Prof. dr. F. (Ferry) Hagen
Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
- Science Park 904
Postal address
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Postbus 94240
1090 GE Amsterdam
Contact details
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Profile
Ferry Hagen is group leader of the department Medical Mycology at the Westerdijk Fungal Biodiversity Institute (WI-KNAW), Utrecht, The Netherlands. He obtained his Bachelor’s degree in Molecular Biology at the HU University of Applied Sciences Utrecht in 2005, and a year later he started with his PhD project at the CBS-KNAW Fungal Biodiversity Center in Utrecht, The Netherlands. The focus of this research project was the molecular epidemiology of the Cryptococcus gattii species complex, with an emphasis on the outbreaks in temperate climate zones.
In 2011 he received his PhD degree from the Utrecht University, Utrecht, The Netherlands, and directly thereafter he started with a traineeship at the Canisius Wilhelmina Hospital to become medical molecular microbiologist. The molecular epidemiology, molecular diagnostics of fungal pathogens, and emerging antifungal resistance are his main interests. He is co-founder of the Young ISHAM, treasurer of the Netherlands Society for Medical Mycology, chair of the Division Microbial Genomics of the Royal Netherlands Society for Microbiology, and member of the Editorial Board of Mycopathologia, Medical Mycology, Clinical Microbiology Reviews, and Revista Iberoamericana de Micología.
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Publications
2024
- Bhunjun, C. S., Chen, Y. J., Phukhamsakda, C., Boekhout, T., Groenewald, J. Z., McKenzie, E. H. C., Francisco, E. C., Frisvad, J. C., Groenewald, M., Hurdeal, V. G., Luangsa-Ard, J., Perrone, G., Visagie, C. M., Bai, F. Y., Błaszkowski, J., Braun, U., de Souza, F. A., de Queiroz, M. B., Dutta, A. K., ... Crous, P. W. (2024). What are the 100 most cited fungal genera? Studies in Mycology, 108(1), 1-412. https://doi.org/10.3114/sim.2024.108.01
- Chang, C. C., Harrison, T. S., Bicanic, T. A., Chayakulkeeree, M., Sorrell, T. C., Warris, A., Hagen, F., Spec, A., Oladele, R., Govender, N. P., Chen, S. C., Mody, C. H., Groll, A. H., Chen, Y. C., Lionakis, M. S., Alanio, A., Castañeda, E., Lizarazo, J., Vidal, J. E., ... Perfect, J. R. (2024). Global guideline for the diagnosis and management of cryptococcosis: an initiative of the ECMM and ISHAM in cooperation with the ASM. The Lancet Infectious Diseases, 24(8), e495-e512. https://doi.org/10.1016/S1473-3099(23)00731-4
- Francisco, E. C., Desnos-Ollivier, M., Dieleman, C., Boekhout, T., Santos, D. W. D. C. L., Medina-Pestana, J. O., Colombo, A. L., & Hagen, F. (2024). Unveiling Trichosporon austroamericanum sp. nov. A Novel Emerging Opportunistic Basidiomycetous Yeast Species. Mycopathologia, 189(3), Article 43. https://doi.org/10.1007/s11046-024-00851-4
Guevara, A., Pereira Siqueira, N., Sousa Pereira, R., Braga dos Santos, T., Breder Assis, S., Pires de Camargo, Z., Messias Rodrigues, A., Hagen, F., & Hahn, R. C. (2024). Clinical response to prednisone in a severe case of infant-juvenile paracoccidioidomycosis. Revista Iberoamericana de Micologia, 41(1), 27-30. https://doi.org/10.1016/j.riam.2024.04.001 [details]- Konings, M., Gerrits van den Ende, B., Raats, M. W. J., Fahal, A. H., van de Sande, W. W. J., & Hagen, F. (2024). Complete Genome Sequence of the Itraconazole Decreased Susceptible Madurella fahalii Type-Strain CBS 129176. Mycopathologia, 189(1), Article 6. https://doi.org/10.1007/s11046-023-00807-0 [details]
- Mixão, V., Saus, E., Hagen, F., Boekhout, T., Stevens, R. W., & Gabaldón, T. (2024). A yeast love triangle: multiple hybridizations shape genome evolution in the Pichia cactophila species complex. Mycosphere, 15(1), 1083-1109. https://doi.org/10.5943/MYCOSPHERE/15/1/9 [details]
- Poplin, V., Smith, C., Caceres, D. H., Herkert, P. F., Jegede, O., Thompson, G. R., Baddley, J. W., Schwartz, I. S., Kubat, R., Deka, M. A., Toda, M., Lockhart, S. R., Chiller, T., Hagen, F., & Bahr, N. C. (2024). Geographical distribution of the Cryptococcus gattii species complex: a systematic review. The Lancet Microbe, 5(12), Article 100921. https://doi.org/10.1016/S2666-5247(24)00161-7
