Dr. ir. E.E. (Emiel) van Loon
Associate Professor Statistical Ecology
Faculty of Science
Institute for Biodiversity and Ecosystem Dynamics
Visiting address
- Science Park 904
- Room number: C4.162
Postal address
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Postbus 94240
1090 GE Amsterdam
Contact details
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General info
I work as Associate Professor on statistical ecology, dividing my time between teaching and research into estimation and modeling problems in the natural sciences.
Currently the following projects have my attention:
- developing models and experiments to learn about animal memory and navigation on the basis of gps-tracking as well as navigation in virtual environments (together with Evy van Berlo & Karline Janmaat),
- combining dynamic modeling and machine learning to analyse large-scale bird movement, based on weather-radar data (together with Fiona Lippert, Patrick Forre and Bart Kranstauber),
- learning about local bird movement and bird-environment interactions in coastal regions through observations from bird-tracking radars (together with Jens van Erp and Judy Shamoun-Baranes)
- agent-based modeling to understand population dynamics and effecitve monitoring methods in both birds and rodents (together with Hans Linssen, Bart Nolet and Caitlin Black), and
- quantifying the contributions from methodological choices in animal movement studies to the variation in research outcomes and conclusions.
Soaring bird migration
A while ago we created an agent-based model in Matlab, which can be used to investigate soaring bird migration. The model design and an example of it's application is described in: E.E. van Loon, J. Shamoun-Baranes, W. Bouten & S.L. Davis (2011). Understanding soaring bird migration through interactions and decisions at the individual level. Journal of Theoretical Biology, 270 (1), 112-126.
vegetation reconstruction
Boris Jansen and I developed a model to reconstruct past vegetation on the basis of biomarker data. The model is conceptually fairly simple, but performed well in the studies where it was applied so far. The model is coded in Matlab, and described in:
B. Jansen, E.E. van Loon, H. Hooghiemstra & J.M. Verstraten (2010). Improved reconstruction of palaeo-environments through unravelling of preserved vegetation biomarker patterns. Palaeogeography, Palaeoclimatology, Palaeoecology, 285 (1-2), 119-130.Mapcurves implementation
Mapcurves is a goodness-of-fit measure to compare two categorical maps by Hargrove et al. 2006. Niels Raes and I have applied it in a study to floristic regions in Borneo. For this study we coded the Mapcurves algorithm in Matlab and R.
Our Mapcurves implementation contains a Matlab function (which includes a demo option), an R function and a separate (R) demo script. The Matlab and R functions do exactly the same, but differ slightly with respect to the way in which the output is formatted. For background info about Mapcurves, see William W. Hargrove, Forrest M. Hoffman and Paul F. Hessburg (2006) Mapcurves: a quantitativemethod for comparing categorical maps. J Geograph Syst, 8, 187-208. DOI 10.1007/s10109-006-0025-x.RNCEP
Michael Kemp, a former PhD student in our CGE-group, has created a fantastic R package to process NCEP/NCAR reanalysis (weather) data for use in our bird migration models.
We did describe the package in: Kemp M.U., E.E. van Loon, J. Shamoun-Baranes, W. Bouten (2011) RNCEP: global weather and climate data at your fingertips. Methods in Ecology and Evolution. doi: 10.1111/j.2041-210X.2011.00138.x
For anyone using weather data in ecological models, the RNCEP package may contain very useful functions.Teaching
I lecture in the BSc and MSc programs of the earth and biological sciences, beta-gamma and future planet studies (see the link below for an overview). These courses cover statistics and research methods in the natural sciences. In addition, I supervise MSc students during their thesis work. If you are interested in statistical or methodological issues, especially when these relate to biogeography or spatio-temporal dynamics, you may consider to conduct an MSc thesis under my supervision.
