amsterdam: Elsevier. [details]

van Halderen, A. W., de Ronde, J. F., Beemster, M., & Sloot, P. M. A. (1994). SAD progress report. (CAMAS Technical Report; No. TR-2.2.4.4). Department of Computer Systems, University of Amsterdam. [details]
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van Halderen, A. W., de Ronde, J. F., Beemster, M., & Sloot, P. M. A. (1994). SAD technical report. (CAMAS Technical Report; No. TR-2.2.4.3). Department of Computer Systems, University of Amsterdam. [details]
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van der Linden, F., Petersen, J., & Sloot, P. M. A. (1994). PVM/PARIX progress report. (CAMAS Technical Report; No. TR 2.3.3). Department of Computer Systems, University of Amsterdam. [details]
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1993

Bergman, M., & Sloot, P. M. A. (1993). BLAS: Basic linear algebra subsystems. (CAMAS Technical Report; No. 2.1.2.1). Department of Computersystems, University of Amsterdam. [details]
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Doornbos, R. M. P., Hoekstra, A. G., Deurloo, K. E. I., de Grooth, B. G., Sloot, P. M. A., & Greve, J. (1993). Polarization measurements in a flow cytometer: Lissajous patterns in scatter plots of calibration beads. Cytometry, suppl. 6. [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1993). Dipolar unit size in coupled dipole calculations of the scattering matrix elements. Optics Letters, 18, 1211-1213. https://doi.org/10.1364/OL.18.001211 [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1993). New computational techniques to simulate light scattering from arbitrary particles. In M. Maeda (Ed.), The 3rd international congress on optical particle sizing (pp. 167-172). [details]
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Hoekstra, A. G., & Sloot, P. M. A. (1993). Simulating elastic light scattering using high performance computing methods. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European simulation symposium 1993 (pp. 462-467). Society for Computer Simulation International. [details]
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Lonsdale, G., Clinckemaillie, J., Vlachoutsis, S., de Ronde, J. F., Sloot, P. M. A., & Floros, N. (1993). Crashworthiness simulation migration to distributed memory and MIMD machines. In The 26th international symposium on automotive technology and automation (pp. 237-244). Croydon: Automotive Automation Limited. [details]

Overeinder, B. J., & Sloot, P. M. A. (1993). Application of time warp to parallel simulations with asynchronous cellular automata. In A. Verbraeck, & E. J. H. Kerkchoffs (Eds.), European simulation symposium 1993 (pp. 397-402). Society for Computer Simulation International. [details]
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Sloot, P. M. A., & Hertzberger, L. O. (1993). PERFORM. Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

Sloot, P. M. A., & Hoekstra, A. G. (1993). Light scattering simulations on a massively parallel computer at the IC3A. Transputer Applications, 1, 42-49. [details]
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Sloot, P. M. A., & Reeve, J. F. (1993). The CAMAS workbench. (CAMAS Technical Report; No. TR-2.3.1.1). Amsterdam, Southampton: University of Amsterdam. [details]

Sloot, P. M. A., Voogd, J. M., de Kanter, D., & Hertzberger, L. O. (1993). Simulated annealing: comparison of vector and parallel implementations. (Technical report; No. CS-06-93). Department of Computer Systems, University of Amsterdam. [details]
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Sloot, P. M. A., ter Laak, A., Pandolfi, P., van Dantzig, R., & Frenkel, D. (1993). Crystallization on a sphere. In R. A. de Groot, & E. J. Nadrachal (Eds.), The 4th international conference physics computing (pp. 471-472). World Scientific. [details]
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Voogd, J. M., & Sloot, P. M. A. (1993). Crystallization on a sphere using the simulated annealing algorithm implemented on H.P.C. systems. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European simulation symposium (pp. 371-376). Society for Computer Simulation International. [details]
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de Mes, A., & Sloot, P. M. A. (1993). Parasol I progress report. (CAMAS Technical Report; No. TR-2.1.1.3). Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

de Ronde, J. F., & Sloot, P. M. A. (1993). Parasol I&II position paper. (CAMAS Technical Report; No. TR-2.1.1.1). Amsterdam: Dept. of computer Systems, University of Amsterdam. [details]

de Ronde, J. F., & Sloot, P. M. A. (1993). SAD position paper. (CAMAS Technical Report; No. TR-.2.2.4.1). Amsterdam: Dept. of computer Systems, University of Amsterdam. [details]

de Ronde, J. F., & Sloot, P. M. A. (1993). A simulation methodology for the prediction of SPMD programs performance. In A. Verbraeck, & E. J. H. Kerckhoffs (Eds.), European simulation symposium (pp. 24-25). Society for Computer Simulation International. [details]
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de Ronde, J. F., Bergman, M., Trenning, P., & Sloot, P. M. A. (1993). Application simulator. (CAMAS Technical Report; No. TR-2.1.1.2). Amsterdam: Department of Computer Systems, University of Amsterdam. [details]

de Ronde, J. F., van Halderen, A. W., Beemster, M., & Sloot, P. M. A. (1993). SAD/Parasol II progress report. (CAMAS Technical Report; No. TR-2.2.4.2). Department of Computer Systems, University of Amsterdam. [details]
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1992

Overeinder, B. J., Sloot, P. M. A., & Hertzberger, L. O. (1992). Time warp on a transputer platform: pilot study with asynchronous cellular automata. In M. Valero (Ed.), Parallel computing and transputer applications (PACTA 92) (pp. 1303-1312). (Transputer and OCCAM engineering series; No. 28/29). IOS Press. [details]
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Sloot, P. M. A., & Hoekstra, A. G. (1992). Implementation of a parallel conjugate gradient method for simulation of elastic light scattering. Computer in physics, 6, 323. [details]
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Sloot, P. M. A., Hoekstra, A. G., Hoffmann, W., & Hertzberger, L. O. (1992). Time complexity of a parallel conjugate gradient solver for light scattering simulations: theory and SPMD implementation. Dept. of comp. sys., University of Amsterdam. [details]
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Sloot, P. M. A., ter Laak, A., Pandolfi, P., & van Dantzig, R. (1992). Crystallization on a sphere: parallel simulation on a transputer network. Computer in physics, 6, 307. [details]

ter Laak, A., Hertzberger, L. O., & Sloot, P. M. A. (1992). Nonconvex continuous optimization experiments on a transputer system. In A. Allen (Ed.), Transputer systems : ongoing research (pp. 251-265). (Transputer and OCCAM Engineering; No. 25). Amsterdam [etc.]: IOS Press. [details]

van Muiswinkel, M., Trip, L. H., & Sloot, P. M. A. (1992). Parallel sound synthesis: parallel sonification of multivariate data on a transputer platform. In M. Valero (Ed.), Parallel computing and transputer applications (PACTA 92) (pp. 1156-1164). (Transputer and OCCAM engineering series; No. 28/29). Amsterdam [etc.]: IOS Press. [details]

1991

Hoekstra, A. G., Hertzberger, L. O., & Sloot, P. M. A. (1991). Simulation of elastic light scattering on distributed memory machines: abstract. Bulletin of the American Physical Society, 36, 1798. [details]
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Hoekstra, A. G., Sloot, P. M. A., Haan, M. J., & Hertzberger, L. O. (1991). Time complexity analysis for distributed memory computers: implementation of parallel conjugate gradient method. In J. van Leeuwen (Ed.), Computing Science in the Netherlands : jaarbeurs Utrecht 7 en 8 november 1991 : proceedings (pp. 249-266). Stichting Mathematisch Centrum. [details]
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Overeinder, B. J., Hertzberger, L. O., & Sloot, P. M. A. (1991). Parallel discrete event simulation. In W. J. Withagen (Ed.), Proceedings of the third workshop computersystems (pp. 19-30). Faculty of Electrical Engineering, Eindhoven University. [details]
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1990

Sloot, P. M. A., & Hoekstra, A. G. (1990). Morphological characteristics of nucleated bloodcells studied by elastic light scattering. In E. D. Hirleman (Ed.), Proceedings of the 2nd international congress on optical particle sizing (pp. 382-394). Arizona State University. [details]
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1989

Sloot, P. M. A., Carels, M. J., & Hoekstra, A. G. (1989). CACE: a case of embedded system development. In P. M. G. Apers, & J. van Leeuwen (Eds.), Computing science in the Netherlands (pp. 441-462). Amsterdam: CWI. [details]

Sloot, P. M. A., van der Liet, H., Hoekstra, A. G., & Figdor, C. G. (1989). Scattering matrix elements of biological particles measured in a flow through system: theory and practice. Applied Optics, 28(10), 1752-1762. https://doi.org/10.1364/AO.28.001752 [details]
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1986

Sloot, P. M. A., & Figdor, C. G. (1986). Elastic light scattering from nucleated bloodcells: rapid numerical analysis. Applied Optics, 25, 3559-3565. https://doi.org/10.1364/AO.25.003559 [details]
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2021

Buiten, G., Diks, C., Faber, A., Heemskerk, E., Mattsson, C., Takes, F., & Sloot, P. (2021). Netwerkanalyse biedt nieuwe inzichten voor clustergericht energiebeleid. Economisch-Statistische Berichten, 106(4804), 586-588. Advance online publication. https://esb.nu/esb/20068796/netwerkanalyse-biedt-nieuwe-inzichten-voor-clustergericht-energiebeleid [details]
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2011

Sato, M., Matsuoka, S., van Albada, G. D., Dongarra, J., & Sloot, P. M. A. (2011). Preface. Procedia Computer Science, 4, 1-6. https://doi.org/10.1016/j.procs.2011.04.001 [details]
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2010

Sloot, P. M. A. (2010). Computational science: A kaleidoscopic view into science. Journal of Computational Science, 1(4), 189. https://doi.org/10.1016/j.jocs.2010.11.001 [details]

Sloot, P. M. A., van Albada, G. D., & Dongarra, J. (2010). Preface. Procedia Computer Science, 1(1), 1-2. https://doi.org/10.1016/j.procs.2010.04.002 [details]
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2008

Rycerz, K., Bubak, M., Sloot, P. M. A., & Getov, V. (2008). HLA component based environment for distributed multiscale simulations. (CoreGRID technical report; No. TR-0137). CoreGRID Institute on Grid Systems, Tools, and Environments. http://www.coregrid.net/mambo/images/stories/TechnicalReports/tr-0137.pdf [details]

2005

Sloot, P. M. A., Kaandorp, J. A., Hoekstra, A. G., Ayache, N., Boissel, J-P., Brunak, S., Clapworthy, G., Fingberg, J., Lonsdale, G., Frangi, A. F., Deco, G., Hunter, P., Nielsen, P. L., Halstead, M., Hose, R., Magnin, I., Martin-Sanchez, F., van Sint Jan, S., & Viceconti, M. (2005). Towards Virtual Physiological Human: multilevel modelling and simulation of the human anatomy and phsyiology. Unknown Publisher. http://vph-institute.org/upload/file517569145f61b.pdf