- Spruijtenburg, B., Rezusta, A., Houbraken, J., Hagen, F., de Groot, T., Meis, J. F., & Meijer, E. F. J. (2024). Susceptibility Testing of Environmental and Clinical Aspergillus sydowii Demonstrates Potent Activity of Various Antifungals. Mycopathologia, 189(4), Article 61. https://doi.org/10.1007/s11046-024-00869-8
- Zhou, Y. B., Rezaei-Matehkolaei, A., Meijer, M., Kraak, B., Gerrits van den Ende, B., Hagen, F., Afzalzadeh, S., Kiasat, N., Takesh, A., Hoseinnejad, A., & Houbraken, J. (2024). Aspergillus hubkae, a Novel Species Isolated from a Patient with Probable Invasive Pulmonary Aspergillosis. Mycopathologia, 189(3), Article 44. https://doi.org/10.1007/s11046-024-00848-z [details]
- van Eijk, N. M. H. A., Houben, R. M. A. C., Tellegen, A. R., Hagen, F., & Ankringa, N. (2024). Pulmonary cryptococcoma in a Friesian horse in the Netherlands. Veterinary Record Case Reports, 12(2), Article e829. https://doi.org/10.1002/vrc2.829
2023
- Daneshnia, F., Arastehfar, A., Lombardi, L., Binder, U., Scheler, J., Vahedi Shahandashti, R., Hagen, F., Lass-Flörl, C., Mansour, M. K., Butler, G., & Perlin, D. S. (2023). Candida parapsilosis isolates carrying mutations outside FKS1 hotspot regions confer high echinocandin tolerance and facilitate the development of echinocandin resistance. International Journal of Antimicrobial Agents, 62(1), Article 106831. https://doi.org/10.1016/j.ijantimicag.2023.106831
- De Jong, A. W., Al-Obaid, K., Mohd Tap, R., van den Ende, B. G., Groenewald, M., Joseph, L., Ahmad, S., & Hagen, F. (2023). Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex. Medical Mycology, 61(2), Article myad009. https://doi.org/10.1093/mmy/myad009
- Gerrits van den Ende, B., Rodrigues, A. M., Hahn, R. C., & Hagen, F. (2023). A surprising finding: The curious case of a tongue lesion misdiagnosed as paracoccidioidomycosis. Revista Iberoamericana de Micologia, 40(1), 10-14. https://doi.org/10.1016/j.riam.2022.11.002
- Kidd, S. E., Abdolrasouli, A., & Hagen, F. (2023). Fungal Nomenclature: Managing Change is the Name of the Game. Open Forum Infectious Diseases, 10(1), Article ofac559. https://doi.org/10.1093/ofid/ofac559 [details]
- Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M.-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d’Enfert, C., Engelthaler, D. M., Eyre, D. W., ... Cuomo, C. A. (2023). Comparing genomic variant identification protocols for Candida auris. Microbial Genomics, 9(4), Article 000979. https://doi.org/10.1099/mgen.0.000979 [details]
- Losada, L. C. D. M. L., Monteiro, R. C., de Carvalho, J. A., Hagen, F., Fisher, M. C., Spruijtenburg, B., Meis, J. F., de Groot, T., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., de Camargo, Z. P., & Rodrigues, A. M. (2023). High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging Sporothrix Species. Journal of Fungi, 9(3), Article 354. https://doi.org/10.3390/jof9030354
- Nourrisson, C., Moniot, M., Lavergne, R.-A., Robert, E., Bonnin, V., Hagen, F., Grenouillet, F., Cafarchia, C., Butler, G., Cassaing, S., Sabou, M., Le Pape, P., Poirier, P., & Morio, F. (2023). Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples. Clinical Microbiology and Infection, 29(2), 257.e7-257.e11. https://doi.org/10.1016/j.cmi.2022.09.021 [details]
- Pinheiro, B. G., Pôssa, A. P., Ricci, G., Nishikaku, A. S., Hagen, F., Hahn, R. C., de Camargo, Z. P., & Rodrigues, A. M. (2023). Development of a Multiplex qPCR Assay for Fast Detection and Differentiation of Paracoccidioidomycosis Agents. Journal of Fungi, 9(3), Article 358. https://doi.org/10.3390/jof9030358
- Wilmes, D., Hagen, F., Verissimo, C., Alanio, A., Rickerts, V., & Buitrago, M. J. (2023). A multicentre external quality assessment: A first step to standardise PCR protocols for the diagnosis of histoplasmosis and coccidioidomycosis. Mycoses, 66(9), 774-786. https://doi.org/10.1111/myc.13603
2022
