Prof. dr. G. (Gerard) Muijzer
Professor of Microbial Systems Ecology
Faculteit der Natuurwetenschappen, Wiskunde en Informatica
Institute for Biodiversity and Ecosystem Dynamics
Bezoekadres
- Science Park 904
- Kamernummer: C4.227
Postadres
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Postbus 94240
1090 GE Amsterdam
Contactgegevens
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Profiel
Personal website
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Publicaties
- refereed (121)
- wetenschappelijk (1)
- vakpublicatie (1)
- congresbijdragen (2)
- erkenning (1)
- datasets (22)
2024
- Aires, T., Cúcio, C., Brakel, J., Weinberger, F., Wahl, M., Teles, A., Muyzer, G., & Engelen, A. H. (2024). Impact of persistently high sea surface temperatures on the rhizobiomes of Zostera marina in a Baltic Sea benthocosms. Global Change Biology, 30(5), e17337. https://doi.org/10.1111/gcb.17337
- Bai, X., Samari-Kermani, M., Schijven, J., Raoof, A., Dinkla, I. J. T., & Muyzer, G. (2024). Enhancing slow sand filtration for safe drinking water production: interdisciplinary insights into Schmutzdecke characteristics and filtration performance in mini-scale filters. Water Research, 262, 122059. https://doi.org/10.1016/j.watres.2024.122059
- Boukheloua, R., Mukherjee, I., Park, H., Šimek, K., Kasalický, V., Ngochera, M., Grossart, H.-P., Picazo-Mozo, A., Camacho, A., Cabello-Yeves, P. J., Rodriguez-Valera, F., Callieri, C., Andrei, A.-S., Pernthaler, J., Posch, T., Alfreider, A., Sommaruga, R., Hahn, M. W., Sonntag, B., ... Ghai, R. (2024). Global freshwater distribution of Telonemia protists. The ISME Journal. Advance online publication. https://doi.org/10.1093/ismejo/wrae177
- Gupta, S., Plugge, C. M., Muyzer, G., & Sánchez-Andrea, I. (2024). Harnessing the potential of the microbial sulfur cycle for environmental biotechnology. Current Opinion in Biotechnology, 88, 103164. https://doi.org/10.1016/j.copbio.2024.103164
- Gupta, S., de Rink, R., Klok, J. B. M., Muyzer, G., & Plugge, C. M. (2024). Process conditions affect microbial diversity and activity in a haloalkaline biodesulfurization system. Applied and Environmental Microbiology, 90(1). https://doi.org/10.1128/aem.01864-23
- van Duijnhoven, H. J., Dombrowski, N., Kuperus, P., Aires, T., Coelho, M. A. G., Silva, J., Muyzer, G., & Engelen, A. H. (2024). Draft genome of the marine bacterium Alteromonas gracilis strain J4 isolated from the green coenocytic alga Caulerpa prolifera. Microbiology Resource Announcements, 13(7), e0018424. https://doi.org/10.1128/mra.00184-24
2023
- Ahn, A.-C., Schuurmans, J. M., Sorokin, D., & Muyzer, G. (2023). Dynamics of Thioalkalivibrio species in a co-culture under selective pressure of ampicillin. FEMS Microbes, 4, Article xtad020. https://doi.org/10.1093/femsmc/xtad020
- Bai, X., Dinkla, I. J. T., & Muyzer, G. (2023). Shedding light on the total and active core microbiomes in slow sand filters for drinking water production. Water Research, 243, Article 120404. https://doi.org/10.1016/j.watres.2023.120404
Diao, M., Balkema, C., Suárez-Muñoz, M., Huisman, J., & Muyzer, G. (2023). Succession of bacteria and archaea involved in the nitrogen cycle of a seasonally stratified lake. FEMS Microbiology Letters, 370, Article fnad013. https://doi.org/10.1093/femsle/fnad013 [details]- Theirlynck, T., Mendonça, I. R. W., Engelen, A. H., Bolhuis, H., Collado-Vides, L., van Tussenbroek, B. I., García-Sánchez, M., Zettler, E., Muyzer, G., & Amaral-Zettler, L. (2023). Diversity of the holopelagic Sargassum microbiome from the Great Atlantic Sargassum Belt to coastal stranding locations. Harmful Algae, 122, Article 102369. https://doi.org/10.1016/j.hal.2022.102369
2022
- Bai, X., Dinkla, I. J. T., & Muyzer, G. (2022). Microbial ecology of biofiltration used for producing safe drinking water. Applied Microbiology and Biotechnology, 106(13-16), 4813-4829. https://doi.org/10.1007/s00253-022-12013-x
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G., & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. BMC Genomics, 23, Article 674. https://doi.org/10.1186/s12864-022-08893-y [details]
- Gupta, S., Plugge, C. M., Klok, J. B. M., & Muijzer, G. (2022). Comparative analysis of microbial communities from different full‑scale haloalkaline biodesulfurization systems. Applied Microbiology and Biotechnology, 106(4), 1759–1776. https://doi.org/10.1007/s00253-022-11771-y [details]
- Hudspith, M., de Goeij, J. M., Streekstra, M., Kornder, N. A., Bougoure, J., Guagliardo, P., Campana, S., van der Wel, N. N., Muijzer, G., & Rix, L. (2022). Harnessing solar power: photoautotrophy supplements the diet of a low-light dwelling sponge. The ISME Journal, 16(9), 2076–2086. https://doi.org/10.1038/s41396-022-01254-3, https://doi.org/10.1038/s41396-022-01254-3 [details]
2021
- Ahn, A.-C., Jongepier, E., Schuurmans, J. M., Rijpstra, W. I. C., Sinninghe Damsté, J. S., Galinski, E. A., Roman, P., Sorokin, D., & Muyzer, G. (2021). Molecular and Physiological Adaptations to Low Temperature in Thioalkalivibrio Strains Isolated from Soda Lakes with Different Temperature Regimes. mSystems, 6(2), Article e01202-20. https://doi.org/10.1128/mSystems.01202-20 [details]