2004

Sloot, P. M. A., & Hoekstra, A. G. (2004). Virtual Vascular Surgery on the Grid. ERCIM News, 59, 50-51. [details]
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1999

Sloot, P. M. A. (1999). De som der delen. (Oratiereeks; No. 7). Vossiuspers AUP. [details]
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1998

Braan, J. M., Hoekstra, A. G., & Sloot, P. M. A. (1998). Prototyping an HPCNet Distance Learning Environment: Rationale and Implementation. Amsterdam: WINS (oud WINS). [details]
2009

Sloot, P. M. A. (2009). Crisis computing: beslissingsondersteuning in een complexe wereld. Magazine Nationale Veiligheid en Crisisbeheersing, 7(8), 62-63. http://www.rijksoverheid.nl/documenten-en-publicaties/rapporten/2009/11/25/magazine-nationale-veiligheid-en-crisisbeheersing-november-december-2009.html [details]
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Sloot, P. M. A. (Author). (2009). Nederlandse software voorziet rampen. Web publication or website, Techzine. http://www.techzine.nl/nieuws/21334/nederlandse-software-voorziet-rampen.html

2006

Sloot, P. M. A. (2006). Handling Complexity. EnterTheGrid - Primeur Weekly. http://www.hoise.com/primeur/06/articles/weekly/AE-PR-02-06-29.html

1995

Voogd, J. M., Sloot, P. M. A., & van Dantzig, R. (1995). Kristallisatie op een boloppervlak. (Technical Report). FOM. [details]
2021

Korkmaz, H. I., Muniraj, V. S., & Sloot, P. M. A. (2021). Computational modeling of the post-burn immune response. Paper presented at 20th Congress of the International Society for Burn Injuries. https://isbi2021.navus.io/presentation/78943

2012

Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2012). Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling. 102-103. Abstract from 2nd European Conference on FLOODrisk Management, .

2011

Botman, D., Kaandorp, J. A., & Sloot, P. (2011). An integrated approach to infer the gene network in early development of the cnidarian Nematostella venctensis. 101. Poster session presented at International Workshop: Searching for Eve. http://www.hydra-meeting.de/docs/programm2011.pdf

Zarrabi, N., Prosperi, M., de Luca, A., & Sloot, P. M. A. (2011). Inferring HIV transmission networks from epidemic and genetic information. 138. Poster session presented at ECCS'11 European Conference on Complex Systems, Wien, Austria. http://www.eccs2011.eu/eccs11bookofabstracts.pdf

2010

Krzhizhanovskaya, V., Korkhov, V., Moscicki, J. T., & Sloot, P. M. A. (2010). Dynamic workload balancing with user-level scheduling for parallel applications on heterogeneous Grid resources. Abstract from HPC 2010, "High Performance Computing, GRIDS and clouds", An International Advanced Workshop, .
2009

Sloot, P. M. A. (2009). Complex Networks in Solid Tumour Metastatsis.

2008

Sloot, P. M. A. (2008). 'Computational eScience'.

Sloot, P. M. A. (2008). 'VIROLAB: a virtual laboratory for infectious diseases'.

Sloot, P. M. A. (2008). Complex Networks as modeling paradigm for complex systems.

Sloot, P. M. A. (2008). Multi-scale modeling of HIV dynamics using a Gridbased System-level approach.

Sloot, P. M. A. (2008). The Virtual Physiological Human: 'Virolab: Modeling Infectious Diseases'.

Ó Nualláin, B., van de Vijver, D., Boucher, C., Tirado Ramos, A., & Sloot, P. (2008). Enhanced decision support for HIV drug resistance interpretation. Reviews in Antiviral Therapy, 2008-2. http://www.virology-education.com/index.cfm/t/6th_European_HIV_Drug_Resistance_workshop/vid/15542406-17A4-A597-D9A008CC0596E87D

2007

Sloot, P. M. A. (2007). 'Multi-scale modeling of HIV dynamics using a Gridbased System-level approach'.

Sloot, P. M. A. (2007). Bio computing: The challenge of the Scales.

Sloot, P. M. A. (2007). Drug ranking by molecular modeling.

Sloot, P. M. A. (2007). The Virolab Virtual Laboratory.

Sloot, P. M. A. (2007). The molecule to man machine'.

Sloot, P. M. A. (2007). eScience in a real world.

2006

Sloot, P. M. A. (2006). Invited Lecture: Modeling Multi-Cellular Organisms with Distributed Cellular Automata.

Sloot, P. M. A. (2006). Multiscale Modeling and Simulation.

Sloot, P. M. A. (2006). The Virolab Virtual Laboratory.

Sloot, P. M. A. (2006). Time warping simulations.

2005

Sloot, P. M. A. (2005). The Virolab Virtual Laboratory.

2004

Sloot, P. M. A. (2004). BioGrid.

Sloot, P. M. A. (2004). Dynamite: Explosive solutions to resource sharing.

Sloot, P. M. A. (2004). Modeling Infectious Diseases.

Sloot, P. M. A. (2004). Simulating distributed correlated particle systems.

2003

Sloot, P. M. A. (2003). Modeling Complex Systems.

Sloot, P. M. A. (2003). Scientific Visualization and Virtual Reality.

2002

Sloot, P. M. A. (2002). A Multi-modal Interface for an Interactive Simulated Vascular Reconstruction System.

Sloot, P. M. A. (2002). Advanced Computer Modeling and Simulation.

Sloot, P. M. A. (2002). CrossGrid.

Sloot, P. M. A. (2002). Dynamic task migration on the Grid.

Sloot, P. M. A. (2002). High performance computing and Grids.

Sloot, P. M. A. (2002). Interactive Simulation and Visualization of Bloodflow.

Sloot, P. M. A. (2002). Interactive visualisation.

2001

Sloot, P. M. A. (2001). Emergence and SelfOrganisation.

Sloot, P. M. A. (2001). Interactieve Numerieke Natuurkunde.

Sloot, P. M. A. (2001). Risico analyse door Computer Simulatie.

2000

Sloot, P. M. A. (2000). Computing 2020: A Simulation Perspective.

Sloot, P. M. A. (2000). Modeling Multi-Cellular Organisms with Distributed Cellular Automata.

Sloot, P. M. A. (2000). Modelling with Cellular Automata.

Sloot, P. M. A. (2000). Self-Organized Criticality in Simulation of Correlated Systems.
Prijs / subsidie

Sloot, P. M. A. (2010). Leading Scientist Award November 2010.

Zarrabi, N., Mancini, E., Tay, J. C. & Sloot, P. M. A. (2010). Modeling HIV-1 intracellular replication: two simulation approaches. http://www.iccs-meeting.org/iccs2010/outstanding-paper-award.html

Sloot, P. M. A. (2009). DISTINGUISHED SERVICE AWARD "In Recognition and Appreciation of His Outstanding Service to The Profession of Computer Science and Applied Computing".

Sloot, P. M. A. (2009). World Comp Service Award. http://uva.computationalscience.nl/news/worldcomp2009-award-for-prof.-peter-sloot

Sloot, P. M. A. (2009). I/O Award Dutch ICT SIREN 2009. http://www.ictonderzoek.net/?m=336

Sloot, P. M. A. (2008). Cheng Tsang Man visiting professor award.

Sloot, P. M. A. (2008). NAKFI award.

Lidmaatschap / relevante positie

Sloot, P. M. A. (2010). Visiting Professor Nanyang University of Technology (NTU), Singapore, Visiting Professor Nanyang University of Technology (NTU), Singapore.

Sloot, P. M. A. (2010-2011). Visiting Professor St. Petersburg State University, Russia, St. Petersburg State University, Russia.

Sloot, P. M. A. (2008). Scientific advisor, Wetenschappelijke Advies Raad Stichting SURF.

Sloot, P. M. A. (2008). Scientific advisor, Lorentz Center, Universiteit Leiden.

Sloot, P. M. A. (2008). Scientific advisor, AgH University of Science and Technology, Krakow, Poland.

Sloot, P. M. A. (2008). Scientific advisor, UK e-Science Strategic Advisory Team. http://staff.science.uva.nl/~sloot/TempWebpages/default.htm

Sloot, P. M. A. (2008). Scientific advisor, NIP: Nederlands Instituut in St. Peterburg.

Sloot, P. M. A. (2008). Scientific advisor, Russian Academy of Science.

Sloot, P. M. A. (2008). Scientific advisor, Informatica Kamer Nederland.

Sloot, P. M. A. (2007). Scientific advisor, Informatica Kamer Nederland.

Sloot, P. M. A. (2007). Scientific advisor, Lorentz Center, Universiteit Leiden.

Sloot, P. M. A. (2007). Scientific advisor, Advies Raad Stichting SURF.

Sloot, P. M. A. (2007). Scientific advisor, NIP: Nederlands Instituut in St. Peterburg, Russia.

Sloot, P. M. A. (2007). Scientific advisor, AgH University of Science and Technology, Krakow, Poland.

Sloot, P. M. A. (2007). Scientific advisor, UK e-Science Strategic Advisory Team.

Sloot, P. M. A. (2007). Scientific advisor, Russian Academy of Sciences.

Sloot, P. M. A. (2006). Scientific advisor, Informatica Kamer Nederland.

Sloot, P. M. A. (2006). Scientific advisor, AgH University of Science and Technology, Krakow, Poland.

Sloot, P. M. A. (2006). Scientific advisor, Russian Academy of Sciences.

Sloot, P. M. A. (2006). Scientific advisor, Lorentz Center, Universiteit Leiden.

Sloot, P. M. A. (2006). Scientific advisor, NIP: Nederlands Instituut in St. Peterburg.

Sloot, P. M. A. (2005). Scientific advisor Wetenschappelijke Advies Raad Stichting SURF, Stichting SURF.

Sloot, P. M. A. (2005). Visiting Professorship Nanyang Technological University, Nanyang Technological University.

Sloot, P. M. A. (2005). Scientific adviser NIP, Nederlands Instituut in St. Peterburg.

Sloot, P. M. A. (2005). Scientific advisor Lorentz Center, Universiteit Leiden, Leiden.

Sloot, P. M. A. (2005). Visiting Professorship Griffith University (Brisbane, Australia), Griffith University.