Links:
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Publications
- refereed (130)
- academic (2)
- professional (4)
- popular scientific (2)
- conference contributions (2)
- recognitions (1)
- datasets (42)
2024
Fijn, R. C., Courtens, W., Engels, B. W. R., van Loon, E. E., & Shamoun-Baranes, J. (2024). Combining video and GPS-tracking to study the spatial foraging distribution of a single-prey loading seabird. Avian Research, 15, Article 100196. https://doi.org/10.1016/j.avrs.2024.100196 [details]- Fijn, R. C., van Bemmelen, R. S. A., Collier, M. P., Courtens, W., van Loon, E. E., Poot, M. J. M., & Shamoun-Baranes, J. (2024). Evaluation of tag attachment techniques for plunge-diving terns. Ibis. Advance online publication. https://doi.org/10.1111/ibi.13306
- Hoekstra, B., Bouten, W., Dokter, A., van Gasteren, H., van Turnhout, C., Kranstauber, B., van Loon, E., Leijnse, H., & Shamoun-Baranes, J. (2024). Fireworks disturbance across bird communities. Frontiers in Ecology and the Environment, 22(1), Article e2694. https://doi.org/10.1002/fee.2694 [details]
- Linssen, H., van Loon, E. E., Shamoun-Baranes, J. Z., Vergin, L., Leyrer, J., & Nolet, B. A. (2024). Tracking data as an alternative to resighting data for inferring population ranges. Journal of Biogeography. Advance online publication. https://doi.org/10.1111/jbi.14996
- Lippert, F., Kranstauber, B., Forré, P. D., & van Loon, E. E. (2024). Towards detailed and interpretable hybrid modeling of continental-scale bird migration. In AI for Science Workshop at the 41st International Conference on Machine Learning (ICML), 2024 https://doi.org/10.48550/arXiv.2407.10259
- Te Wierik, S. A., Keune, J., Miralles, D. G., Gupta, J., Artzy-Randrup, Y. A., Cammeraat, L. H., & van Loon, E. E. (2024). Critical Importance of Tree and Non-Tree Vegetation for African Precipitation. Geophysical Research Letters, 51(20), Article e2023GL103274. https://doi.org/10.1029/2023GL103274 [details]
- Ter Laak, T. L., Emke, E., Dolot, N., van Loon, E. E., van der Kooi, M. M. E., van Asten, A. C., & de Voogt, P. (2024). Mapping consumptions and market size of cocaine, amphetamine and MDMA through wastewater analysis: A Dutch case study. Addiction. Advance online publication. https://doi.org/10.1111/add.16649
- Tulp, T., Tietema, A., van Loon, E. E., Ebben, B., van Hall, R. L., van Son, M., & Barmentlo, S. H. (2024). Biomonitoring of dairy farm emitted ammonia in surface waters using phytoplankton and periphyton. Science of the Total Environment, 908, Article 168259. https://doi.org/10.1016/j.scitotenv.2023.168259 [details]
- Witteveen, N. H., Blaus, A., Raczka, M. F., Herrick, C., Palace, M., Nascimento, M. N., van Loon, E. E., Gosling, W. D., Bush, M. B., & McMichael, C. N. H. (2024). Quantifying local-scale changes in Amazonian forest cover using phytoliths. Frontiers of Biogeography, 16(1), Article e62254. https://doi.org/10.21425/F5FBG62254
- van Erp, J. A., van Loon, E. E., De Groeve, J., Bradarić, M., & Shamoun-Baranes, J. (2024). A framework for post-processing bird tracks from automated tracking radar systems. Methods in Ecology and Evolution, 15(1), 130-143. https://doi.org/10.1111/2041-210X.14249 [details]
2023
- Aschi, F., Dekker, S. C., van Vuuren, D. P., Bogaart, P. W., Rijsdijk, K. F., & van Loon, E. E. (2023). Costs and benefits of protecting linear landscape elements: Applying systematic conservation planning on a case study in the Netherlands. Journal of Environmental Management, 348, Article 119262. https://doi.org/10.1016/j.jenvman.2023.119262