- Aires, T., Stuij, T. M., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2021). Characterization and Comparison of Bacterial Communities of an Invasive and Two Native Caribbean Seagrass Species Sheds Light on the Possible Influence of the Microbiome on Invasive Mechanisms. Frontiers in Microbiology, 12, Article 653998. https://doi.org/10.3389/fmicb.2021.653998
- Campana, S., Busch, K., Hentschel, U., Muijzer, G., & de Goeij, J. M. (2021). DNA-stable isotope probing (DNA-SIP) identifies marine sponge-associated bacteria actively utilizing dissolved organic matter (DOM). Environmental Microbiology, 23(8), 4489-4504. https://doi.org/10.1111/1462-2920.15642 [details]
- Campana, S., Demey, C., Busch, K., Hentschel, U., Muijzer, G., & de Goeij, J. M. (2021). Marine sponges maintain stable bacterial communities between reef sites with different coral to algae cover ratios. FEMS Microbiology Ecology, 97(9), Article fiab115. https://doi.org/10.1093/femsec/fiab115 [details]
- Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M., & de Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: Insights into the ecological success of an early metazoan–microbe symbiosis. Microbiome, 9, Article 44. https://doi.org/10.1186/s40168-020-00984-w [details]
- IMG/M Data Consortium (2021). Author Correction: A genomic catalog of Earth’s microbiomes. Nature Biotechnology, 39(4), 521. https://doi.org/10.1038/s41587-021-00898-4
- IMG/M Data Consortium, Nayfach, S., & Muyzer, G. (2021). A genomic catalog of Earth’s microbiomes. Nature Biotechnology, 39(4), 499-509. https://doi.org/10.1038/s41587-020-0718-6
- Piel, T., Sandrini, G., Muyzer, G., Brussaard, C. P. D., Slot, P. C., van Herk, M. J., Huisman, J., & Visser, P. M. (2021). Resilience of microbial communities after hydrogen peroxide treatment of a eutrophic lake to suppress harmful cyanobacterial blooms. Microorganisms, 9(7), Article 1495. https://doi.org/10.3390/microorganisms9071495 [details]
- Sevink, J., Muijzer, G., Arienzo, I., Mormone, A., Piochi, M., Alessandri, L., van Hall, R. L., Palstra, S. W. L., & Dee, M. W. (2021). The protohistoric briquetage at Puntone (Tuscany, Italy): A multidisciplinary attempt to unravel its age and role in the salt supply of Early States in Tyrrhenian Central Italy. Journal of Archaeological Science: Reports, 38, Article 103055. https://doi.org/10.1016/j.jasrep.2021.103055 [details]
2020
- Popall, R. M., Bolhuis, H., Muyzer, G., & Sánchez-Román, M. (2020). Stromatolites as Biosignatures of Atmospheric Oxygenation: Carbonate Biomineralization and UV-C Resilience in a Geitlerinema sp. - Dominated Culture. Frontiers in Microbiology, 11, Article 948. https://doi.org/10.3389/fmicb.2020.00948 [details]
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I., & Popov, V. O. (2020). Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America, 117(10), 5280-5290. https://doi.org/10.1073/pnas.1922133117 [details]
- Tüccar, T., Ilhan-Sungur, E., & Muyzer, G. (2020). Bacterial community composition in produced water of Diyarbakır oil fields in Turkey Bacterial communities in produced waters of south-eastern Turkey reported in detail for the first time. Johnson Matthey Technology Review, 64(4), 452-465. https://doi.org/10.1595/205651320X15911723486216 [details]
2019
- Ahn, A.-C., Cavalca, L., Colombo, M., Schuurmans, J. M., Sorokin, D. Y., & Muyzer, G. (2019). Transcriptomic Analysis of Two Thioalkalivibrio Species Under Arsenite Stress Revealed a Potential Candidate Gene for an Alternative Arsenite Oxidation Pathway. Frontiers in Microbiology, 10, Article 1514. https://doi.org/10.3389/fmicb.2019.01514 [details]
- Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2019). Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads. Frontiers in Microbiology, 9, Article 3283. https://doi.org/10.3389/fmicb.2018.03283 [details]
- Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2019). Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Frontiers in Microbiology, 10, Article 160. https://doi.org/10.3389/fmicb.2019.00160 [details]
- Borrel, G., Adam, P. S., McKay, L. J., Chen, L.-X., Sierra-García, I. N., Sieber, C. M. K., Letourneur, Q., Ghozlane, A., Andersen, G. L., Li, W.-J., Hallam, S. J., Muyzer, G., de Oliveira, V. M., Inskeep, W. P., Banfield, J. F., & Gribaldo, S. (2019). Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nature Microbiology, 4(4), 603-613. https://doi.org/10.1038/s41564-019-0363-3 [details]
- Cavalca, L., Zecchin, S., Zaccheo, P., Abbas, B., Rotiroti, M., Bonomi, T., & Muyzer, G. (2019). Exploring Biodiversity and Arsenic Metabolism of Microbiota Inhabiting Arsenic-Rich Groundwaters in Northern Italy. Frontiers in Microbiology, 10, Article 1480. https://doi.org/10.3389/fmicb.2019.01480 [details]
- Stouten, G. R., Hogendoorn, C., Douwenga, S., Kilias, E. S., Muyzer, G., & Kleerebezem, R. (2019). Temperature as competitive strategy determining factor in pulse-fed aerobic bioreactors. The ISME Journal, 13(12), 3112-3125. https://doi.org/10.1038/s41396-019-0495-8 [details]
- Tsallagov, S. I., Sorokin, D. Y., Tikhonova, T. V., Popov, V. O., & Muyzer, G. (2019). Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. Frontiers in Microbiology, 10, Article 898. https://doi.org/10.3389/fmicb.2019.00898 [details]