Mediaoptreden

Sloot, P. M. A. (17-02-2013). Criminal Network Intervention Models [Television]. Criminal Network Intervention Models. http://www.youtube.com/watch?v=e1h3FqqN-Og&feature=youtu.be

Sloot, P. M. A. (01-01-2013). Science and Education in Singapore [Print]. Science and Education in Singapore. http://uva.computationalscience.nl/Members/pmasloot/sloot%20NOS%20nieuws%2026-1-2013.mov

Sloot, P. M. A. (01-01-2012). Complex Systems [Print]. Complex Systems. http://www.uva.nl/en/news-events/news/uva-in-the-spotlight/prof.-peter-sloot/interview-with-prof.-peter-sloot-introduction.html

Sloot, P. M. A. (01-01-2012). De Mexicogriep hield toch harder huis [Print]. De Mexicogriep hield toch harder huis. http://uva.computationalscience.nl/Members/pmasloot/Interview%20PS%20over%20Mexico%20Griep%20Volkskrant%2030%20Juni%202012.pdf

Sloot, P. M. A. (01-01-2012). Modellen voor de Pillen Pauze [Print]. Modellen voor de Pillen Pauze. http://uva.computationalscience.nl/Members/pmasloot/VolksKrant%20Interview%20PS%20over%20de%20pillenpauze%20in%20HIV%20%2007%20July%202012.pdf

Sloot, P. M. A. (01-01-2012). De wetenschap van Skolkovo [Print]. De wetenschap van Skolkovo. http://uva.computationalscience.nl/Members/pmasloot/Interview%20PS%20in%20Economie%20Katern%20over%20Skolkovo%20in%20VolksKrant%2028%20Juni%202012.pdf

Sloot, P. M. A. (01-01-2012). Silicon Valley Skolkovo [Print]. Silicon Valley Skolkovo. http://uva.computationalscience.nl/Members/pmasloot/Quote%20van%20Sloot%20in%20Telegraaf%2020120628.pdf

Sloot, P. M. A. (23-05-2011). Дмитрий Медведев встретился с иностранными учёными, работающими в России [Web]. Дмитрий Медведев встретился с иностранными учёными, работающими в России. http://kremlin.ru/events/president/news/11309

Sloot, P. M. A. (01-01-2011). Poetin Prijs [Print]. Poetin Prijs. http://www.science.uva.nl/research/scs/papers/publicity/NRC_20110505_1_010_article1.pdf

Sloot, P. M. A. (01-01-2011). Toekomst voorspellen met slijmzwammen [Print]. Toekomst voorspellen met slijmzwammen. http://www.science.uva.nl/research/scs/papers/publicity/Folia30-jaargang-64-2011-PS.pdf

Sloot, P. M. A. (01-01-2011). Opening Advanced Computing Laboratory [Print]. Opening Advanced Computing Laboratory. http://strf.ru/material.aspx?CatalogId=222&d_no=39979

Sloot, P. M. A. (01-01-2011). De rekenregels van de natuur [Print]. De rekenregels van de natuur. http://www.wetenschap24.nl/programmas/labyrint/labyrint-radio/2011/juli/31-07.html

Sloot, P. M. A. (01-01-2011). De ICTer als onderbetaalde uitvinder [Print]. De ICTer als onderbetaalde uitvinder. http://www.automatiseringgids.nl/achtergrond/2011/20/binnen%20de%20it%20werken%20de%20uitvinders%20van%20deze%20tijd

Sloot, P. M. A. (01-01-2011). Opening Advanced Computing Laboratory [Print]. Opening Advanced Computing Laboratory. http://www.youtube.com/watch?v=AAegJFXze_k

Sloot, P. M. A. (16-11-2010). Russische subsidie voor Nederlandse hoogleraar [Web]. Russische subsidie voor Nederlandse hoogleraar.

Sloot, P. M. A. (19-09-2010). Wetenschap in Amsterdam [Print] Amsterdam, Amsterdam FM Radio. Wetenschap in Amsterdam. http://www.salto.nl/streamplayer/ondemand_stads.asp?d=19&m=09&y=10&t=1100

Sloot, P. M. A. (31-07-2010). The Fascination [Print] UvA, Amsterdam. The Fascination.

Sloot, P. M. A. (06-06-2010). Computer model predicts best HIV medication [Print] UvA, Amsterdam. Computer model predicts best HIV medication. http://www.scienceparkamsterdam.nl/nieuws/nieuwsbrief/juni-2010/computermodel-voorspelt-beste-hiv-medicatie

Sloot, P. M. A. (01-01-2010). Leading Scientist Award [Print]. Leading Scientist Award. http://www.alphagalileo.org/ViewItem.aspx?ItemId=89810&CultureCode=en

Sloot, P. M. A. (01-01-2010). Leading Scientist Award [Print]. Leading Scientist Award. http://www.uva.nl/en/news-events/news/uva-news/content/news/2010/11/russia-awards-3-3-million-euros-to-uva-professor-peter-sloot.html

Sloot, P. M. A. (01-01-2010). Voorspellen als wetenschap [Print]. Voorspellen als wetenschap. http://uva.computationalscience.nl/news/interview-in-het-parool-met-peter-sloot-op-23-11-2010

Sloot, P. M. A. (01-01-2010). Leading Scientist Award [Print]. Leading Scientist Award. http://uva.computationalscience.nl/news/russia-awards-3.3-million-euros-to-uva-professor-peter-sloot

Sloot, P. (01-01-2010). Interview for "SurfWEBcahier" March 2005 [Print]. Interview for "SurfWEBcahier" March 2005.

Sloot, P. M. A. (01-01-2010). Computational Modeling reveals a better understanding of invasive tumor growth and response to therapy of solid malignancies. [Print]. Computational Modeling reveals a better understanding of invasive tumor growth and response to therapy of solid malignancies.. http://www.science.uva.nl/english/home.cfm/8A2B843B-1321-B0BE-68C80C9FE979F629

Sloot, P. M. A. (01-01-2010). Leading Scientist Award [Print]. Leading Scientist Award. http://www.bnr.nl/static/jspx/play.jspx?url=http://streaming.bnr.nl/csStreamingAudio/programmas/y2010/m11/d23/denk1_20101123.mp3&titel=BNR

Sloot, P. M. A. (01-01-2010). Cellular automatons revisited [Print] UvA, Amsterdam. Cellular automatons revisited.

Sloot, P. M. A. (01-01-2010). Leading Scientist Award [Print]. Leading Scientist Award. http://nos.nl/artikel/198704-russische-subsidie-voor-nederlandse-hoogleraar.html

Sloot, P. M. A. (15-06-2009). Doorbraak bij hiv-medcijnen. Doorbraak bij hiv-medcijnen. https://www.scienceguide.nl/2009/06/doorbraak-bij-hiv-medcijnen/

Sloot, P. M. A. (15-06-2009). Computermodel biedt kansen tegen hiv. Computermodel biedt kansen tegen hiv.

Sloot, P. M. A. (15-06-2009). Computermodel biedt kansen tegen hiv. Computermodel biedt kansen tegen hiv. https://www.nu.nl/wetenschap/2022737/computermodel-biedt-kansen-tegen-hiv.html

Sloot, P. M. A. (01-01-2009). Interview on Virolab [Print]. Interview on Virolab. http://ec.europa.eu/information_society/activities/health/docs/monthly_focus/200903virolab.pdf

Sloot, P. M. A. (01-01-2009). Early Warning Software to prevent flooding [Print]. Early Warning Software to prevent flooding. http://www.rnw.nl/nl/

Sloot, P. M. A. (01-01-2009). Super Computer netwerk voorspelt rampen [Print]. Super Computer netwerk voorspelt rampen. http://www.computable.nl/artikel/ict_topics/overheid/3081906/1277202/supernetwerk-voorspelt-natuurrampen.html

Sloot, P. M. A. (01-01-2009). Hoe?Zo! Radio of Teleac/NOT: Drug Resistance model HIV [Print]. Hoe?Zo! Radio of Teleac/NOT: Drug Resistance model HIV.

Sloot, P. M. A. (01-01-2009). Drug Ranking Computational Model [Print]. Drug Ranking Computational Model. http://www.teleac.nl/radio/index.jsp?site=site_radio&category=1683626&nr=134903&item=2487143

Sloot, P. M. A. (01-01-2009). Early Warning Software to prevent flooding [Print]. Early Warning Software to prevent flooding. http://noorderlicht.vpro.nl/afleveringen/42541409/

Sloot, P. M. A. (01-01-2009). Software waarschuwt voor rampen [Print]. Software waarschuwt voor rampen. http://www.nu.nl/internet/2088777/nederlandse-software-waarschuwt-rampen.html

Sloot, P. M. A. (01-01-2009). Urban Flooding [Print]. Urban Flooding. http://www.bnr.nl/radio/programmas/denktank/

Sloot, P. M. A. (01-01-2007). I/O InformaticaOnderzoek, 4(2), April 2007 (in Dutch) has interviews with Peter Sloot and two of our Computer Science students about Computer Science education in the Netherlands [Print]. I/O InformaticaOnderzoek, 4(2), April 2007 (in Dutch) has interviews with Peter Sloot and two of our Computer Science students about Computer Science education in the Netherlands.

Sloot, P. M. A. (20-06-2006). Interview in the "Hoe? Zo!" magazine on Dutch Radio on Virolab [Print]. Interview in the "Hoe? Zo!" magazine on Dutch Radio on Virolab.

Sloot, P. M. A. (01-01-2006). Interview in "Transfer - Vakblad over Internationalisering in het Hoger Onderwijs" vol. 13, July 2006 [Print]. Interview in "Transfer - Vakblad over Internationalisering in het Hoger Onderwijs" vol. 13, July 2006.

Sloot, P. M. A. (01-01-2006). Interview in the Folia magazine [Print]. Interview in the Folia magazine.

Sloot, P. M. A. (01-01-2006). Interview in the staff magazine of the UvA [Print]. Interview in the staff magazine of the UvA.

Sloot, P. M. A. (01-04-2005). Research on Cellular Automata [Print]. Research on Cellular Automata.

Sloot, P. (26-02-2005). Interview for NRC Handelsblad [Print]. Interview for NRC Handelsblad.

Sloot, P. M. A. (01-01-2004). Emergence of Traffic Jams [Print]. Emergence of Traffic Jams. http://cgi.omroep.nl/cgi-bin/streams?/tv/vara/nieuwslicht/bb.20041210.asf

Sloot, P. M. A. (01-01-2004). Grid Computing [Print]. Grid Computing. http://www.science.uva.nl/research/scs/oud/News/NRC-25sept2004.png

Sloot, P. M. A. (01-01-2004). How To Plug Europe's Brain Drain [Print]. How To Plug Europe's Brain Drain. http://www.time.com/time/magazine/article/0,9171,574849-2,00.html

Tijdschriftredactie

Sloot, P. M. A. (editor) (2011). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2011). Journal of Computational Science (Journal).

Sloot, P. M. A. (editor) (2010). International Transactions on Systems Science and Applications (Journal). http://fatech.org.uk/press/itssa/

Sloot, P. M. A. (editor) (2010). International Journal of Information Retrieval Research (Journal).

Sloot, P. M. A. (editor) (2010). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2010). Journal of Computational Science (Journal).

Sloot, P. M. A. (editor) (2009). Journal of Computational Science (Journal). http://ees.elsevier.com/jocs/

Sloot, P. M. A. (editor) (2009). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2009). International Journal of Information Retrieval Research (Journal). http://www.irma-international.org/journals/details.asp?id=34686

Sloot, P. M. A. (editor) (2009). International Transactions on Systems Science and Applications (Journal).