- Chittar, C. R., Jang, H., Samuni, L., Lewis, J., Honing, H., van Loon, E. E., & Janmaat, K. R. L. (2023). Music production and its role in coalition signaling during foraging contexts in a hunter-gatherer society. Frontiers in Psychology, 14, Article 1218394. https://doi.org/10.3389/fpsyg.2023.1218394 [details]
- Kroes, R., Winkel, Y., Breeuwer, J. A. J., van Loon, E. E., Loader, S. P., Maclaine, J. S., Verdonschot, P. F. M., & van der Geest, H. G. (2023). Phylogenetic analysis of museum specimens of houting Coregonus oxyrinchus shows the need for a revision of its extinct status. BMC ecology and evolution, 23(1), Article 57. https://doi.org/10.1186/s12862-023-02161-7
- Li, Q., Steenberg Larsen, K., Kopittke, G., van Loon, E., & Tietema, A. (2023). Long-term temporal patterns in ecosystem carbon flux components and overall balance in a heathland ecosystem. Science of the Total Environment, 875, Article 162658. https://doi.org/10.1016/j.scitotenv.2023.162658 [details]
- Linssen, H., van Loon, E. E., Shamoun-Baranes, J. Z., Nuijten, R. J. M., & Nolet, B. A. (2023). Migratory swans individually adjust their autumn migration and winter range to a warming climate. Global Change Biology, 29(24), 6888-6899. https://doi.org/10.1111/gcb.16953 [details]
- Lippert, F., Kranstauber, B., van Loon, E. E., & Forré, P. D. (in press). Deep Gaussian Markov Random Fields for Graph-Structured Dynamical Systems. In 37th Conference on Neural Information Processing Systems (NeurIPS 2023) (Advances in Neural Information Processing Systems; Vol. 36). Neural Information Processing Systems Foundation. https://doi.org/10.48550/arXiv.2306.08445
- Mumme, S., Middleton, A. D., Ciucci, P., De Groeve, J., Corradini, A., Aikens, E. O., Ossi, F., Atwood, P., Balkenhol, N., Cole, E. K., Debeffe, L., Dewey, S. R., Fischer, C., Gude, J., Heurich, M., Hurley, M. A., Jarnemo, A., Kauffman, M. J., Licoppe, A., ... Cagnacci, F. (2023). Wherever I may roam—Human activity alters movements of red deer (Cervus elaphus) and elk (Cervus canadensis) across two continents. Global Change Biology, 29(20), 5788-5801. https://doi.org/10.1111/gcb.16769
- Schaller, C., Ginzler, C., van Loon, E., Moos, C., Seijmonsbergen, A. C., & Dorren, L. (2023). Improving country-wide individual tree detection using local maxima methods based on statistically modeled forest structure information. International Journal of Applied Earth Observation and Geoinformation, 123, Article 103480. https://doi.org/10.1016/j.jag.2023.103480 [details]
- Thomas, C. L., Jansen, B., Czerwínski, S., Gafka, M., Knorr, K., van Loon, E. E., Egli, M., & Wiesenberg, G. L. B. (2023). Comparison of paleobotanical and biomarker records of mountain peatland and forest ecosystem dynamics over the last 2600 years in Central Germany. Biogeosciences, 20(23), 4893-4914. https://doi.org/10.5194/bg-20-4893-2023
- van Erp, J., Sage, E., Bouten, W., van Loon, E., Camphuysen, K. C. J., & Shamoun-Baranes, J. (2023). Thermal soaring over the North Sea and implications for wind farm interactions. Marine Ecology Progress Series, 723, 185-200. https://doi.org/10.3354/meps14315 [details]
2022
- Baldan, D., & van Loon, E. E. (2022). Songbird parents coordinate offspring provisioning at fine spatio-temporal scales. Journal of Animal Ecology, 91(6), 1316-1326. https://doi.org/10.1111/1365-2656.13702