- Tüccar, T., Ilhan-Sungur, E., Abbas, B., & Muyzer, G. (2019). Coexistence of sulfate reducers with the other oil bacterial groups in Diyarbakır oil fields. Anaerobe, 59, 19-31. https://doi.org/10.1016/j.anaerobe.2019.04.008 [details]
- Vavourakis, C. D., Mehrshad, M., Balkema, C., van Hall, R., Andrei, A. .-Ş., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2019). Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. BMC Biology, 17, Article 69. https://doi.org/10.1186/s12915-019-0688-7 [details]
2018
- Aires, T., Muyzer, G., Serrão, E. A., & Engelen, A. H. (2018). Unraveling seaweeds bacteriomes: From field site to computer screen. In B. Charrier, T. Wichard, & C. R. K. Reddy (Eds.), Protocols for Macroalgae Research (pp. 95-113). CRC Press. https://doi.org/10.1201/b21460-5 [details]
- Cúcio, C., Overmars, L., Engelen, A. H., & Muyzer, G. (2018). Metagenomic Analysis Shows the Presence of Bacteria Related to Free-Living Forms of Sulfur-Oxidizing Chemolithoautotrophic Symbionts in the Rhizosphere of the Seagrass Zostera marina. Frontiers in Marine Science, 5, Article 171. https://doi.org/10.3389/fmars.2018.00171 [details]
- Diao, M., Huisman, J., & Muyzer, G. (2018). Spatio-temporal dynamics of sulfur bacteria during oxic-anoxic regime shifts in a seasonally stratified lake. FEMS Microbiology Ecology, 94(4), Article fiy040. https://doi.org/10.1093/femsec/fiy040 [details]
- Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., Sorokin, D. Y., & Plugge, C. M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Frontiers in Microbiology, 9, Article 3039. https://doi.org/10.3389/fmicb.2018.03039 [details]
- Vavourakis, C. D., Andrei, A.-S., Mehrshad, M., Ghai, R., Sorokin, D. Y., & Muyzer, G. (2018). A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Microbiome, 6, Article 168. https://doi.org/10.1186/s40168-018-0548-7 [details]
2017
- Ahn, A.-C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. Y., & Muyzer, G. (2017). Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS ONE, 12(3), Article e0173517. https://doi.org/10.1371/journal.pone.0173517 [details]
- Berben, T., Balkema, C., Sorokin, D. Y., & Muyzer, G. (2017). Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics. mSystems, 2(6), Article e00102-17. https://doi.org/10.1128/mSystems.00102-17 [details]
- Berben, T., Overmars, L., Sorokin, D. Y., & Muyzer, G. (2017). Comparative genome analysis of three thiocyanate oxidizing Thioalkalivibrio species isolated from soda lakes. Frontiers in Microbiology, 8, Article 254. https://doi.org/10.3389/fmicb.2017.00254 [details]
- Bush, T., Diao, M., Allen, R. J., Sinnige, R., Muijzer, G., & Huisman, J. (2017). Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics. Nature Communications, 8, Article 789. https://doi.org/10.1038/s41467-017-00912-x [details]
- Diao, M., Sinnige, R., Kalbitz, K., Huisman, J., & Muyzer, G. (2017). Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic Hypolimnion. Frontiers in Microbiology, 8, Article 2511. https://doi.org/10.3389/fmicb.2017.02511 [details]
- Erol, Ö., Arends, I. W. C. E., & Muyzer, G. (2017). Discovery of Putative Halogenases in Environmental Samples Using Metagenomics. Current Biotechnology, 6(1), 17-25. https://doi.org/10.2174/2211550105666160930115934 [details]
- Ilhan-Sungur, E., Ozuolmez, D., Çotuk, A., Cansever, N., & Muyzer, G. (2017). Isolation of a sulfide-producing bacterial consortium from cooling-tower water: Evaluation of corrosive effects on galvanized steel. Anaerobe, 43, 27-34. https://doi.org/10.1016/j.anaerobe.2016.11.005 [details]
- Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., del Rio, T. G., Kyrpides, N. C., Woyke, T., & Muyzer, G. (2017). Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. Standards in Genomic Sciences, 12, Article 57. https://doi.org/10.1186/s40793-017-0268-9 [details]
2016
- Belila, A., El-Chakhtoura, J., Otaibi, N., Muyzer, G., Gonzalez-Gil, G., Saikaly, P. E., van Loosdrecht, M. C. M., & Vrouwenvelder, J. S. (2016). Bacterial community structure and variation in a full-scale seawater desalination plant for drinking water production. Water Research, 94, 62-72. https://doi.org/10.1016/j.watres.2016.02.039 [details]
- Cúcio, C., Engelen, A. H., Costa, R., & Muyzer, G. (2016). Rhizosphere microbiomes of European seagrasses are selected by the plant, but are not species specific. Frontiers in Microbiology, 7, Article 440. https://doi.org/10.3389/fmicb.2016.00440 [details]
- Melton, E. D., Sorokin, D. Y., Overmars, L., Chertkov, O., Clum, A., Pillay, M., Ivanova, N., Shapiro, N., Kyrpides, N. C., Woyke, T., Lapidus, A. L., & Muyzer, G. (2016). Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Standards in Genomic Sciences, 11, Article 67. https://doi.org/10.1186/s40793-016-0184-4 [details]
- Muijzer, G. (2016). Marine Microbial Systems Ecology: Microbial Networks in the Sea. In L. J. Stal, & M. S. Cretoiu (Eds.), The Marine Microbiome: An Untapped Source of Biodiversity and Biotechnological Potential (pp. 335-344). Springer. https://doi.org/10.1007/978-3-319-33000-6_12 [details]
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D. Y., Tringe, S. G., Hugenholtz, P., & Muyzer, G. (2016). Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Frontiers in Microbiology, 7, Article 211. https://doi.org/10.3389/fmicb.2016.00211 [details]
2015