Sloot, P. M. A. (editor) (2008). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2008). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2008). International Transactions on Systems Science and Applications (Journal).

Sloot, P. M. A. (editor) (2007). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2007). International Transactions on Systems Science and Applications (Journal).

Sloot, P. M. A. (editor) (2007). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2006). International Transactions on Systems Science and Applications (Journal).

Sloot, P. M. A. (editor) (2006). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2006). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2005). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2003). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2002). Future Generation Computer Systems (Journal).

Sloot, P. M. A. (editor) (2001). Future Generation Computer Systems (Journal).

Spreker

Quax, R. (speaker) & Sloot, P. M. A. (speaker) (18-9-2013). Dissipation and integration of Shannon information, IPCS satellite meeting during ECCS'13, Barcelona.

Sloot, P. M. A. (invited speaker) (15-11-2012). ICT an as `enabling technology'. Position of the Netherlands and areas for cooperation, Russian-Dutch University Partnerships: Shaping Innovative Academic and Research Agenda, Moscow.

Sloot, P. M. A. (invited speaker) (22-10-2012). Information Spreading in Complex Agent Networks: An Odyssey from a virus' point of view, IEEE CIT 2012, Chengdu, China. http://www.ee.uestc.edu.cn/cit2012/keynote.php

Sloot, P. M. A. (invited speaker) (22-10-2012). Computational Science: building virtual worlds, Invited lecture, National University of Defense Technology, Changsha, China.

Sloot, P. M. A. (invited speaker) (18-9-2012). De Russische Wetenschap Renaissance, Spui 25, Licht op Rusland, Amsterdam. http://www.spui25.nl/archief/2012/2012/2012/content/folder/09/licht-op-rusland-het-land-van-vele-mogelijkheden.html?page=5&pageSize=20

Sloot, P. M. A. (invited speaker) (14-8-2012). Networks: Complex Futures, LERU Bright Conference 2012, Amsterdam. http://www.leru.org/index.php/public/news/universiteit-van-amsterdam-hosts-bright-conference-2012/

Sloot, P. M. A. (invited speaker) (3-7-2012). Modelling for Pandemic Preparedness, Singapore Cooperation Programme, Singapore. http://www.scp.gov.sg/content/scp/index.html

Sloot, P. M. A. (invited speaker) (18-6-2012). The Inspiration of Alan Turing, Kenniscafé, Amsterdam. http://www.debalie.nl/artikel.jsp?articleid=451995

Sloot, P. M. A. (invited speaker) (14-5-2012). Sex and the City: Modelling HIV from Molecule to Mankind, Lecture, Amsterdam; Het Genootschap ter bevordering van Natuur-, Genees- en Heelkunde, Sanguin/AMC. http://www.science.uva.nl/actueel/Agenda.cfm/C8EA73DE-D80D-4192-960B77F08953FD17

Sloot, P. M. A. (invited speaker) (2-12-2011). "Move over Darwin, Marx and Einstein: We will take it from here! ", 30 Jaar Informatica, Amsterdam. http://www.30-jaar-informatica.nl/program.html

Sloot, P. M. A. (invited speaker) (23-6-2011). Flop/s that work for you!, SuperComputing Education Prospectives, St. Petersburg.

Sloot, P. M. A. (speaker) (26-1-2011). Multi-scale modelling of the Infectious Diseases,
Scaling in complex systems.

Sloot, P. M. A. (invited speaker) (10-11-2010). The Game of Life and Death, Dag van de Zelforganistie, Rotterdam.

Sloot, P. M. A. (invited speaker) (15-7-2010). Of Molecules and Man, VPH-Talks, Bonn, Germany.

Sloot, P. M. A. (invited speaker) (11-5-2010). Gridbased Decision Support in Medicine, GPC 2010, Hualien, Taiwan.

Sloot, P. M. A. (invited speaker) (10-5-2010). Fighting AIDS with computational science, IIS Taipei Seminar, Academica Sinica Taipei, Taiwan.

Sloot, P. M. A. (invited speaker) (18-3-2010). Simuleren voor gezondheid, ICT Delta, WTC Delta.

Sloot, P. M. A. (invited speaker) (24-2-2010). Mesoscopic modelling of growth and form, SDWA Meeting, NUS, Singapore.

Sloot, P. M. A. (invited speaker) (11-2-2010). Sex and the City: Modelling HIV from Molecule to man, Health Services & Systems Research, Duke-NUS Medical School, Singapore.

Sloot, P. M. A. (invited speaker) (3-2-2010). A discrete world: If Cellular automata are the answer, then what was the question?, SCE Seminar, Singapore.

Sloot, P. M. A. (invited speaker) (20-11-2009). Understanding epidemics through eScience, Dutch Boards of Universities, UvA, Amnsterdam, NL.

Sloot, P. M. A. (invited speaker) (5-11-2009). Acceptance Talk for the NSF I/O Award, Sirene 2009, University of Twente, NL. http://www.ictonderzoek.net/?m=336

Sloot, P. M. A. (invited speaker) (24-9-2009). Comparatieve HIV Drugranking, Infectious diseases, Amsterdam Medical Center, NL.

Sloot, P. M. A. (invited speaker) (25-8-2009). Sex and the City: Modelling HIV from Molecule to Man, International Conference on Convergence and Hybrid Information Technology, Daejeon.

Sloot, P. M. A. (invited speaker) (13-7-2009). Sex and the City: Modelling HIV from Molecule to Man, WORLDCOMP 09, Las Vegas USA.

Sloot, P. M. A. (invited speaker) (8-6-2009). Complex Networks in Solid Tumour Metastasis, NAKFI Meeting Washington Toretski Lab, Washington USA.

Sloot, P. M. A. (invited speaker) (5-6-2009). Computational Science for Catastrophes, PvdA en vz 2de kamer, Amsterdam.

Sloot, P. M. A. (invited speaker) (24-4-2009). ‘Sex and the City’: Eenvoudige Modellen voor Complexe-Netwerken, Leve de Wiskunde Congres, CWI, Amsterdam.

Sloot, P. M. A. (invited speaker) (2-4-2009). Mesoscopic Bloodflow Simulations, ONERA Science Colloquium, Paris, France.

Sloot, P. M. A. (invited speaker) (2-4-2009). Modelling Infectious Diseases with Cellular Automata and Complex Networks, ONERA Science Colloquium, Paris, France.

Sloot, P. M. A. (invited speaker) (20-3-2009). Modelling Sexual Contact Networks and HIV, Spatial dynamics symposium, Gainesville USA.

Sloot, P. M. A. (invited speaker) (15-3-2009). Mesoscopic modelling of Dynamical Systems, MU seminair, Miami University USA,.

Sloot, P. M. A. (invited speaker) (16-2-2009). The end of gridcomputing, the beginning of eScience, Perspectives Seminar: The future of GridComputing, Dagstuhl Germany.

Sloot, P. M. A. (invited speaker) (7-2-2009). Sex and the city: Modelling contact networks, PDCC Seminar, Singapore NTU.

Sloot, P. M. A. (invited speaker) (6-2-2009). The Limits of Computing, PDCC Seminar, Singapore NTU.

Sloot, P. M. A. (invited speaker) (20-1-2009). Multi-scale modeling of HIV dynamics using a Gridbased System-level approach, NTU SCE Seminar, Singapore.

Sloot, P. M. A. (invited speaker) (7-11-2008). Challenges of Multiscale modeling and simulation, -, Omaha, University of Nebraska.

Sloot, P. M. A. (invited speaker) (22-10-2008). Virolab: Modeling Infectious Diseases, The Virtual Physiological Human, Brussels, Belgium.

Sloot, P. M. A. (invited speaker) (17-10-2008). VIROLAB: a virtual laboratory for infectious diseases, Facing the Challenge of Infectious Diseases – Integrating mathematical modeling, computational thinking, and ICT, Turin, Italy.

Sloot, P. M. A. (invited speaker) (29-9-2008). Computational eScience: Bridging the Scales from Molecule to Man, High Performance Applications Workshop, Santiago de Compostela, Spain.

Sloot, P. M. A. (invited speaker) (23-9-2008). Computational eScience: How complex Systems in Silico can drive Multicore Processing, Simulating the Future; Using One Million Cores and Beyond, Lyon, France.

Sloot, P. M. A. (invited speaker) (9-9-2008). e-Science from Molecule to Man, eScience AHM, Edinburgh, Scotland.

Sloot, P. M. A. (invited speaker) (4-7-2008). ViroLab: Distributed Decision Support in a virtual laboratory for infectious diseases, HPC 200, Cetraro, Italy.

Sloot, P. M. A. (invited speaker) (4-6-2008). Ranking Drugs in HIV, HealthGrid, BioGrid, Chicago.

Sloot, P. M. A. (invited speaker) (2-6-2008). Multi-scale modeling of HIV dynamics using a Gridbased System-level approach, HealthGrid, Chicago.

Sloot, P. M. A. (invited speaker) (26-5-2008). Understanding and Fighting HIV/AIDS with Computational Science, The Netherlands Institute in Saint-Petersburg.

Sloot, P. M. A. (invited speaker) (23-5-2008). Understanding and Fighting HIV/AIDS with Computational Science, Public Lectures on Arts and Sciences, St. Petersburg, NIP.

Sloot, P. M. A. (invited speaker) (15-5-2008). Integration of evidence for Infectious diseases decision support, Krakow Grid Seminar, AGH, Krakow, Poland.

Sloot, P. M. A. (invited speaker) (28-3-2008). Percolation in Complex Networks, Colbud Institute for Advanced Study, Budapest.

Sloot, P. M. A. (invited speaker) (27-3-2008). Linking Virolab to Euresist, 6th European HIV Drug Resistance Workshop, Budapest.

Sloot, P. M. A. (invited speaker) (10-3-2008). Computational eScience, NCF-NWO voordracht, Baarn, Netherlands.

Sloot, P. M. A. (invited speaker) (5-3-2008). Scaling behavior of Complex Networks, ITMO, St. Petersburg, Russia.

Sloot, P. M. A. (invited speaker) (2008). Complex System Simulation: Guest Lectures, AGH and WSZIB, May 5th - 14th, Krakow, Poland.

Sloot, P. M. A. (invited speaker) (2008). HIV drug-ranking: Bridging the Scales from Molecule to Man, The National Academies, Keck Future Initiatives, November 12 - 15th, Irvine, California.

Sloot, P. M. A. (invited speaker) (24-10-2007). Virolab: Modeling HIV from molecule to epidemiology, eChallenges, 24/10 - 26/10, The Hague.

Sloot, P. M. A. (invited speaker) (15-10-2007). Virolab: Modeling HIV from molecule to epidemiology (keynote), CGW 07, 15/10 - 19/10, Krakow, Polen.