- Lippert, F., Kranstauber, B., Forré, P. D., & van Loon, E. E. (2022). Learning to predict spatiotemporal movement dynamics from weather radar networks. Methods in Ecology and Evolution, 13(12), 2811-2826. Advance online publication. https://doi.org/10.1111/2041-210X.14007 [details]
- Salvatori, M., De Groeve, J., van Loon, E., De Baets, B., Morellet, N., Focardi, S., Bonnot, N. C., Gehr, B., Griggio, M., Heurich, M., Kroeschel, M., Licoppe, A., Moorcroft, P., Pedrotti, L., Signer, J., Van de Weghe, N., & Cagnacci, F. (2022). Day versus night use of forest by red and roe deer as determined by Corine Land Cover and Copernicus Tree Cover Density: Assessing use of geographic layers in movement ecology. Landscape Ecology, 37(5), 1453–1468. https://doi.org/10.1007/s10980-022-01416-w [details]
2021
- Abcouwer, K., & van Loon, E. (2021). Library inventory using a RFID wand: contribution of tag and book specific factors on the read rate. Library Hi Tech, 39(2), 368-379. Advance online publication. https://doi.org/10.1108/LHT-06-2019-0129 [details]
- Ayllón, D., Railsback, S. F., Gallagher, C., Augusiak, J., Baveco, H., Berger, U., Charles, S., Martin, R., Focks, A., Galic, N., Liu, C., van Loon, E. E., Nabe-Nielsen, J., Piou, C., Polhill, J. G., Preuss, T. G., Radchuk, V., Schmolke, A., Stadnicka-Michalak, J., ... Grimm, V. (2021). Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support. Environmental Modelling and Software, 136, Article 104932. https://doi.org/10.1016/j.envsoft.2020.104932 [details]
- Brown, J. M., van Loon, E. E., Bouten, W., Camphuysen, K. C. J., Lens, L., Müller, W., Thaxter, C. B., & Shamoun-Baranes, J. (2021). Long-distance migrants vary migratory behaviour as much as short-distance migrants: An individual-level comparison from a seabird species with diverse migration strategies. Journal of Animal Ecology, 90(5), 1058-1070. https://doi.org/10.1111/1365-2656.13431 [details]
- Corradini, A., Randles, M., Pedrotti, L., van Loon, E., Passoni, G., Oberosler, V., Rovero, F., Tattoni, C., Ciolli, M., & Cagnacci, F. (2021). Effects of cumulated outdoor activity on wildlife habitat use. Biological Conservation, 253, Article 108818. https://doi.org/10.1016/j.biocon.2020.108818 [details]
- Hammoud, C., Kougioumoutzis, K., Rijsdijk, K. F., Simaiakis, S. M., Norder, S. J., Foufopoulos, J., Georgopoulou, E., & Van Loon, E. E. (2021). Past connections with the mainland structure patterns of insular species richness in a continental-shelf archipelago (Aegean Sea, Greece). Ecology and Evolution, 11(10), 5441-5458. https://doi.org/10.1002/ece3.7438 [details]
- Janmaat, K. R. L., de Guinea, M., Collet, J., Byrne, R. W., Robira, B., van Loon, E., Jang, H., Biro, D., Ramos-Fernández, G., Ross, C., Presotto, A., Allritz, M., Alavi, S., & van Belle, S. (2021). Using natural travel paths to infer and compare primate cognition in the wild. iScience, 24(4), Article 102343. https://doi.org/10.1016/j.isci.2021.102343 [details]
- Mekkes, L., Sepúlveda-Rodríguez, G., Bielkinaitė, G., Wall-Palmer, D., Brummer, G.-JA., Dämmer, L. K., Huisman, J., van Loon, E., Renema, W., & Peijnenburg, K. T. C. A. (2021). Effects of Ocean Acidification on Calcification of the Sub-Antarctic Pteropod Limacina retroversa. Frontiers in Marine Science, 8, Article 581432. https://doi.org/10.3389/fmars.2021.581432 [details]