- Bassin, J. P., Abbas, B., Vilela, C. L. S., Kleerebezem, R., Muyzer, G., Rosado, A. S., van Loosdrecht, M. C. M., & Dezotti, M. (2015). Tracking the dynamics of heterotrophs and nitrifiers in moving-bed biofilm reactors operated at different COD/N ratios. Bioresource Technology, 192, 131-141. https://doi.org/10.1016/j.biortech.2015.05.051 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., Woyke, T., & Muyzer, G. (2015). Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. Standards in Genomic Sciences, 10, Article 105. https://doi.org/10.1186/s40793-015-0097-7 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., Woyke, T., & Muyzer, G. (2015). Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification. Standards in Genomic Sciences, 10, Article 84. https://doi.org/10.1186/s40793-015-0080-3 [details]
- Berben, T., Sorokin, D. Y., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., Woyke, T., & Muyzer, G. (2015). Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T. Standards in Genomic Sciences, 10, Article 85. https://doi.org/10.1186/s40793-015-0078-x [details]
- Corsini, A., Colombo, M., Muyzer, G., & Cavalca, L. (2015). Characterization of the arsenite oxidizer Aliihoeflea sp. strain 2WW and its potential application in the removal of arsenic from groundwater in combination with Pf-ferritin. Antonie van Leeuwenhoek, 108(3), 673-684. https://doi.org/10.1007/s10482-015-0523-2 [details]
- Muntyan, M. S., Cherepanov, D. A., Malinen, A. M., Bloch, D. A., Sorokin, D. Y., Severina, I. I., Ivashina, T. V., Lahti, R., Muyzer, G., & Skulachev, V. P. (2015). Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase. Proceedings of the National Academy of Sciences of the United States of America, 112(25), 7695-7700. https://doi.org/10.1073/pnas.1417071112 [details]
- Sorokin, D. Y., Banciu, H. L., & Muyzer, G. (2015). Functional microbiology of soda lakes. Current opinion in microbiology, 25, 88-96. https://doi.org/10.1016/j.mib.2015.05.004 [details]
2014
- Corsini, A., Cavalca, L., Muyzer, G., & Zaccheo, P. (2014). Effectiveness of various sorbents and biological oxidation in the removal of arsenic species from groundwater. Environmental Chemistry, 11(5), 558-565. https://doi.org/10.1071/EN13210 [details]
- Corsini, A., Zaccheo, P., Muyzer, G., Andreoni, V., & Cavalca, L. (2014). Arsenic transforming abilities of groundwater bacteria and the combined use of Aliihoeflea sp. strain 2WW and goethite in metalloid removal. Journal of Hazardous Materials, 269, 89-97. https://doi.org/10.1016/j.jhazmat.2013.12.037 [details]
- Kuever, J., Visser, M., Loeffler, C., Boll, M., Worm, P., Sousa, D. Z., Plugge, C. M., Schaap, P. J., Muyzer, G., Pereira, I. A. C., Parshina, S. N., Goodwin, L. A., Kyrpides, N. C., Detter, J., Woyke, T., Chain, P., Davenport, K. W., Rohde, M., Spring, S., ... Stams, A. J. M. (2014). Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium. Standards in Genomic Sciences, 9(3), 821-839. https://doi.org/10.4056/sigs.5209235 [details]
- Marty, F., Gueuné, H., Malard, E., Sánchez-Amaya, J. M., Sjögren, L., Abbas, B., Quillet, L., van Loosdrecht, M. C. M., & Muyzer, G. (2014). Identification of key factors in Accelerated Low Water Corrosion through experimental simulation of tidal conditions: influence of stimulated indigenous microbiota. BIOFOULING, 30(3), 281-297. https://doi.org/10.1080/08927014.2013.864758 [details]
- Marty, F., van Loosdrecht, M., & Muyzer, G. (2014). Molecular Characterization of Microbial Communities Associated with Accelerated Low-water Corrosion (ALWC) on European Harbour Structures. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 55-67). Caister Academic Press. http://www.horizonpress.com/ammm [details]
- Muyzer, G., & Marty, F. (2014). Molecular Methods in Microbiologically Influenced Corrosion Research, Monitoring and Control. In T. L. Skovhus, S. M. Caffrey, & C. R. J. Hubert (Eds.), Applications of molecular microbiological methods (pp. 7-22). Caister Academic Press. http://www.horizonpress.com/ammm [details]
- Oueriaghli, N., González-Domenech, C. M., Martínez-Checa, F., Muyzer, G., Ventosa, A., Quesada, E., & Béjar, V. (2014). Diversity and distribution of Halomonas in Rambla Salada, a hypersaline environment in the southeast of Spain. FEMS Microbiology Ecology, 87(2), 460-474. https://doi.org/10.1111/1574-6941.12237 [details]
- Sandrini, G., Matthijs, H. C. P., Verspagen, J. M. H., Muyzer, G., & Huisman, J. (2014). Genetic diversity of inorganic carbon uptake systems causes variation in CO2 response of the cyanobacterium Microcystis. The ISME Journal, 8, 589-600. https://doi.org/10.1038/ismej.2013.179 [details]
- Sorokin, D. Y., Abbas, B., Tourova, T. P., Bumazhkin, B. K., Kolganova, T. V., & Muyzer, G. (2014). Sulfate-dependent acetate oxidation under extremely natron-alkaline conditions by syntrophic associations from hypersaline soda lakes. Microbiology (United Kingdom), 160(4), 723-732. https://doi.org/10.1099/mic.0.075093-0 [details]
- Sorokin, D. Y., Berben, T., Melton, E. D., Overmars, L., Vavourakis, C. D., & Muyzer, G. (2014). Microbial diversity and biogeochemical cycling in soda lakes. Extremophiles, 18(5), 791-809. https://doi.org/10.1007/s00792-014-0670-9 [details]