Sloot, P. M. A. (invited speaker) (11-10-2007). Challengers 2007 (keynote), Challengers 2007, 11/10 - 12/10, Athens.

Sloot, P. M. A. (invited speaker) (30-9-2007). Complex Networks for Spreading phenomena, ECCS, 30/9 - 5/10, Dresden.

Sloot, P. M. A. (invited speaker) (3-9-2007). Mapping parallel algorithms to parallel systems (keynote), PACT, 3-7 September, Pereslav, Rusland.

Sloot, P. M. A. (invited speaker) (27-8-2007). Automata 2007 (keynote), Automata 2007, 27-29 August, Toronto, Canada.

Sloot, P. M. A. (invited speaker) (1-7-2007). Bio computing: The challenge of the Scales (keynote), Istanbul Turkey, 1 - 9 July.

Sloot, P. M. A. (invited speaker) (29-6-2007). Multi-scale modeling of HIV dynamics using a Gridbased System-level approach, Talia's Uni Virolab, Italy.

Sloot, P. M. A. (invited speaker) (26-6-2007). A plethora of distributed resource scheduling (keynote), HPCC Cetraro, 26 - 29 June, Italy.

Sloot, P. M. A. (invited speaker) (14-5-2007). The Virolab Virtual Laboratory (keynote), CCGRID/BioGrid, 14-17 May, Rio de Janero, Brazil.

Sloot, P. M. A. (invited speaker) (24-4-2007). Drug ranking by molecular modeling (keynote), HealthGrid, 24-27 April, Geneve.

Sloot, P. M. A. (invited speaker) (13-3-2007). Multiscale Computation, CWI Amsterdam Bricks Symposium, Amsterdam.

Sloot, P. M. A. (invited speaker) (2007). eScience in a real world, ICT Delta, Utrecht.

Sloot, P. M. A. (invited speaker) (2007). Multiscale Modeling and Simulation, Onera, Paris.

Sloot, P. M. A. (invited speaker) (2007). Huygens Lezing, Huygens Lezing Amsterdam, Amsterdam.

Sloot, P. M. A. (invited speaker) (2007). Virolab: Modeling HIV from molecule to epidemiology, Edinburgh UK 14-16 March.

Sloot, P. M. A. (invited speaker) (2007). The limits of Computing, StP State Uni, 25 Jan. - 01 Feb., St Petersburg.

Sloot, P. M. A. (invited speaker) (4-12-2006). eScience in perspective, eScience Conference 2006, Amsterdam.

Sloot, P. M. A. (invited speaker) (11-11-2006). Modeling growth and form, Catholic Univ. of Daegu, Hannam University (Daejeon), Daegu, Korea.

Sloot, P. M. A. (invited speaker) (8-11-2006). Percolation in realworld networks, Int. Conf on Hybrid Information Technology, Cheju Island, Korea.

Sloot, P. M. A. (invited speaker) (9-10-2006). Time warping simulations Hangzou, DCABES, China.

Sloot, P. M. A. (invited speaker) (10-6-2006). Modeling Solid Tumor Growth with Cellular Automata, Athens ACGT, Athens.

Sloot, P. M. A. (invited speaker) (3-4-2006). Modeling Multi-Cellular Organisms with Distributed Cellular Automata, Computational Science Workshop, Krakow, Poland.

Sloot, P. M. A. (speaker) (2006). Handling Complexity (Laudation for Carl Kesselman, dr. hc.), Amsterdam 2006.

Sloot, P. M. A. (invited speaker) (2006). Mesoscopic Modeling and Simulation, GIREP2006: Modeling in Physics and Physics education: Amsterdam 20-25 Augustus, Amsterdam.

Sloot, P. M. A. (invited speaker) (2006). The fifth International Conference on Distributed Computing and Applications for business, engineering and sciences, DCABES2006, Hangzou, China.

Sloot, P. M. A. (speaker) (2006). IST Helsinki Virolab: Workshop, IST Helsinki.

Sloot, P. M. A. (invited speaker) (2006). IST Helsinki: Bridging Scales PLenair, IST Helsinki.

Sloot, P. M. A. (invited speaker) (2006). ViroLab: A Virtual Laboratory for Infectious Diseases, Cracow Grid Workshop 2006, Poland.

Sloot, P. M. A. (invited speaker) (2-12-2005). Gridbus Seminar, Melbourne University.

Sloot, P. M. A. (invited speaker) (9-11-2005). Modeling Multi-Cellular Organisms with Distributed Cellular Automata, National Grid Seminar Series, Institute for Infocomm Research, Singapore.

Sloot, P. M. A. (invited speaker) (26-10-2005). Modeling Multi-Cellular Organisms with Distributed Cellular Automata: 'Simple Computational Models for Complex Biology', Griffith University, Cold-Coast Campus, Computational Science Seminar.

Sloot, P. M. A. (invited speaker) (20-10-2005). Grid-based Virtual By-pass Surgery, Griffith University, Nathan Campus, IIIS-Seminar.

Sloot, P. M. A. (invited speaker) (2-6-2005). The Grid for complex systems simulations, Future Emerging Technologies, Brussels.

Sloot, P. M. A. (invited speaker) (10-5-2005). A Grid-based HIV Expert System, CCGrid (ioGrid05-02).

Sloot, P. M. A. (invited speaker) (21-4-2005). The Limits of Computing, AGH, University of Science and Technology, Krakow, Poland, April 21.

Sloot, P. M. A. (invited speaker) (1-3-2005). Pattern Formation and Computational Complexity, Cambridge Microsoft Research.

Sloot, P. M. A. (invited speaker) (22-2-2005). High Performance GridComputing, Iceland Express Seminars on Advanced Computer Science, University of Akureyri , Iceland.

Sloot, P. M. A. (invited speaker) (7-2-2005). Cellular Automata modelling of complex systems (Keynote Lecture), St. Petersburg State University. Workshop on Discrete Automata, Keynote Lecture.

Sloot, P. M. A. (invited speaker) (2005). Living Simulations, Simulation, Visualisation, Interaction, Mixed Reality (June 15-16 2005), Brussels.

Sloot, P. M. A. (invited speaker) (2005). Novel methods and techniques for modeling, simulation and grid-computing applied to vascular reconstruction (keynote), 3rd International Conference on Functional Imaging and Modeling of the Heart (june 2005), Barcelona.

Sloot, P. M. A. (invited speaker) (2005). Generation of Growth and Form Patterns with Cellular Automata: The curse of spatio-temporal dimensionality, NWO, Den Haag, The Netherlands, January 10.

Sloot, P. M. A. (invited speaker) (2005). Simulating Virology with Cellular Automata, Academic Hospital Utrecht, The Netherlands, January 05.

Andere

Vasconcelos, V. (organiser), Darcie Marquitti, F. (organiser), McManus, L. C. (organiser), Ong, T. W. (organiser), Krueger, E. (participant), Pascoal Dos Santos, F. (participant), Sloot, P. M. A. (participant), Liao, W. (participant), Taylor, B. (participant), Pinheiro, F. L. (participant), Junquera, V. (participant), Watson, J. (participant), Mittal, D. (participant), Yang, L. (participant), Aguiar, M. (participant), Campos, A. (participant), Dutta, P. (participant), Jovanelly, K. (participant), Kong, J. (participant), … Zhan, Q. (participant) (27-3-2022 - 1-4-2022). BIRS Workshop, Banff. The Banff International Research Station will host the "Rate-induced Transitions in Networked Systems " workshop in Banff from March 27 to April 1, (…) (organising a conference, workshop, ...). https://www.birs.ca/events/2022/5-day-workshops/22w5067

Quax, R. (organiser), Hoekstra, A. (organiser), Merelli, E. (organiser) & Sloot, P. M. A. (organiser) (18-9-2013). ECCS conferentie, Barcelona, Spanje. Information processing in complex systems (IPCS'13)All systems in nature have one thing in common: they process information. Information is (…) (organising a conference, workshop, ...). http://www.computationalscience.nl/ipcs2013/

Sloot, P. M. A. (participant) (3-10-2012). Erasmus, AGH, Krakow. The 3rd paradigm of science: Educating future scientists (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (25-6-2012). Complexity Science takes charge of viral infections, Liverpool (UK) (participating in a conference, workshop, ...). http://www.scim.brad.ac.uk/ hmibrahi/HPCC2012/

Sloot, P. M. A. (participant) (6-12-2011). Simulating Complex Societal Networks: Understanding Pandemics, Johann Bernoulli Institute for Mathematics and Computer Science, Groningen (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (21-10-2011). Simulating Agent Based Complex Networks, Singapore (participating in a conference, workshop, ...). http://app.hsc.gov.sg/public/www/home.aspx

Sloot, P. M. A. (participant) (20-6-2011). Wetenschappelijke Modellen: wat kunnen we ermee?, Amsterdam, Royal Academy of Science (participating in a conference, workshop, ...). http://www.knaw.nl/Pages/DEF/29/354.html

Sloot, P. M. A. (participant) (8-4-2011). The Computational Beauty of Life, St. Petersburg, Russia (participating in a conference, workshop, ...). http://www.nesorussia.org/home/news-events/events-archive/2011/42143543c43843d430440-the-computational-beauty-of-life-432-41c43e44143a432435

Sloot, P. M. A. (participant) (7-4-2011). NESO, Moskow, Russia. The Computational Beauty of Life (participating in a conference, workshop, ...). http://www.nesorussia.org/home/news-events/events-archive/2011/42143543c43843d430440-the-computational-beauty-of-life-432-41c43e44143a432435

Sloot, P. M. A. (participant) (14-3-2011). Complexity Science Conference, Center of Advanced Studies, NTU, Singapore. HIV incidence: Modeling the trade-off between better treatment and behavioral changes (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (26-1-2011). Multi-scale modelling of the Infectious Diseases, Imperial College London, UK (participating in a conference, workshop, ...). http://www3.imperial.ac.uk/ammp/research/mathphys/scincosy