- Francisco, E. C., & Hagen, F. (2022). JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients. Journal of Medical Microbiology, 71(12). https://doi.org/10.1099/jmm.0.001621
- Guevara, A., Nery, A. F., de Souza Carvalho Melhem, M., Bonfietti, L., Rodrigues, A. M., Hagen, F., de Carvalho, J. A., de Camargo, Z. P., Jacomel F de Souza Lima, B., Vicente, V. A., & Hahn, R. C. (2022). Molecular epidemiology and clinical-laboratory aspects of chromoblastomycosis in Mato Grosso, Brazil. Mycoses, 65(12), 1146-1158. https://doi.org/10.1111/myc.13505
- Guevara, A., Vicente, V. A., de Souza Lima, B. J. F., Nery, A. F., Hagen, F., & Hahn, R. C. (2022). Chromoblastomycosis-Leprosy Co-Infection in Central West Brazil. Presentation of Three Cases and Literature Review. Mycopathologia, 187(4), 363-374. https://doi.org/10.1007/s11046-022-00646-5
- Hahn, R. C., Hagen, F., Mendes, R. P., Burger, E., Nery, A. F., Siqueira, N. P., Guevara, A., Rodrigues, A. M., & de Camargo, Z. P. (2022). Paracoccidioidomycosis: Current Status and Future Trends. Clinical microbiology reviews, 35(4), Article e0023321. Advance online publication. https://doi.org/10.1128/cmr.00233-21
- Hare, R. K., Arastehfar, A., Rosendahl, S., Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F., & Arendrup, M. C. (2022). Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis. Journal of Fungi, 8(2). https://doi.org/10.3390/jof8020183
- Initiative, F. PCR., White, P. L., Alanio, A., Brown, L., Cruciani, M., Hagen, F., Gorton, R., Lackner, M., Millon, L., Morton, C. O., Rautemaa-Richardson, R., Barnes, R. A., Donnelly, J. P., & Loffler, J. (2022). An overview of using fungal DNA for the diagnosis of invasive mycoses. Expert Review of Molecular Diagnostics, 22(2), 169-184. https://doi.org/10.1080/14737159.2022.2037423
- Rodrigues, A. M., Hagen, F., & de Camargo, Z. P. (2022). A Spotlight on Sporothrix and Sporotrichosis. Mycopathologia, 187(4), 407-411. https://doi.org/10.1007/s11046-022-00642-9
- de Carvalho, J. A., Monteiro, R. C., Hagen, F., Camargo, Z. P. D., & Rodrigues, A. M. (2022). Trends in Molecular Diagnostics and Genotyping Tools Applied for Emerging Sporothrix Species. Journal of Fungi, 8(8), Article 809. https://doi.org/10.3390/jof8080809
- de Jong, A. W., Gerrits van den Ende, B., & Hagen, F. (2022). Molecular Tools for Candida auris Identification and Typing. Methods in Molecular Biology, 2517, 33-41. https://doi.org/10.1007/978-1-0716-2417-3_3
- de Jong, A. W., van Veldhuizen, D., Groot, A. T., & Hagen, F. (2022). Standardized methods to rear high-quality Galleria mellonella larvae for the study of fungal pathogens. Entomologia Experimentalis et Applicata, 170(12), 1073-1080. https://doi.org/10.1111/eea.13237 [details]
- van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H. V., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J., & van den Wijngaard, R. M. (2022). Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome. Scientific Reports, 12, Article 5391. https://doi.org/10.1038/s41598-022-09436-x
2021
- Arastehfar, A., Daneshnia, F., Hilmioglu-Polat, S., Ilkit, M., Yasar, M., Polat, F., Metin, D. Y., Dokumcu, Ü. Z., Pan, W., Hagen, F., Boekhout, T., Perlin, D. S., & Lass-Flörl, C. (2021). Genetically related micafungin-resistant Candida parapsilosis blood isolates harbouring novel mutation R658G in hotspot 1 of Fks1p: a new challenge? Journal of Antimicrobial Chemotherapy, 76(2), 418–422. https://doi.org/10.1093/jac/dkaa419 [details]
- Castelo-Branco, D., Lockhart, S. R., Chen, Y-C., Santos, D. A., Hagen, F., Jane Hawkins, N., Lavergne, R-A., Meis, J., Le Pape, P., Fabio Gadelha Rocha, M., Julio Costa Sidrim, J., Arendrup, M., & Morio, F. (2021). Collateral consequences of agricultural fungicides on pathogenic yeasts: a One Health perspective to tackle azole resistance. Mycoses. https://doi.org/10.1111/myc.13404
- Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., ... Thines, M. (2021). Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology, 98(1), Article 100116. https://doi.org/10.1016/j.simyco.2021.100116 [details]