- Sorokin, D. Y., Gumerov, V. M., Rakitin, A. L., Beletsky, A. V., Sinninghe Damsté, J. S., Muyzer, G., Mardanov, A. V., & Ravin, N. V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environmental Microbiology, 16(6), 1549-1565. https://doi.org/10.1111/1462-2920.12284 [details]
- Sorokin, D. Y., Vejmelkova, D., Lücker, S., Streshinskaya, G. M., Rijpstra, W. I. C., Sinninghe Damste, J. S., Kleerbezem, R., van Loosdrecht, M., Muyzer, G., & Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. International Journal of Systematic and Evolutionary Microbiology, 64(6), 1859-1865. https://doi.org/10.1099/ijs.0.062232-0 [details]
- Suzuki, S., Kuenen, J. G., Schipper, K., van der Velde, S., Ishii, S., Wu, A., Sorokin, D. Y., Tenney, A., Meng, X. Y., Morrill, P. L., Kamagata, Y., Muyzer, G., & Nealson, K. H. (2014). Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site. Nature Communications, 5, 3900. https://doi.org/10.1038/ncomms4900 [details]
- Visser, M., Parshina, S. N., Alves, J. I., Sousa, D. Z., Pereira, I. A. C., Muyzer, G., Kuever, J., Lebedinsky, A. V., Koehorst, J. J., Worm, P., Plugge, C. M., Schaap, P. J., Goodwin, L. A., Lapidus, A., Kyrpides, N. C., Detter, J. C., Woyke, T., Chain, P., Davenport, K. W., ... Stams, A. J. M. (2014). Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans. Standards in Genomic Sciences, 9(3), 655-675. https://doi.org/10.4056/sigs.4718645 [details]
2013
- Belila, A., Abbas, B., Fazaa, I., Saidi, N., Snoussi, M., Hassen, A., & Muyzer, G. (2013). Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon. Applied Microbiology and Biotechnology, 97(1), 379-394. https://doi.org/10.1007/s00253-012-3931-5 [details]
- Besaury, L., Marty, F., Buquet, S., Mesnage, V., Muijzer, G., & Quillet, L. (2013). Culture-Dependent and Independent Studies of Microbial Diversity in Highly Copper-Contaminated Chilean Marine Sediments. Microbial Ecology, 65(2), 311-324. https://doi.org/10.1007/s00248-012-0120-0 [details]
- Cavalca, L., Corsini, A., Andreoni, V., & Muyzer, G. (2013). Draft genome sequence of the arsenite-oxidizing strain Aliihoeflea sp. 2WW, isolated from arsenic-contaminated groundwater. Genome Announcements, 1(6), e1072-13. https://doi.org/10.1128/genomeA.01072-13 [details]
- Cavalca, L., Corsini, A., Zaccheo, P., Andreoni, V., & Muyzer, G. (2013). Microbial transformations of arsenic: perspectives for biological removal of arsenic from water. Future Microbiology, 8(6), 753-768. https://doi.org/10.2217/FMB.13.38 [details]
- Chen, B. S., Otten, L. G., Resch, V., Muyzer, G., & Hanefeld, U. (2013). Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. Standards in Genomic Sciences, 9(1), 175-184. https://doi.org/10.4056/sigs.4418165 [details]
- Muyzer, G., Kuenen, J. G., & Robertson, L. A. (2013). Colorless Sulfur Bacteria. In E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes: Prokaryotic Physiology and Biochemistry (pp. 555-588). Springer. https://doi.org/10.1007/978-3-642-30141-4_78 [details]
- Païssé, S., Ghiglione, J.-F., Marty, F., Abbas, B., Gueuné, H., Sanchez Amaya, J., Muyzer, G., & Quillet, L. (2013). Sulfate-reducing bacteria inhabiting natural corrosion depostis from marine steel structures. Applied Microbiology and Biotechnology, 97(16), 7493-7504. https://doi.org/10.1007/s00253-012-4464-7 [details]
- Sorokin, D. Y., Banciu, H., Robertson, L. A., Kuenen, J. G., Muntyan, M. S., & Muyzer, G. (2013). Halophilic and haloalkaliphilic sulfur-oxidizing bacteria. In E. Rosenberg, F. DeLong, E. Delong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The Prokaryotes : Prokaryotic Physiology and Biochemistry (pp. 529-554). Springer. https://doi.org/10.1007/978-3-642-30141-4_77 [details]
- Sorokin, D. Y., Tourova, T. P., & Muyzer, G. (2013). Isolation and characterization of two novel alkalitolerant sulfidogens from a Thiopaq bioreactor, Desulfonatronum alkalitolerans sp. nov., and Sulfurospirillum alkalitolerans sp. nov. Extremophiles, 17(3), 535-543. https://doi.org/10.1007/s00792-013-0538-4 [details]
- Tourova, T. P., Slobodova, N. V., Bumazhkin, B. K., Kolganova, T. V., Muijzer, G., & Sorokin, D. Y. (2013). Analysis of community composition of sulfur-oxidizing bacteria in hypersaline and soda lakes using soxB as a functional molecular marker. FEMS Microbiology Ecology, 84(2), 280-289. https://doi.org/10.1111/1574-6941.12056 [details]
- Visser, M., Worm, P., Muyzer, G., Pereira, I. A. C., Schaap, P. J., Plugge, C. M., Kuever, J., Parshina, S. N., Nazina, T. N., Ivanova, A. E., Bernier-Latmani, R., Goodwin, L. A., Kyrpides, N. C., Woyke, T., Chain, P., Davenport, K. W., Spring, S., Klenk, H.-P., & Stams, A. J. M. (2013). Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum strain SIT. Standards in Genomic Sciences, 8(1), 69-87. https://doi.org/10.4056/sigs.3627141 [details]
- Vissers, E. W., Anselmetti, F. S., Bodelier, P. L. E., Muyzer, G., Schleper, C., Tourna, M., & Laanbroek, H. J. (2013). Temporal and spatial coexistence of archaeal and bacterial amoA genes and gen transcripts in Lake Lucerne. Archaea, 2013, 289478. https://doi.org/10.1155/2013/289478 [details]
- Vissers, E. W., Blaga, C. I., Bodelier, P. L. E., Muyzer, G., Schleper, C., Sinninghe Damsté, J. S., Tourna, M., & Laanbroek, H. J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiology Ecology, 83(2), 515-526. https://doi.org/10.1111/1574-6941.12013 [details]