Sloot, P. M. A. (participant) (10-10-2010). Dag van de Zelforganizatie, Rotterdam. Self-organization in Epidemics: A case of information spreading (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (31-5-2010 - 2-6-2010). International Conference on Computational Science, Amsterdam. General Chair ICCS (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). eScience 2008. Programme committee eScience 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). FIMH 2008. Programme committee FIMH 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). ICHIT 2008. Programme committee ICHIT 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). InfoScale 2008. Programme committee InfoScale 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). BioGrid 2008. Programme committee BioGrid 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). DCABES 2008. Programme committee DCABES 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). CODS 2008. Programme committee CODS 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). IPDPS 2008. Programme committee IPDPS 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). MTPP 2008. Programme committee MTPP 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). ICCS 2008. Programme committee ICCS 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). Overall Chair of the International Conference on Computational Science ICCS 2008, Krakow, Poland (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). AUTOMATA 2008. Programme committee AUTOMATA 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). CoreGrid 2008. Programme committee CoreGrid 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2008). CSIT 2008. Programme committee CSIT 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). ICCS 2007, Beijing. Overall Chair of the International Conference on Computational Science ICCS 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). ICCS 2007, Beijing. Overall Chair of the International Conference on Computational Science ICCS 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). ICCS 2007, Beijing. Overall Chair of ICCS 2008 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). Programme committee Infoscale 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). CoreGrid 2007. Programme committee CoreGrid 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). MTPP 2007. Programme committee MTPP 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). CSIT 2007. Programme committee CSIT 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). IPDPS 2007. Programme committee IPDPS 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). ICHIT 2007. Programme committee ICHIT 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). Programme committee CODS 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). ICCS 2007, Beijing. Programme committee International Conference on Computational Science 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). FIMH 2007. Programme committee FIMH 2007 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2007). IPDPS 2006. Programme committee IPDPS 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (10-7-2006). ACGT workshop on in Silico Oncology, Athens (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). 3-4 April, Krakow, Poland. Computational Science Workshop (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). ICCS 2006. Overall Chair of the International Conference on Computational Science ICCS 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). ICCS 2006, Reading. Programme committee International Conference on Computational Science 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Programme committee International Conference on Computational Science 2006, Reading, UK (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). IEEE eScience Conference 2006, Amsterdam. Overall Chair of the IEEE eScience Conference 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). IEEE Cluster 2006. Programme committee IEEE Cluster 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Programme committee ICHIT 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). CGW 2006. Cracow Grid Workshop 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). eScience 2006. Programme committee eScience 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Programme committee ICHIT 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). IEEE-PADS 2006. Programme committee IEEE-PADS 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). CCGRID 2006. Programme committee CCGRID 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Steering Committee Biogrid (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Programme committee DCABES 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Overall Chair of the International Conference on Computational Science ICCS 2006 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2006). Dagstuhl seminar on Architectures and Algorithms for Petascale Computing (Organiser) (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee European Grid Conference 2005, Amsterdam (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee IPDPS (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee CCGRID 2005 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). HiPC 2005. Programme committee HiPC 2005 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Initiator and general Chair European Grid Conference EGC 2005 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee IEEE Cluster (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee International Conference on Computational Science 2005, Atlanta (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). ICCS 2005, Atlanta. Overall Chair of the International Conference on Computational Science ICCS 2005 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee IEEE-PADS 2005 (participating in a conference, workshop, ...).

Sloot, P. M. A. (participant) (2005). Programme committee HiPC 2005 (participating in a conference, workshop, ...).
2025

Dignum, E. P. N. (2025). Computational modelling of school choice and school segregation: From theoretical to data-driven agent-based models. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Rutten, P. (2025). The movement ecology of pedestrian crowds. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2024

Hoencamp, J. H. (2024). Modern advances in computational credit risk modelling: Quantitative approaches to margin value adjustments for interest rate derivatives. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2023

Crielaard, L. (2023). Adapting to the social environment that we create together: How complexity science changes the way we understand health inequalities. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis (complete) (embargo until 12 June 2025)
Front matter
Chapter 1: Network analysis applied to causal loop diagrams may lead to false inference (embargo until 12 June 2025)
Chapter 2: Refining the causal loop diagram: A tutorial for maximising the contribution of domain expertise in computational system dynamics modelling
Chapter 3: Socioeconomic inequalities in type 2 diabetes: Mediation through status anxiety (embargo until 12 June 2025)
Chapter 4: Understanding the impact of exposure to adverse socioeconomic conditions on chronic stress from a complexity science perspective
Chapter 5: Social norms and obesity prevalence: From cohort to system dynamics models
Chapter 6: Simulations using real-world data can help communicate the complexity of childhood obesity in support of prevention targeting broader societal factors (embargo until 12 June 2025)
General discussion
Summary; Samenvatting; Portfolio; List of publications; Author contributions; Funding; Acknowledgements; About the author

Helmus, J. R. (2023). Non-linear dynamics of charging behaviour under growth stress: Data driven computational models. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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van der Zwet, K. (2023). Computational models of emergent organisation in conflict environments. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis (complete) (embargo until 04 October 2025)
Front matter
1: Introduction
2: Promises and pitfalls for computational modelling of insurgency conflicts
3: Emergence of protests during the COVID-19 pandemic: Quantitative models to explore the contributions of societal conditions
4: An agent-based model for emergent insurgent behaviour
5: Opportunistic organisation of illicit supply chains (embargo until 04 October 2025)
6: Conclusion
References; Appendix A; Appendix B; Appendix C; Summary; Samenvatting; Dankwoord; Publications

2021

Melnikov, V. (2021). Computational models of human response to urban heat: From physiology to behaviour. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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Thesis (complete)
Front matter
Chapter 1: Introduction
Chapter 2: System dynamics of human body thermal regulation in outdoor environments
Chapter 3: Models of pedestrian adaptive behaviour in hot outdoor spaces
Chapter 4: The impact of pace of life on pedestrian heat stress
Chapter 5: Empirical study and choice modelling of pedestrian sun avoidance behaviour
Chapter 6: Computational study of the performance of innate immune system response under exposure to heat stress
Chapter 7: Summary and conclusions
Publications; Bibliography; Afterword; Acknowledgements

2019

Presbitero, L. A. (2019). Understanding the human innate immune system: In-silico studies. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis (complete)
Front matter
General introduction
1: Modeling the human innate immune response for systemic inflammation
2: Evolutionary game theory and modeling the human innate immune response
3: Detecting critical transitions in the human innate immune system
4: General summary and conclusions
Acknowledgments; Journal publications; Conference proceedings; Prepared manuscript; References

Sheraton Muniraj, V. (2019). The emergence of biofilms: Computational and experimental studies. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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Thesis
Nederlandse samenvatting

2018

Abdol, A. M. (2018). Toward reverse engineering spatiotemporal gene regulatory networks of Nematostella vectensis. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Alowayyed, S. A. (2018). Patterns for multiscale computing. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2017

Har Shemesh, O. (2017). Phase transitions in complex systems: An information geometric approach. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2016

Botman, D. (2016). Spatial gene expression quantification in changing morphologies. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Javaheri, N. (2016). Biosilicification mechanisms: An investigation using computational modeling and experimentation. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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de Graaf, C. S. L. (2016). Efficient PDE based numerical estimation of credit and liquidity risk measures for realistic derivative portfolios. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2015

Mountrakis, L. (2015). Transport of blood cells studied with fully resolved models. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2014

Borgdorff, J. (2014). Distributed multiscale computing. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Cover
Title pages
Contents
1: Introduction
2: Theory of distributed multiscale computing
3: Distributed multiscale runtime environment
4: Applying distributed multiscale computing to in-stent restenosis
5: Performance of distributed multiscale computing
6: Conclusions and discussion
Bibliography
A: An algorithm for a temporal conduit filter
B: Technical details of the MUSCLE 2 runtime environment
C: Application and model details
D: Software resulting from this thesis
Summary
Samenvatting
List of publications
Acknowledgements

Erdbrink, C. D. (2014). Modelling flow-induced vibrations of gates in hydraulic structures. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Cover
Title pages
Contents
1. Introduction
2. Background
3. Physics‐based numerical modelling
4. Multi‐scale model for discharge control and flow impact
5. Physical experiment
6. Numerical simulation study of gate vibration
7. Data‐driven operation
8. Evolutionary computing for system identification
9. Inferring numerical algorithms
10. Conclusions and perspectives
References
Publications
Summary
Samenvatting
Postscript
Curriculum vitae
Korte samenvatting

Mancini, E. (2014). Agent based modeling of viral infections: an investigation across several spatio-temporal scales. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Front cover
Title pages
Table of contents
1: Introduction
2: Modeling HIV-1 intracellular replication
3: A simulation framework to investigate in vitro viral infection dynamics
4: HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: a computational study
5: In silico studies reveal two phases of sustained response of a patient’s immune system to treatment during primary HIV infection
6: Summary and conclusions
7: Discussion
Samenvatting
Acknowledgements
List of publications
Back cover

Melnikova, N. B. (2014). Finite element analysis of levee stability for flood early warning systems. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Cover
Title pages
Table of contents
Chapter 1: Introduction
Chapter 2: Principles of dike modelling
Chapter 3: Implementation, integration into decision support system and performance assessment
Chapter 4: Livedike case study: simulation and validation of the fluid sub-model
Chapter 5: Boston dike case study: simulation and validation of a coupled flow-structure interaction model under tidal loads
Chapter 6: IJkDijk case study: prediction of a dike slope failure by the Virtual Dike module
Chapter 7: Artificial intelligence system training
Chapter 8: Conclusions and directions for further research
Chapter 9: Nederlandse samenvatting
Chapter 10: Acknowledgements
Chapter 11: References
Publications by Natalia Melnikova

Pyayt, A. L. (2014). Data-driven methods in application to flood defence systems monitoring and analysis. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Front cover
Title pages
Contents
Chapter 1. Introduction
Chapter 2. Description of the monitored flood defence structures
Chapter 3. Data analysis and anomaly detection approach
Chapter 4. Results of the anomaly detection
Chapter 5. Artificial intelligence component
Chapter 6. Combination of data-driven methods and physical modelling
Chapter 7. Conclusions
Summary
Nederlandse samenvatting
Acknowledgements
Publications
Appendix A. Acronyms and abbreviations
Appendix B. Additional results of Stammer dike data analysis
Appendix C. Description of the methods
References
Back cover

2013

Quax, R. (2013). Information processing in complex networks. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Cover
Title pages
Table of contents
1: Introduction
2: The diminishing role of highly connected units in the dynamical behavior of complex systems
3: Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series
4: Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM
5: Conclusion
Appendix to Chapter 2
Appendix to Chapter 3
References
Samenvatting
Acknowledgements
List of publications

Sequeira dos Ramos Silva, P. (2013). The biocalcification of mollusk shells and coral skeletons: Integrating molecular, proteomics and bioinformatics methods. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Table of contents
Chapter 1: Introduction
Chapter 2: Novel molluskan biomineralization proteins retrieved from proteomics: A case study with Upsalin
Chapter 3: The skeletal proteome of the coral Acropora millepora: The evolution of calcification by co-option and domain shuffling
Chapter 4: Biomineralization toolkit: The importance of sample cleaning prior to the characterization of biomineral proteomes
Chapter 5: The skeleton of the staghorn coral Acropora millepora: Molecular and structural characterization
Chapter 6: Conclusions and perspectives
Appendix A
Appendix B
Appendix C
References
Samenvatting
Publications
Submitted publications
Acknowledgements