- Della Terra, P. P., Gonsales, F. F., de Carvalho, J. A., Hagen, F., Kano, R., Bonifaz, A., Camargo, Z. P. D., & Rodrigues, A. M. (2021). Development and evaluation of a multiplex qPCR assay for rapid diagnostics of emerging sporotrichosis. Transboundary and emerging diseases. https://doi.org/10.1111/tbed.14350
- Hagen, F., Chidebelu, P., Nweze, E., Meis, J., & Cogliati, M. (2021). Multi-locus sequence typing reveals genotypic similarity in Nigerian Cryptococcus neoformans AFLP1/VNI of environmental and clinical origin. Journal of Medical Microbiology, 70(10). https://doi.org/10.1099/jmm.0.001440
- Roberto, T. N., de Carvalho, J. A., Beale, M. A., Hagen, F., Fisher, M. C., Hahn, R. C., de Camargo, Z. P., & Rodrigues, A. M. (2021). Exploring genetic diversity, population structure, and phylogeography in Paracoccidioides species using AFLP markers. Studies in Mycology, 100. https://doi.org/10.1016/j.simyco.2021.100131
- Shi, D., Haas, P-J., Boekhout, T., Hahn, R. C., & Hagen, F. (2021). Neglecting Genetic Diversity Hinders Timely Diagnosis of Cryptococcus Infections. Journal of Clinical Microbiology, 59(4), Article e02837-20. https://doi.org/10.1128/JCM.02837-20 [details]
- Silva, C., Juan-Sallés, C., Mendes, J., Mendes, A., Ruivo, M., Abad, J. L., Hagen, F., & Colom, M. F. (2021). Cryptococcus bacillisporus causing cryptococcoma of the beak of an African grey parrot (Psittacus erithacus), Portugal. Medical Mycology Case Reports, 34, 8-12. https://doi.org/10.1016/j.mmcr.2021.08.006
- Siqueira, N. P., Favalessa, O. C., Maruyama, F. H., Dutra, V., Nakazato, L., Hagen, F., & Hahn, R. C. (2021). Domestic Birds as Source of Cryptococcus deuterogattii (AFLP6/VGII): Potential Risk for Cryptococcosis. Mycopathologia. https://doi.org/10.1007/s11046-021-00601-w
- Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., ... Boekhout, T. (2021). Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA Fungus, 12, Article 18. https://doi.org/10.1186/s43008-021-00067-x [details]
- de Jong, A. W., Francisco, E. C., de Almeida, J. N., Brandão, I. B., Pereira, F. M., Dias, P. H. P., de Miranda Costa, M. M., de Souza Jordão, R. T., Vu, D., Colombo, A. L., & Hagen, F. (2021). Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil. Mycopathologia. https://doi.org/10.1007/s11046-021-00593-7
2020
- Arastehfar, A., Daneshnia, F., Hafez, A., Khodavaisy, S., Najafzadeh, M-J., Charsizadeh, A., Zarrinfar, H., Salehi, M., Zare Shahrabadi, Z., Sasani, E., Zomorodian, K., Pan, W., Hagen, F., Ilkit, M., Kostrzewa, M., & Boekhout, T. (2020). Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates. Medical Mycology, 58(6), 766–773. https://doi.org/10.1093/mmy/myz124 [details]
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- myz124
- Supplementary files
- myz124 supplement tables
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- Arastehfar, A., Daneshnia, F., Hilmioğlu-Polat, S., Fang, W., Yaşar, M., Polat, F., Metin, D. Y., Rigole, P., Coenye, T., Ilkit, M., Pan, W., Liao, W., Hagen, F., Kostrzewa, M., Perlin, D. S., Lass-Flörl, C., & Boekhout, T. (2020). First Report of Candidemia Clonal Outbreak Caused by Emerging Fluconazole-Resistant Candida parapsilosis Isolates Harboring Y132F and/or Y132F+K143R in Turkey. Antimicrobial Agents and Chemotherapy, 64(10), Article e01001-20. https://doi.org/10.1128/AAC.01001-20 [details]
- Arastehfar, A., Daneshnia, F., Najafzadeh, M. J., Hagen, F., Mahmoudi, S., Salehi, M., Zarrinfar, H., Namvar, Z., Zareshahrabadi, Z., Khodavaisy, S., Zomorodian, K., Pan, W., Theelen, B., Kostrzewa, M., Boekhout, T., & Lass-Flörl, C. (2020). Evaluation of Molecular Epidemiology, Clinical Characteristics, Antifungal Susceptibility Profiles, and Molecular Mechanisms of Antifungal Resistance of Iranian Candida parapsilosis Species Complex Blood Isolates. Frontiers in Cellular and Infection Microbiology, 10, Article 206. https://doi.org/10.3389/fcimb.2020.00206 [details]
- Vatanshenassan, M., Boekhout, T., Mauder, N., Robert, V., Maier, T., Meis, J. F., Berman, J., Then, E., Kostrzewa, M., & Hagen, F. (2020). Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris. Journal of Fungi, 6(3), Article 146. https://doi.org/10.3390/jof6030146 [details]