2012
- Bassin, J. P., Kleerebezem, R., Muyzer, G., Rosado, A. S., Van Loosdrecht, M. C. M., & Dezotti, M. (2012). Effect of different salt adaptation strategies on the microbial diversity, activity, and settling of nitrifying sludge in sequencing batch reactors. Applied Microbiology and Biotechnology, 93(3), 1281-1294. https://doi.org/10.1007/s00253-011-3428-7
- Marty, F., Ghiglione, J.-F., Païssé, S., Gueuné, H., Quillet, L., van Loosdrecht, M. C. M., & Muyzer, G. (2012). Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corrored steel. BIOFOULING, 28(4), 363-380. https://doi.org/10.1080/08927014.2012.672644 [details]
- Sorokin, D. Y., Janssen, A. J. H., & Muyzer, G. (2012). Biodegradation potential of halo(Alkali)philic prokaryotes. Critical Reviews in Environmental Science and Technology, 42(8), 811-856. https://doi.org/10.1080/10643389.2010.534037
- Sorokin, D. Y., Lücker, S., Vejmelkova, D., Kostrikina, N. A., Kleerebezem, R., Rijpstra, W. I. C., Sinnenghe Damsté, J. S., Le Paslier, D., Muyzer, G., Wagner, M., van Loosdrecht, M. C. M., & Daims, H. (2012). Nitrification expanded: discovery, physiology, and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexii. The ISME Journal, 6(12), 2245-2256. https://doi.org/10.1038/ismej.2012.70 [details]
- Sorokin, D. Y., Muntyan, M. S., Panteleeva, A. N., & Muyzer, G. (2012). Thioalkalivibrio sulfidophilus sp. nov., a haloalkaliphilic sulfur-oxidizing gammaproteobacterium from alklaine habitats. International Journal of Systematic and Evolutionary Microbiology, 62(8), 1884-1889. https://doi.org/10.1099/ijs.0.034504-0 [details]
- Sorokin, D. Y., Tourova, T. P., Abbas, B., Suhacheva, M. V., & Muyzer, G. (2012). Desulfonatronovibrio halophilus sp. nov., a novel moderately halophilic sulfate-reducing bacterium from hypersaline chloride-sulfate lakes in Central Asia. Extremophiles, 16(3), 411-417. https://doi.org/10.1007/s00792-012-0440-5 [details]
- Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Desulfonatronobacter acidivorans gen. nov., sp. nov., and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes. International Journal of Systematic and Evolutionary Microbiology, 62(9), 2107-2113. https://doi.org/10.1099/ijs.0.029777-0 [details]
- Sorokin, D. Y., Tourova, T. P., Panteleeva, A. N., Kaparullina, E. N., & Muyzer, G. (2012). Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes. Extremophiles, 16(2), 307-315. https://doi.org/10.1007/s00792-012-0431-6 [details]
- Sorokin, D. Y., Tourova, T. P., Sukhacheva, M. V., & Muyzer, G. (2012). Desulfuribacillus alkaliarsenatis gen. nov., sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes. Extremophiles, 16(4), 597-605. https://doi.org/10.1007/s00792-012-0459-7 [details]
- Sorokin, D. Y., Zacharova, E. E., Pimenov, N. V., Tourova, T. P., Panteleeva, A. N., & Muyzer, G. (2012). Sulfidogenesis in hypersaline chloride-sulfate lakes of Kulunda Steppe (Altai, Russia). FEMS Microbiology Ecology, 79(2), 445-453. https://doi.org/10.1111/j.1574-6941.2011.01228.x [details]
- Spring, S., Visser, M., Lu, M., Copeland, A., Lapidus, A., Lucas, S., Cheng, J. F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Ivanova, N., Land, M., Hauser, L., Larimer, F., Rohde, M., Göker, M., Detter, J. C., Kyrpides, N. C., ... Klenk, H. P. (2012). Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT). Standards in Genomic Sciences, 7(2), 304-319. https://doi.org/10.4056/sigs.3226659
- Vejmelkova, D., Sorokin, D. Y., Abbas, B., Kovaleva, O. L., Kleerebezem, R., Kampschreur, M. J., Muyzer, G., & van Loosdrecht, M. C. M. (2012). Analysis of ammonia-oxidizing bacteria dominating in lab-scale bioreactors with high ammonium bicarbonate loading. Applied Microbiology and Biotechnology, 93(1), 401-410. https://doi.org/10.1007/s00253-011-3409-x [details]
- Wang, J., Krause, S., Muyzer, G., Meima-Franke, M., Laanbroek, H. J., & Bodelier, P. L. E. (2012). Spatial patterns of iron- and methane-oxidizing bacterial communities in an irregularly flooded, riparian wetland. Frontiers in Microbiology, 3, 64. Article 64. https://doi.org/10.3389/fmicb.2012.00064 [details]
- de Graaff, M., Klok, J. B. M., Bijmans, M. F. M., Muyzer, G., & Janssen, A. J. H. (2012). Application of a 2-step process for the biological treatment of sulfidic spent caustics. Water Research, 46(3), 723-730. https://doi.org/10.1016/j.watres.2011.11.044 [details]
2011
- Bassin, J. P., Pronk, M., Muijzer, G., Kleerebezem, R., Dezotti, M., & van Loosdrecht, M. C. M. (2011). Effect of elevated salt concentrations on the aerobic granular sludge process: linking microbial activity with microbial community structure. Applied and Environmental Microbiology, 77(22), 7942-7953. https://doi.org/10.1128/AEM.05016-11
- Jiang, Y., Hebly, M., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Metabolic modeling of mixed substrate uptake for polyhydroxyalkanoate (PHA) production. Water Research, 45(3), 1309-1321. https://doi.org/10.1016/j.watres.2010.10.009 [details]
- Jiang, Y., Marang, L., Kleerebezem, R., Muijzer, G., & van Loosdrecht, M. C. M. (2011). Polyhydroxybutyrate production from lactate using a mixed microbial culture. Biotechnology and Bioengineering, 108(9), 2022-2035. https://doi.org/10.1002/bit.23148 [details]