Tahir, H. (2013). Modelling and simulating the dynamics of in-stent restenosis in porcine coronary arteries. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis (complete)
Cover
Title pages
Table of contents
1: General introduction
2: Dynamics of in-stent restenosis: impact of stent deployment and design
3: Effect of a functional endothelium on the development of in-stent restenosis
4: Effect of the origin of endothelium regeneration on in-stent restenosis
5: Modelling smooth muscle cells migration in response to vascular injury using the Cellular Potts Model
6: Three dimensional in-stent restenosis model
7: Summary and challenges
Samenvatting en uitdagingen
Acknowledgements
Publications
References

Tamulonis, C. V. T. (2013). Cell-based models. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Summary
Samenvatting
1: Introduction
2: Lattice-based models
3: Lattice-free models
4: Modeling Nematostella gastrulation
5: Modeling filamentous cyanobacteria
6: Modeling reticulate biofilms
7: Conclusions
Acknowledgements
References

Tanzil, J. T. I. (2013). Environmental controls of coral growth: Data driven multi-scale analyses of rates and patterns of growth in massive Porites corals around the Thai-Malay Peninsula. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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Thesis
Front cover
Title pages
Table of contents
1: General introduction
2: Decline in growth rates of Porites lutea around Phuket, South Thailand
3: Regional decline in growth rates of massive Porites corals in Southeast Asia
4: Case study 2010: Effect of thermal bleaching on growth rates of Porites lutea around Phuket
5: Luminescent and density banding patterns in massive Porites corals
6: General conclusion and future work
Publications
References
Nederlandse samenvatting
Acknowledgements
Curriculum vitae

Zarrabi, N. (2013). Complex networks and agent-based models of HIV epidemic. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Front cover
Title pages
Contents
1: Introduction
2: Modeling HIV-1 intracellular replication
3: Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission
4: Combining social and genetic networks to study HIV transmission in mixed risk groups
5: Complex agent networks: An emerging approach for modeling complex systems
6: Summary and conclusions
Samenvatting
References
Acknowledgments
Bibliography
Back cover

van Dijk, D. (2013). The symphony of gene regulation. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Cover
Title pages
Table of contents
Chapter 1: Introduction
Chapter 2: Identifying potential survival strategies of HIV-1 hrough virus-host protein interaction networks
Chapter 3: Inference of surface membrane factors of HIV-1 infection through functional interaction networks
Chapter 4: Promoter sequence determines the relationship between expression level and noise
Chapter 5: Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
Chapter 6: Conclusions
Summary
Samenvatting
Acknowledgements
List of publications

2012

Bui, Q. C. (2012). Relation extraction methods for biomedical literature. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
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Title pages
Contents
1: Introduction
2: Relation extraction methods for biomedical text
3: Extracting causal relations on HIV drug resistance from literature
4: A hybrid approach to extract protein-protein interactions
5: A robust approach to extract biomedical events from literature
6: Discussion and conclusion
References
Summary
Samenvatting
List of publications
Acknowledgements

2011

Altıntaş, İ. (2011). Collaborative provenance for workflow-driven science and engineering. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Acknowledgements
Summary
Contents
1: Background and problem formulation
2: Scientific workflows
3: Provenance tracking for scientific data and process
4: Scientific research and collaboration environments
5: Collaborative provenance: a definition
6: Modeling and querying collaborative provenance
7: Collaborative provenance usecases
8: Collaborative provenance database implementation and evaluation
9: Addressing interoperability in collaborative provenance
10: Conclusions and future directions
List of figures
List of tables
Bibliography
Samenvatting (Dutch summary)
Publications
Curriculum vitae

Ertaylan, G. (2011). A multi-scale approach for deciphering HIV infection. [Thesis, fully internal, Universiteit van Amsterdam]. Ipskamp Drukkers B.V. [details]
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Thesis
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Title pages
Table of contents
Chapter 1: Introduction
Chapter 2: HIV decision support: from molecule to man
Chapter 3: HIV-1, human protein interaction network
Chapter 4: Surface membrane proteins of HIV-1
Chapter 5: HIV-1 coreceptor tropism
Chapter 6: Summary and conclusions
Appendix
Samenvatting
Acknowledgements
Publications

Mościcki, J. T. (2011). Understanding and mastering dynamics in computing grids: processing moldable tasks with user-level overlay. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
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Title pages
Table of contents
List of abbreviations
Chapter 1: Motivation and research objectives
Chapter 2: Dynamics of large computing grids
Chapter 3: Analysis and modeling of task processing with late binding on the Grid
Chapter 4: Development of the User-level Overlay
Chapter 5: User-level Overlay in action
Chapter 6: Capability computing case study: ITU broadcasting planning
Chapter 7: Capacity computing case study: LatticeQCD simulation
Chapter 8: Conclusions and future work
Bibliography
Summary
Nederlandse samenvatting
Streszczenie po polsku
Publications
Acknowledgments
Index

Naumov, L. A. (2011). Modelling with cellular automata: problem solving environments and multidimensional applications. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Chapter 1: Introduction
Chapter 2: Problem solving environment for cellular automata based simulations
Chapter 3: Exploring evolving 1D structures and 2D universal data indexing
Chapter 4: Modelling 3D tumour growth
Chapter 5: Summary, discussion and conclusions
Appendix A: Sample classes of structures generated by 1D binary cellular automata from a single seed
Related publications
References
Summary in English
Summary in Russian
Summary in Dutch
Acknowledgements

Qiu, G. (2011). Understanding the complex dynamics of financial markets through microsimulation. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Chapter 1: Introduction
Chapter 2: Empirical observations and limitations of traditional economic theories
Chapter 3: Modern approaches to financial modeling: heterogeneity, irrationality and interactions
Chapter 4: Understanding stock market dynamics
Chapter 5: Why do options markets smile?
Chapter 6: Effects of heterogeneous speculative strategies on the volatility smile
Chapter 7: Conclusions and future prospects
Appendix A: A detailed description of the options market model
Appendix B: Analytical solution for a special case of the options market model
Appendix C: Levels of trading activity of different speculators
Bibliography
Glossary
Publications
Summary
Samenvatting
Acknowledgements

2010

Fomekong Nanfack, Y. (2010). Genetic regulatory networks inference : modeling, parameters estimation & model validation. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
List of figures
List of tables
1: Introduction
2: Parameter estimation for biological systems
3: Hybrid (μ,λ)-ES
4: Inference of the gap gene
5: Pattern analysis
6: Gene circuit analysis
7: Perturbation analysis
8: Discussion
Appendix A
Appendix B
Publications
Bibliography
Summary
Samenvatting
Acknowledgements

Groen, D. J. (2010). High performance N-body simulation on computational grids. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
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Title pages
Contents
1: Introduction
2: Distributed direct N-body simulations on a global grid of GRAPEs
3: Living simulations: galaxy merger using direct and tree N-body integration
4: Simulating the universe on an intercontinental grid of supercomputers
5: High performance gravitational N-body simulations on a planet-wide distributed supercomputer
6: A light-weight communication library for distributed computing
7: Conclusions
Nederlandse samenvatting
Acknowledgements
List of publications
Bibliography

Lorenz, E. (2010). Multi-scale simulations with complex automata: in-stent restenosis and suspension flow. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Chapter 1: Introduction
Chapter 2: Complex automata for multi-scale modeling
Chapter 3: In-stent restenosis
Chapter 4: Suspension flow
Chapter 5: Particle clustering in shear-thickening hard-sphere suspensions
Chapter 6: Summary and conclusions
Bibliography
Samenvatting
Acknowledgements
Publications

Murtaza, S. (2010). High performance reconfigurable computing with cellular automata. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Preface
Chapter 1: Introduction
Chapter 2: Background
Chapter 3: Performance modeling of FPGA based CA implementation
Chapter 4: I/O bound CA on FPGA
Chapter 5: Compute bound CA on FPGA
Chapter 6: CA on multiple FPGA enabled PC
Chapter 7: CA on FPGA enabled PC cluster
Chapter 8: CA on advanced FPGAs
Chapter 9: Manycore paradigm: what, why and how?
Chapter 10: Summary and conclusions
Appendix
Acronyms and symbols
Bibliography
Samenvatting
Publications

van der Ham, J. J. (2010). A semantic model for complex computer networks : the network description language. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Contents
Chapter 1: Introduction
Chapter 2: Describing computer networks
Chapter 3: The network description language
Chapter 4: NDL applications
Chapter 5: Introduction to network topology aggregation
Chapter 6: Emulations of aggregated network topologies
Chapter 7: Summary and conclusion
Appendix A: Translation of OSPF to NDL
Appendix B: Translation of OSPF-TE to NDL
Appendix C: List of abbreviations
List of author's publications
Bibliography
Summary
Samenvatting
Acknowledgements
vanderHam.pdf

2009

Cui, J. (2009). Mathematical modeling of metal ion homeostasis and signaling systems. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Titlepage
Contents
Chapter 1 General introduction
Chapter 2 The 1st model for yeast calcium homeostasis
Chapter 3 Detection of a new calcium transporter on yeast plasma membrane
Chapter 4 Simulating complex calcium-calcineurin signaling networks in cardiac myocytes
Chapter 5 Simulating in vitro transcriptional response of zinc homeostasis system in E. coli
Chapter 6 Network motifs and their functions
Chapter 7 Final discussion and future work
References
Acknowledgements
Publication list

Dijkstra, F. (2009). Framework for path finding in multi-layer transport networks. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Title pages
Contents
Chapter 1: Introduction
Chapter 2: Optical exchanges
Chapter 3: Going in loops
Chapter 4: Multi-layer network model
Chapter 5: Network description language
Chapter 6: Multi-layer NDL
Chapter 7: Path finding algorithm
Chapter 8: Path finding implementation
Chapter 9: Discussion and conclusion
Appendix A: Algorithm time complexity
Bibliography
Samenvatting
Abstract
Acknowledgment
Biography
Propositions / Stellingen
Back cover

Korkhov, V. V. (2009). Hierarchical resource management in grid computing. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
Front cover
Title pages
Contents
List of abbreviations
Chapter 1: Introduction
Chapter 2: Resource management in grid computing
Chapter 3: Multi-layered applications on the grid : virtual reactor case study
Chapter 4: Parallel applications in multi-cluster environment : speedup and efficiency on the grid
Chapter 5: User-level scheduling of multi-job applications
Chapter 6: Data-driven workflow management on the grid
Chapter 7: Summary and conclusions
Publications
References
Samenvatting
Acknowledgements

Msanjila, S. S. (2009). On inter-organizational trust engineering in networked collaborations : modeling and management of rational trust. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Thesis
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Title pages
Contents
List of abbreviations
Chapter 1. Introduction and research problem analysis
Chapter 2. Aspects and characterization of trust
Chapter 3. Identification of trust elements for organizations
Chapter 4. Conceptual modeling of trust elements
Chapter 5. Mechanisms for assessing trust level of an organization
Chapter 6. Development of trust management system for VBEs
Chapter 7. Conclusion, validation, lessons learned and future work
Annex A. List of author's publications
Annex B. TrustMan validation with standard indicators and against related systems
Annex C. Empirical evaluation – questionnaire
Bibliography
Summary
Samenvatting
Acknowledgements
Back cover