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- jof-06-00146
- Supplementary files
- jof-06-00146-s001
- jof-06-00146-s001
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2019
- Arastehfar, A., Bakhtiari, M., Daneshnia, F., Fang, W., Sadati, S. K., Al-Hatmi, A. M. S., Groenewald, M., Sharifi-Mehr, H., Liao, W., Pan, W., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). First fungemia case due to environmental yeast Wickerhamomyces myanmarensis: detection by multiplex qPCR and antifungal susceptibility. Future Microbiology, 14(4), 267-274. https://doi.org/10.2217/fmb-2018-0253 [details]
- Arastehfar, A., Boekhout, T., Butler, G., Buda De Cesare, G., Dolk, E., Gabaldón, T., Hafez, A., Hube, B., Hagen, F., Hovhannisyan, H., Iracane, E., Kostrzewa, M., Lackner, M., Lass-Flörl, C., Llorens, C., Mixão, V., Munro, C., Oliveira-Pacheco, J., Pekmezovic, M., ... Vatanshenassan, M. (2019). Recent trends in molecular diagnostics of yeast infections: From PCR to NGS. FEMS Microbiology Reviews, 43(5), 517-547. https://doi.org/10.1093/femsre/fuz015
- Arastehfar, A., Daneshnia, F., Farahyar, S., Fang, W., Salimi, M., Salehi, M., Hagen, F., Weihua, P., Roudbary, M., & Boekhout, T. (2019). Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies. Journal of Oral Microbiology, 11(1), Article 1601061. https://doi.org/10.1080/20002297.2019.1601061 [details]
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- 8 25 2020 Incidence
- Supplementary files
- zjom a 1601061 sm4652
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- Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, Article 21. https://doi.org/10.3389/fcimb.2019.00021 [details]
- Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F., & Boekhout, T. (2019). Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Frontiers in Cellular and Infection Microbiology, 9, Article 176. https://doi.org/10.3389/fcimb.2019.00176
- Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(11), 1695. https://doi.org/10.1099/jmm.0.001075
- Arastehfar, A., Daneshnia, F., Salehi, M. R., Zarrinfar, H., Khodavaisy, S., Haas, P.-J., Roudbary, M., Najafzadeh, M.-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular characterization and antifungal susceptibilitytesting of Candida nivariensis from blood samples – an Iranian multicentre study and a review of the literature. Journal of Medical Microbiology, 68(5), 770-777. https://doi.org/10.1099/jmm.0.000963 [details]
- Arastehfar, A., Daneshnia, F., Zomorodian, K., Najafzadeh, M. J., Khodavaisy, S., Zarrinfar, H., Hagen, F., Zare Shahrabadi, Z., Lackner, M., Mirhendi, H., Salehi, M., Roudbary, M., Pan, W., Kostrzewa, M., & Boekhout, T. (2019). Low level of antifungal resistance in Iranian isolates of Candida glabrata recovered from blood samples in a multicenter study from 2015 to 2018 and potential prognostic values of genotyping and sequencing of PDR1. Antimicrobial Agents and Chemotherapy, 63(7), Article e02503-18. https://doi.org/10.1128/AAC.02503-18 [details]
- Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaisy, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K., & Boekhout, T. (2019). Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(8), Article e12. https://doi.org/10.1093/mmy/myz025
- Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaiysi, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K., & Boekhout, T. (2019). Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Medical Mycology, 57(7), 833–840. https://doi.org/10.1093/mmy/myy148 [details]
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- myy148
- Supplementary files
- myy148 supplemental files
- Corrigendum
- Downloads
- Arastehfar, A., Fang, W., Daneshnia, F., Al-Hatmi, A. M. S., Liao, W., Pan, W., Khan, Z., Ahmad, S., Rosam, K., Lackner, M., Lass-Flörl, C., Hagen, F., & Boekhout, T. (2019). Novel multiplex real-time quantitative PCR detecting system approach for direct detection of Candida auris and its relatives in spiked serum samples. Future Microbiology, 14(1), 33-45. https://doi.org/10.2217/fmb-2018-0227 [details]
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- fmb-2018-0227