- Jiang, Y., Marang, L., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. C. M. (2011). Effect of temperature and cycle length on microbial competition in PHB-producing sequencing batch reactor. The ISME Journal, 5(5), 896-907. https://doi.org/10.1038/ismej.2010.174 [details]
- Jiang, Y., Sorokin, D. Y., Kleerebezem, R., Muyzer, G., & van Loosdrecht, M. (2011). Plasticicumulans acidivorans gen. nov., sp nov., a polyhydroxyalkanoate-accumulating gammaproteobacterium from a sequencing-batch bioreactor. International Journal of Systematic and Evolutionary Microbiology, 61(9), 2314-2319. https://doi.org/10.1099/ijs.0.021410-0 [details]
- Kovaleva, O. L., Tourova, T. P., Muyzer, G., Kolganova, T. V., & Sorokin, D. Y. (2011). Diversity of RuBisCO and ATP citrate lyase genes in soda lake sediments. FEMS Microbiology Ecology, 75(1), 37-47. https://doi.org/10.1111/j.1574-6941.2010.00996.x [details]
- Muijzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Foster, B., Sun, H., Ivanova, N., Pati, A., D’Haeseleer, P., Woyke, T., & Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sp. K90mix. Standards in Genomic Sciences, 5(3), 341-355. https://doi.org/10.4056/sigs.2315092 [details]
- Muyzer, G., & Sorokin, D. Y. (2011). Molecular mechanisms of adaptation to pH stress in microorganisms. In S. Casella (Ed.), Microbial diversity 2011: environmental stress and adaptation., MD 2011: proceedings of the First International Conference on Micro Diversity 2011 - environmental stress and adaption, MD 2011, 26 - 28 October 2011, Milan, Italy (pp. 27-32). Società Italiana di Microbiologia Agro-Alimentare e Ambientale. [details]
- Muyzer, G., Sorokin, D. Y., Mavromatis, K., Lapidus, A., Clum, A., Ivanova, N., Pati, A., d' Haeseleer, P., Woyke, T., & Kyrpides, N. C. (2011). Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7. Standards in Genomic Sciences, 4(1), 23-35. https://doi.org/10.4056/sigs.1483693 [details]
- Sorokin, D. Y., Detkova, E. N., & Muijzer, G. (2011). Sulfur-dependent respiration under extremely haloalkaline conditions in soda lake ‘acetogens’ and the description of Natroniella sulfidigena sp. nov. FEMS Microbiology Letters, 319(1), 88-95. https://doi.org/10.1111/j.1574-6968.2011.02272.x [details]
- Sorokin, D. Y., Kuenen, J. G., & Muijzer, G. (2011). The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes. Frontiers in Microbiology, 2, Article 44. https://doi.org/10.3389/fmicb.2011.00044 [details]
- Sorokin, D. Y., Panteleeva, A. N., Tourova, T. P., Kaparullina, E. N., & Muijzer, G. (2011). Natronoflexus pectinivorans gen. nov. sp. nov., an obligately anaerobic and alkaliphilic fermentative member of Bacteroidetes from soda lakes. Extremophiles, 15(6), 691-696. https://doi.org/10.1007/s00792-011-0399-7 [details]
- Sorokin, D. Y., Tourova, T. P., Kolganova, T. V., Detkova, E. N., Galinski, E. A., & Muyzer, G. (2011). Culturable diversity of lithotrophic haloalkaliphilic sulfate-reducing bacteria in soda lakes and the description of Desulfonatronum thioautotrophicum sp. nov., Desulfonatronum thiosulfatophilum sp. nov., Desulfonatronovibrio thiodismutans sp. nov., and Desulfonatronovibrio magnus sp. nov. Extremophiles, 15(3), 391-401. https://doi.org/10.1007/s00792-011-0370-7 [details]
- Wang, J., Vollrath, S., Behrends, T., Bodelier, P. L. E., Muyzer, G., Meima-Franke, M., den Oudsten, F., van Cappellen, P., & Laanbroek, H. J. (2011). Distribution and diversity of Gallionella-like neutrophilic iron oxidizers in a tidal freshwater marsh. Applied and Environmental Microbiology, 77(7), 2337-2344. https://doi.org/10.1128/AEM.02448-10 [details]
- de Graaff, M., Bijmans, M. F. M., Abbas, B., Euverink, G. J. W., Muijzer, G., & Janssen, A. J. H. (2011). Biological treatment of refinery spent caustics under halo-alkaline conditions. Bioresource Technology, 102(15), 7257-7264. https://doi.org/10.1016/j.biortech.2011.04.095 [details]
2010
- Tourova, T. P., Kovaleva, O. L., Sorokin, D. Y., & Muyzer, G. (2010). Ribulose-1,5-bisphosphate carboxylase/oxygenase genes as a functional marker for chemolithoautotrophic halophilic sulfur-oxidizing bacteria in hypersaline habitats. Microbiology, 156(7), 2016-2025. https://doi.org/10.1099/mic.0.034603-0
2009
- Rampen, S. W., Schouten, S., Elda Panoto, F., Brink, M., Andersen, R. A., Muyzer, G., Abbas, B., & Sinninghe Damsté, J. S. (2009). Phylogenetic position of attheya longicornis and attheya septentrionalis (bacillariophyta). Journal of phycology, 45(2), 444-453. https://doi.org/10.1111/j.1529-8817.2009.00657.x
- Vanelslander, B., Créach, V., Vanormelingen, P., Ernst, A., Chepurnov, V. A., Sahan, E., Muijzer, G., Stal, L. J., Vyverman, W., & Sabbe, K. (2009). Ecological differentiation between sympatric pseudocryptic species in the estuarine benthic diatom Navicula phyllepta (Bacillariophyceae). Journal of phycology, 45(6), 1278-1289. https://doi.org/10.1111/j.1529-8817.2009.00762.x [details]
- Vissers, E. W., Bodelier, P. L. E., Muyzer, G., & Laanbroek, H. J. (2009). A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples. FEMS Microbiology Letters, 298(2), 193-198. https://doi.org/10.1111/j.1574-6968.2009.01718.x
- de Vet, W. W. J. M., Dinkla, I. J. T., Muyzer, G., Rietveld, L. C., & van Loosdrecht, M. C. M. (2009). Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production. Water Research, 43(1), 182-194. https://doi.org/10.1016/j.watres.2008.09.038