Vidal Rodriguez, J. (2009). Stochasticity in signal transduction pathways. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis
Front cover
Title pages
Contents
List of figures
List of tables
Chapter 1: Introduction
Chapter 2: Gillespie Multiparticle method
Chapter 3: Noise and spatial comparisons
Chapter 4: Response time of TCSP
Chapter 5: Processivity effects in gene expression
Chapter 6: Summarising discussion
Summary
Samenvatting
Acknowledgements
Publications
References
Index

2008

Bernsdorf, J. M. (2008). Simulation of complex flows and multi-physics with the Lattice-Boltzmann method. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Gaburov, E. (2008). Stellar collisions in young star clusters. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis
Cover
Title page
Contents
1: Introduction
2: Mass segregation in star clusters
3: Mass function in the central region of the Arches cluster
4: Dynamics of the first collision in young star clusters
5: Hydrodynamics of the first collision in young star clusters
6: Mixing in massive stellar mergers
7: The evolution of runaway stellar collision products
Summary
Samenvatting
Acknowledgements
List of publications
Bibliography

Krzhizhanovskaya, V. V. (2008). A virtual reactor for simulation of plasma enhanced chemical vapor deposition. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis
Cover
Titlepage
Contents
Chapter 1 Introduction
Chapter 2 Modeling and simulation part I : 1D flow and 1D plasma discharge
Chapter 3 Modeling and simulation part II : 2D and 3D flow and 1D plasma discharge
Chapter 4 Modeling and simulation part III : 3D flow and 2/3D plasma discharge
Chapter 5 Parallelization and adaptive load balancing on the grid
Chapter 6 Problem solving environment
Chapter 7 Summary and conclusions
Chapter 8 Nederlandse samenvatting
Chapter 9 Acknowledgements
Chapter 10 Publications

2007

Axner, L. (2007). High performance computational hemodynamics with the Lattice Boltzmann method. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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Tirado Ramos, A. (2007). Collaborative software architectures for interactive biomedical applications. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Yurkin, M. A. (2007). Discrete dipole simulations of light scattering by blood cells. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2006

Gualandris, A. (2006). Simulating self-gravitating systems on parallel computers. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Rycerz, K. J. (2006). Grid-based HLA simulation support. [Thesis, externally prepared, Universiteit van Amsterdam]. [details]
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2005

Iskra, K. A. (2005). Time warp from cluster to grid. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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2004

Zhao, Z. (2004). An agent based architecture for constructing Interactive Simulation Systems. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis
Cover
Titlepage
Contents
Chapter 1 Introduction
Chapter 2 An agent based component architecture
Chapter 3 Agent based activity orchestration
Chapter 4 Implementation and performance analysis
Chapter 5 Rapid Prototyping of a surgical pre-operative planning environment
Chapter 6 Towards an intelligent planning environment for interactive simulations
Chapter 7 Summary and discussion
List of Figures
References
Nederlandse Samenvatting
Publications
Index
Acknowledgments
Cover

2003

Artoli, A. M. M. (2003). Mesoscopic Computational Haemodynamics. [Thesis, fully internal, Universiteit van Amsterdam]. Ponsen en Looijen. [details]
Downloads
Thesis
Cover
Titlepage
Contents
List of Figures
Chapter 1 Introduction
Chapter 2 Model Considerations
Chapter 3 Numerical Method
Chapter 4 Error Analysis for Steady Flow Simulations
Chapter 5 Pulsatile Flow Benchmarks
Chapter 6 Accuracy Versus Performance
Chapter 7 Optimisation Techniques
Chapter 8 The Real Thing
Chapter 9 Summary and Conclusions
Bibliography
Samenvatting
Dankwoord
Publications
Cover

Belleman, R. G. (2003). Interactive Exploration in Virtual Environments. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
Downloads
Thesis (complete)
Front cover
Title pages
Contents
Acknowledgments
Chapter 1 Interactive exploration environments
Chapter 2 Design considerations for interactive exploration environments
Chapter 3 The UvA-DRIVE virtual reality system
Chapter 4 Enabling technology for interaction in virtual environments
Chapter 5 Interactive dynamic exploration environments
Chapter 6 Integrating all: simulated vascular reconstruction in a virtual operating theatre
Chapter 7 Summary and concluding remarks
Appendix A The CAVE library
References
Samenvatting (Summary in Dutch)
Publications
Stellingen behorend bij het proefschrift
Back cover

Merks, R. M. H. (2003). Branching growth in stony corals: a modelling approach. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
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Spinnato, P. F. (2003). Hybrid Systems for N-body Simulations. [Thesis, fully internal, Universiteit van Amsterdam]. Eigen Beheer. [details]
Downloads
Thesis
Cover
Titlepage
Contents
Acknowledgments
Chapter 1 Introduction
Part I Performance Modelling and Simulation
Chapter 2 N-body Codes on Hybrid Architectures
Chapter 3 Modelling and Simulation of Hybrid Architectures
Part II Applications
Chapter 4 Pseudo-Particle Powered Treecode: Error Analysis and Optimisation
Chapter 5 The Efficiency of the Spiral-in of a Black Hole to the Galactic Centre
Part III Conclusions
Bibliography
Samenvatting
List of Publications
Cover

2000

Overeinder, B. J. (2000). Distributed Event-driven Simulation- Scheduling Strategies and Resource Management. [Thesis, fully internal, Universiteit van Amsterdam]. University of Amsterdam. [details]
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Thesis
Cover
Titlepage
Contents
Chapter 1 Introduction
Part I Scheduling Strategies
Chapter 2 Issues in Parallel Discrete Event Simulation
Chapter 3 The APSIS Time Warp Kernel
Chapter 4 APSE: Average Parallelism, Profile, and Shape Evaluation
Chapter 5 Parallel Asynchronous Cellular Automata
Chapter 6 Self-Organized Critical Behavior in Time Warp
Part II Resource Management
Chapter 7 Dynamic Load Balancing: Automatic Control of Execution Threads
Chapter 8 Summary and Conclusions
Bibliography
Publications
Dutch Summary Nederlandse Samenvatting
Nawoord
Index
Cover

1999

Kandhai, B. D. (1999). Large Scale Lattice-Boltzmann Simulations: Computational Methods and Applications. [Thesis, fully internal, vg logic/info]. Universiteit van Amsterdam. [details]
Downloads
Thesis
Cover
Titlepage
Contents
I: Introduction
I: Introduction: 1: Computer simulations in fluid dynamics
I: Introduction: 2: Theoretical background
II: Computational Methods
II: Computational Methods: 3: Boundary Conditions and checkerboard effects in Lattice-BGK models
II: Computational Methods: 4: Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations
II: Computational Methods: 5: Load Balancing in Lattice-Boltzmann Simulations
III: Validation and Applications
III: Validation and Applications: 6: Lattice-Boltzmann and Finite-Element Simulations of Fluid Flow in a SMRX Mixer
III: Validation and Applications: 7: Hydraulic Permeability of Fibrous Media
III: Validation and Applications: 8: General discussion
A: Finite-Difference Lattice-BGK Methods on Nested Grids
Bibliography
Summary
Samenvatting
Nawoord
Publications
Cover

Schoneveld, A. (1999). Parallel complex systems simulation. [Thesis, fully internal, vg logic/info]. ASCI. [details]
Downloads
Thesis
Front cover
Title pages / Stellingen
Contents
1: Introduction
2: P-CAM: A framework for parallel complex systems simulations
3: On the complexity of task allocation
4: Task allocation by parallel evolutionary computing
5: Dynamic load balancing using P-CAM
6: Asynchronous cellular automata
7: Discussion
Bibliography
Summary/Samenvatting
Nawoord
Publications

1998

Voogd, J. M. (1998). Crystallisation on a Sphere: Computational studies of two-dimensional Lennard-Jones Systems. [Thesis, fully internal, Universiteit van Amsterdam]. http://www.science.uva.nl/research/scs/papers/archive/Voogd1998a.pdf [details]
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de Ronde, J. F. (1998). Mapping in High Performance Computing - A Case Study in Finite Element Simulation. [Thesis, fully internal, Amsterdam, The Netherlands].

1994

Hoekstra, A. G. (1994). Computer Simulations of Elastic Light Scattering. [details]
1988

Sloot, P. M. A. (1988). Elastic light scattering from leukocytes in the development of computer assisted cell separation. [details]
2013

Erdbrink, C. D., Krzhizhanovskaya, V. V., & Sloot, P. M. A. (2013). Evolutionary Design of Numerical Methods: Generating Finite Difference and Integration Schemes by Differential Evolution. ArXiv. http://arxiv.org/abs/1312.7852 [details]
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1997

Sloot, P. M. A., Schoneveld, A., de Ronde, J. F., & Kaandorp, J. A. (1997). Large scale simulations of complex systems, Part I: conceptual framework. (pp. 85). (SFI Working Paper; No. 97-07-070). Santa Fe Institute for Complex studies. [details]
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2022

Brouwer, M. E., Hofstee, L., van den Brand, S., Teijema, J., Melnikov, V., de Boer, J., Lucassen, P., de Bruin, J., van Weert, J., Ferdinands, G., Kramer, B., Weijdema, F., Sloot, P. M. A., Stronks, K., van Weert, J., Wiers, R., Bockting, C. L. H. & Schoot, R. . (2022). Final data for the mega meta project. DANS Data Station Life Sciences. https://doi.org/10.17026/dans-z7w-9446

Brouwer, M. E., Hofstee, L., van den Brand, S., Teijema, J., Melnikov, V., de Boer, J., Lucassen, P., de Bruin, J., Ferdinands, G., Kramer, B., Weijdema, F., Sloot, P. M. A., Stronks, K., van Weert, J., Wiers, R., Bockting, C. & Schoot, R. . (2022). Pre-processing data for the Mega Meta Project. DANS Data Station Life Sciences. https://doi.org/10.17026/dans-29d-n6yg

2020

Lees, M., Sloot, P. M. A., Krzhizhanovskaya, V. V. & Melnikov, V. (2020). Walking speeds in relation to climate in Singapore. Mendeley Data. https://doi.org/10.17632/k5rf27hnhk.1

2019

Sloot, P. M. A., Melnikov, V. & Muniraj, V. (2019). Data for: Prediction and Quantification of Bacterial Biofilm Detachment Using Glazier-Graner-Hogeweg Method Based Model Simulations. Mendeley Data. https://doi.org/10.17632/6n9pswt7vk.1

2017

King, R., Palavalli, B., Roy, D., Menon, N., Sloot, P. M. A., Pfeffer, K. & Lees, M. (2017). Socio-economic data from slums in Bangalore, India. UK Data Archive. https://doi.org/10.5255/ukda-sn-852705
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