- Supplementary files
- supplementarytables
- supplementaryfigure1
- Downloads
- Arastehfar, A., Fang, W., Pan, W., Lackner, M., Liao, W., Badiee, P., Zomorodian, K., Badali, H., Hagen, F., Lass-Flörl, C., & Boekhout, T. (2019). YEAST PANEL multiplex PCR for identification of clinically important yeast species. Diagnostic Microbiology and Infectious Disease, 93(2), 112-119. https://doi.org/10.1016/j.diagmicrobio.2018.09.007 [details]
- Arastehfar, A., Khodavaisy, S., Daneshnia, F., Najafzadeh, M.-J., Mahmoudi, S., Charsizadeh, A., Salehi, M.-R., Zarrinfar, H., Raeisabadi, A., Dolatabadi, S., Zare Shahrabadi, Z., Zomorodian, K., Pan, W., Hagen, F., & Boekhout, T. (2019). Molecular Identification, Genotypic Diversity, Antifungal Susceptibility, and Clinical Outcomes of Infections Caused by Clinically Underrated Yeasts, Candida orthopsilosis, and Candida metapsilosis: An Iranian Multicenter Study (2014–2019). Frontiers in Cellular and Infection Microbiology, 9, Article 264. https://doi.org/10.3389/fcimb.2019.00264 [details]
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- fcimb-09-00264
- Supplementary files
- 4593614
- Downloads
- Cogliati, M., Desnos-Ollivier, M., McCormick-Smith, I., Rickerts, V., Ferreira-Paim, K., Meyer, W., Boekhout, T., Hagen, F., Theelen, B., Inácio, J., Alonso, B., Colom, M. F., Trilles, L., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., ... Lockhart, S. R. (2019). Genotypes and population genetics of cryptococcus neoformans and cryptococcus gattii species complexes in Europe and the mediterranean area. Fungal Genetics and Biology, 129, 16-29. https://doi.org/10.1016/j.fgb.2019.04.001 [details]
- Gao, Y., Zhan, P., Hagen, F., Menken, S. B. J., Sun, J., Rezaei-Matehkolaei, A., & de Hoog, S. (2019). Molecular epidemiology and in vitro antifungal susceptibility of Trichophyton schoenleinii, agent of tinea capitis favosa. Mycoses, 62(5), 466-474. https://doi.org/10.1111/myc.12889
- Hong, N., Chen, M., Xu, N., Al-Hatmi, A. M. S., Zhang, C., Pan, W. H., Hagen, F., Boekhout, T., Xu, J., Zou, X. B., & Liao, W. Q. (2019). Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans isolates from paediatric patients in China. Mycoses, 62(2), 171-180. Advance online publication. https://doi.org/10.1111/myc.12863 [details]
- Kortsinoglou, A. M., Korovesi, A. G., Theelen, B., Hagen, F., Boekhout, T., & Kouvelis, V. N. (2019). The mitochondrial intergenic regions nad1-cob and cob-rps3 as molecular identification tools for pathogenic members of the genus Cryptococcus. FEMS Yeast Research, 19(8), Article foz077. https://doi.org/10.1093/femsyr/foz077 [details]
2018
- Arastehfar, A., Fang, W., Badali, H., Vaezi, A., Jiang, W., Liao, W., Pan, W., Hagen, F., & Boekhout, T. (2018). Low-Cost Tetraplex PCR for the Global Spreading Multi-Drug Resistant Fungus, Candida auris and Its Phylogenetic Relatives. Frontiers in Microbiology, 9, Article 1119. https://doi.org/10.3389/fmicb.2018.01119 [details]
- Kaplan, E., Al-Hatmi, A. M. S., Ilkit, M., Gerrits Van Den Ende, A. H. G., Hagen, F., Meis, J. F., & Sybren De Hoog, G. (2018). Molecular diagnostics of arthroconidial yeasts, frequent pulmonary opportunists. Journal of Clinical Microbiology, 56(1), Article e01427. https://doi.org/10.1128/JCM.01427-17
- Shokohi, T., Aslani, N., Ahangarkani, F., Meyabadi, M. F., Hagen, F., Meis, J. F., Boekhout, T., Kolecka, A., & Badali, H. (2018). Candida infanticola and Candida spencermartinsiae yeasts: Possible emerging species in cancer patients. Microbial Pathogenesis, 115, 353-357. https://doi.org/10.1016/j.micpath.2017.12.069 [details]
2017
- Cogliati, M., Puccianti, E., Montagna, M. T., De Donno, A., Susever, S., Ergin, C., Velegraki, A., Ellabib, M. S., Nardoni, S., Macci, C., Trovato, L., Dipineto, L., Rickerts, V., Akcaglar, S., Mlinaric-Missoni, E., Bertout, S., Venca, A. C. F., Sampaio, A. C., Criseo, G., ... Colom, M. F. (2017). Fundamental niche prediction of the pathogenicyeasts Cryptococcus neoformans and Cryptococcus gattii in Europe. Environmental Microbiology, 19(10), 4318-4325. https://doi.org/10.1111/1462-2920.13915 [details]