2021
- IMG/M Data Consortium (2021). Publisher Correction: A genomic catalog of Earth’s microbiomes. Nature Biotechnology, 39(4), 520. https://doi.org/10.1038/s41587-020-00769-4
2013
- Muijzer, G. (2013). Microbiële Systeemecologie: van beschrijvend naar verklarend onderzoek. (Oratiereeks). Vossiuspers UvA. http://www.oratiereeks.nl/upload/pdf/PDF-7970weboratie_Muijzer_def.pdf [details]
2016
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). The discovery of Nanohaloarchaea in metagenomes of Siberian hypersaline soda brines.
- Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S., Hugenholtz, P., & Muijzer, G. (2016). “Nanohaloarchaea” Population Genomes In Metagenomes From Siberian Hypersaline Soda Brines.
Prijs / subsidie
- Muyzer, G. (2013). ERC Advanced Grant PARASOL.
2022
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 2 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251762.v1
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Additional file 1 of Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.21251756.v1
- Campana, S., Riesgo, A., Jongepier, E., Fuss, J., Muyzer, G. & de Goeij, J. M. (2022). Meta-transcriptomic comparison of two sponge holobionts feeding on coral- and macroalgal-dissolved organic matter. Springer Nature. https://doi.org/10.6084/m9.figshare.c.6225476.v1
2021
- Hudspith, M., Rix, L., Achlatis, M., Bougoure, J., Guagliardo, P., Clode, P. L., Webster, N. S., Muyzer, G., Pernice, M. & De Goeij, J. M. (2021). Subcellular view of host–microbiome nutrient exchange in sponges: insights into the ecological success of an early metazoan–microbe symbiosis. DRYAD. https://doi.org/10.5061/dryad.6hdr7sr0n
2019
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O. (27-11-2019). Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper. Protein Data Bank (PDB). https://doi.org/10.2210/pdb6uwe/pdb
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O. (18-9-2019). The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus mutant with His 482 replaced by Gln. Protein Data Bank (PDB). https://doi.org/10.2210/pdb6sji/pdb
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.3. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169112.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.1. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168296.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.4. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9169232.v1
- Vavourakis, C. D., van Hall, R. & Muyzer, G. (9-8-2019). Supplementary Electronic File Online S6.2. Universiteit van Amsterdam. https://doi.org/10.21942/uva.9168761.v1
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O. (10-4-2019). The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus as isolated.. Protein Data Bank (PDB). https://doi.org/10.2210/pdb6g50/pdb
- Vavourakis, C. D., Muyzer, G., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A.-Ş., Ghai, R. & Sorokin, D. Y. (2019). Additional file 4: of Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. Figshare. https://doi.org/10.6084/m9.figshare.9723572.v1
- Vavourakis, C. D., Muyzer, G., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A.-Ş., Ghai, R. & Sorokin, D. Y. (2019). Additional file 6: of Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. Figshare. https://doi.org/10.6084/m9.figshare.9723587.v1
- Vavourakis, C. D., Muyzer, G., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A.-Ş., Ghai, R. & Sorokin, D. Y. (2019). Additional file 10: of Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. Figshare. https://doi.org/10.6084/m9.figshare.9723527.v1
- Vavourakis, C. D., Muyzer, G., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A.-Ş., Ghai, R. & Sorokin, D. Y. (2019). Additional file 7: of Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. Figshare. https://doi.org/10.6084/m9.figshare.9723593.v1
2018
- Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O. (28-11-2018). The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus complex with acetate ions.. Protein Data Bank (PDB). https://doi.org/10.2210/pdb6i3q/pdb
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 3: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109261.v1
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 4: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109276.v1
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 9: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109339.v1
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 5: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109285.v1
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 6: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109300.v1
- Vavourakis, C. D., Muyzer, G., Andrei, A.-S., Mehrshad, M., Ghai, R. & Sorokin, D. Y. (2018). Additional file 7: of A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments. Figshare. https://doi.org/10.6084/m9.figshare.7109318.v1
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Diao, M., Balkema, C., Suárez-Muñoz, M., Huisman, J., & Muyzer, G. (2023). Succession of bacteria and archaea involved in the nitrogen cycle of a seasonally stratified lake. FEMS Microbiology Letters, 370, Article fnad013.