- Fang, W., Zhang, L., Liu, J., Denning, D. W., Hagen, F., Jiang, W-W., Hong, N., Deng, S., Lei, X., Deng, D., Liao, W., Xu, J., Boekhout, T., Chen, M., & Pan, W. (2017). Tuberculosis/cryptococcosis co-infection in China between 1965 and 2016. Emerging Microbes & Infections, 6, Article e73. https://doi.org/10.1038/emi.2017.61 [details]
- Hagen, F., Lumbsch, H. T., Arsenijevic, V. A., Badali, H., Bertout, S., Billmyre, R. B., Bragulat, M. R., Cabañes, F. J., Carbia, M., Chakrabarti, A., Chaturvedi, S., Chaturvedi, V., Chen, M., Chowdhary, A., Colom, M. F., Cornely, O. A., Crous, P. W., Cuétara, M. S., Diaz, M. R., ... Boekhout, T. (2017). Importance of resolving fungal nomenclature: The case of multiple pathogenic species in the Cryptococcus genus. mSphere, 2(4), Article e00238-17. https://doi.org/10.1128/mSphere.00238-17
- Khayhan, K., Hagen, F., Norkaew, T., Puengchan, T., Boekhout, T., & Sriburee, P. (2017). Isolation of Cryptococcus gattii from a Castanopsis argyrophylla tree hollow (Mai-Kaw), Chiang Mai, Thailand. Mycopathologia, 182(3-4), 365-370. https://doi.org/10.1007/s11046-016-0067-7 [details]
- Li, Y., Fang, W., Jiang, W., Hagen, F., Liu, J., Zhang, L., Hong, N., Zhu, Y., Xu, X., Lei, X., Deng, D., Xu, J., Liao, W., Boekhout, T., Chen, M., & Pan, W. (2017). Cryptococcosis in patients with diabetes mellitus II in mainland China: 1993‐2015. Mycoses, 60(11), 706-713. https://doi.org/10.1111/myc.12645 [details]
- Vreulink, J-M., Khayhan, K., Hagen, F., Botes, A., Moller, L., Boekhout, T., Vismer, H., & Botha, A. (2017). Presence of pathogenic cryptococci on trees situated in two recreational areas in South Africa. Fungal Ecology, 30, 101-111. https://doi.org/10.1016/j.funeco.2017.09.005
2014
- Lackner, M., de Hoog, G. S., Ferreira Moreno, L., Ahmed, S. A., Hagen, F., & ECMM/ISHAM working group on Scedosporium infections (2014). Proposed nomenclature for Pseudallescheria, Scedosporium and related genera. Fungal Diversity, 67(1), 1-10. https://doi.org/10.1007/s13225-014-0295-4 [details]
2013
- Lu, X. L., Najafzadeh, M. J., Dolatabadi, S., Ran, Y. P., Gerrits van den Ende, A. H. G., Shen, Y. N., Li, C. Y., Xi, L. Y., Hao, F., Zhang, Q. Q., Li, R. Y., Hu, Z. M., Lu, G., Wang, J. J., Drogari-Apiranthitou, M., Klaassen, C., Meis, J. F., Hagen, F., Liu, W. D., & de Hoog, G. S. (2013). Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 30, 48-56. https://doi.org/10.3767/003158513X665539 [details]
2012
- Chowdhary, A., Kathuria, S., Xu, J., Sharma, C., Sundar, G., Singh, P. K., Gaur, S. N., Hagen, F., Klaassen, C. H., & Meis, J. F. (2012). Clonal expansion and emergence of environmental multiple-triazole-resistant Aspergillus fumigatus strains carrying the TR₃₄/L98H mutations in the cyp51A gene in India. PLoS ONE, 7(12), e52871. https://doi.org/10.1371/journal.pone.0052871
2024
- Kidd, S. E., Hagen, F., Halliday, C. L., Abdolrasouli, A., Boekhout, T., Crous, P. W., Ellis, D. H., Elvy, J., Forrest, G. N., Groenewald, M., Hahn, R. C., Houbraken, J., Rodrigues, A. M., Scott, J., Sorrell, T. C., Summerbell, R. C., Tsui, C. K. M., Yurkov, A., & Chen, S. C. A. (2024). Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion. Journal of Clinical Microbiology, 62(4). https://doi.org/10.1128/jcm.01570-23
- van Rhijn, N., Arikan-Akdagli, S., Beardsley, J., Bongomin, F., Chakrabarti, A., Chen, S. C. A., Chiller, T., Lopes Colombo, A., Govender, N. P., Alastruey-Izquierdo, A., Kidd, S. E., Lackner, M., Li, R., & Hagen, F. (2024). Beyond bacteria: the growing threat of antifungal resistance. The Lancet, 404(10457), 1017-1018. https://doi.org/10.1016/S0140-6736(24)01695-7
2022
- ECMM/ISHAM working group on Scedosporium infections, Lackner, M., de Hoog, G. S., Yang, L., Ferreira Moreno, L., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Flörl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J. P., Cano-Lira, J. F., Guarro, J., ... Pellon, A. (2022). Correction to: Proposed nomenclature for Pseudallescheria, Scedosporium and related genera (Fungal Diversity, (2014), 67, 1, (1-10), 10.1007/s13225-014-0295-4). Fungal Diversity, 113(1), 193-194. https://doi.org/10.1007/s13225-022-00505-0
- Wilmes, D., Hagen, F., Verissiimo, C., Alanio, A., Rickerts, V., & Buitrago, M. J. (2022). Comparison of PCR protocols for detecting Histoplasma capsulatum and Coccidioides spp. DNA through a multicenter study. Medical Mycology, 60(Supplement 1), 269. Article P458. https://doi.org/10.1093/mmy/myac072.P458
2023
- de Jong, A. W. (2023). Fungal pathogens exposed: Novel insights into Candida auris and emerging relatives of the Candida haemulonii species complex. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
- Downloads
- Thesis (complete) (embargo until 22 December 2025)
- Front matter
- Chapter 1: Introduction
- Chapter 2: Attack, defend and persist: How the fungal pathogen Candida auris was able to emerge globally in healthcare environments
- Chapter 3: The high-quality complete genome sequence of the opportunistic fungal pathogen Candida vulturna type strain CBS14366
- Chapter 4: Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex
- Chapter 5: Performance of two novel chromogenic media for the identification of multidrugresistant Candida auris compared with other commercially available formulations
- Chapter 6: Nanopore genome sequencing and variant analysis of the susceptible Candida auris strain L1537/2020, Salvador, Brazil
- Chapter 7: Fungal pathogens exposed – genomic and phenotypic insights into Candida auris and its relatives of the Candida haemulonii species complex (embargo until 22 December 2025)
- Chapter 8: Standardized methods to rear high-quality Galleria mellonella larvae for the study of fungal pathogens
- Chapter 9: Summary and general discussion
- Chapter 10: Nederlandse samenvatting
- Dankwoord; List of publications; Portfolio; Contributing authors; Author contributions; About the author
- Downloads
2022
- Stavrou, A. A. (2022). Emerging Saccharomycotina yeast pathogens: Detection and susceptibility profiles. [Thesis, fully internal, Universiteit van Amsterdam]. [details]
- Downloads
- Thesis (complete)
- Front matter
- Chapter 1: General introduction
- Chapter 2: The changing spectrum of Saccharomycotina yeasts causing candidemia: Phylogeny mirrors antifungal susceptibility patterns for azole drugs and amphothericin B
- Chapter 3: Elevated minimum inhibitory concentrations to antifungal drugs prevail in 14 rare species of candidemia-causing Saccharomycotina yeasts
- Chapter 4: Combinatory use of human lactoferrin 1-11 [hLF(1-11)] and fluconazole or anidulafungin against clinically important Candida spp. reveal an additive effect
- Chapter 5: A novel treatment-focused multiplex TaqMan-based qPCR for the detection of 25 candidemia-associated Candida species
- Chapter 6: A TaqMan-based qPCR for the detection of Malassezia spp.
- Chapter 7: Genetic and phenotypical diversity of fecal Candida albicans strains in irritable bowel syndrome
- Chapter 8: Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications
- Chapter 9: Summary and general discussion
- Nederlandse samenvatting; Ελληνική Περίληψη; List of publications; Submitted manuscript; Manuscripts in preparation; Acknowledgements
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This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list. -
Ancillary activities
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Netherlands Society for Medical Mycology
Board Member -
SpringerNature
Associate Editor voor het tijdschrift Mycopathologia -
Westerdijk Fungal Biodiversity Institute
Group Leader -
Journal of Medical Microbiology
Editor -
KNVM - Division Microbial Genomics
Board member -
Medical Mycology
Editor -
Mycoses
Deputy Editor -
Netherlands Center for One Health (NCOH)
Executive Board member -
Revista Iberoamericana de Micologia
Editor
-
Netherlands Society for Medical Mycology
Guevara, A., Pereira Siqueira, N., Sousa Pereira, R., Braga dos Santos, T., Breder Assis, S., Pires de Camargo, Z., Messias Rodrigues, A., Hagen, F., & Hahn, R. C. (2024). Clinical response to prednisone in a severe case of infant-juvenile paracoccidioidomycosis. Revista Iberoamericana de Micologia, 41(1), 27-30.