- Patrick, S. C., Assink, J. D., Basille, M., Clusella-Trullas, S., Clay, T. A., den Ouden, O. F. C., Joo, R., Zeyl, J. N., Benhamou, S., Christensen-Dalsgaard, J., Evers, L. G., Fayet, A. L., Köppl, C., Malkemper, E. P., Martín López, L. M., Padget, O., Phillips, R. A., Prior, M. K., Smets, P. S. M., & van Loon, E. E. (2021). Infrasound as a Cue for Seabird Navigation. Frontiers in Ecology and Evolution, 9, Article 740027. https://doi.org/10.3389/fevo.2021.740027 [details]
- Thomas, C. L., Jansen, B., van Loon, E. E., & Wiesenberg, G. L. B. (2021). Transformation of n-alkanes from plant to soil: a review. Soil, 7(2), 785-809. https://doi.org/10.5194/soil-7-785-2021 [details]
- Wessel, W. W., Boxman, A. W., Cerli, C., van Loon, E. E., & Tietema, A. (2021). Long-term stabilization of 15N-labeled experimental NH4+ deposition in a temperate forest under high N deposition. Science of the Total Environment, 768, Article 144356. https://doi.org/10.1016/j.scitotenv.2020.144356 [details]
- de Vries, J. P. R., van Loon, E., & Borges, P. A. V. (2021). A small-scale analysis of elevational species richness and beta diversity patterns of arthropods on an oceanic island (Terceira, Azores). Insects, 12(10), Article 936. https://doi.org/10.3390/insects12100936
- van Erp, J. A., van Loon, E. E., Camphuysen, K. J., & Shamoun-Baranes, J. (2021). Temporal patterns in offshore bird abundance during the breeding season at the Dutch North Sea coast. Marine Biology, 168(10), Article 150. https://doi.org/10.1007/s00227-021-03954-4 [details]
2020
- Bakx, T. R. M., Lindström, Å., Ram, D., Pettersson, L. B., Smith, H. G., van Loon, E. E., & Caplat, P. (2020). Farmland birds occupying forest clear-cuts respond to both local and landscape features. Forest Ecology and Management, 478, Article 118519. https://doi.org/10.1016/j.foreco.2020.118519 [details]
- Bos, D., van Loon, E. E., Klop, E., & Ydenberg, R. (2020). A Large-Scale Experiment to Evaluate Control of Invasive Muskrats. Wildlife Society Bulletin, 44(2), 314-322. https://doi.org/10.1002/wsb.1099 [details]
- Kroes, R., Van Loon, E. E., Goverse, E., Schiphouwer, M. E., & Van der Geest, H. G. (2020). Attraction of migrating glass eel (Anguilla anguilla) by freshwater flows from water pumping stations in an urbanized delta system. Science of the Total Environment, 714, Article 136818. https://doi.org/10.1016/j.scitotenv.2020.136818 [details]
- Norder, S. J., de Lima, R. F., de Nascimento, L., Lim, J. Y., Fernández-Palacios, J. M., Romeiras, M. M., Elias, R. B., Cabezas, F. J., Catarino, L., Ceríaco, L. M. P., Castilla-Beltrán, A., Gabriel, R., Menezes de Sequeira, M., Rijsdijk, K. F., Nogué, S., Kissling, W. D., van Loon, E. E., Hall, M., Matos, M., & Borges, P. A. V. (2020). Global change in microcosms: Environmental and societal predictors of land cover change on the Atlantic Ocean Islands. Anthropocene, 30, Article 100242. https://doi.org/10.1016/j.ancene.2020.100242 [details]
- Overbeek, C. C., Harpenslager, S. F., van Zuidam, J. P., van Loon, E. E., Lamers, L. P. M., Soons, M. B., Admiraal, W., Verhoeven, J. T. A., Smolders, A. J. P., Roelofs, J. G. M., & van der Geest, H. G. (2020). Drivers of Vegetation Development, Biomass Production and the Initiation of Peat Formation in a Newly Constructed Wetland. Ecosystems, 23(5), 1019-1036. https://doi.org/10.1007/s10021-019-00454-x [details]
- Sevink, J., de Neef, W., Di Vito, M. A., Arienzo, I., Attema, P. A. J., van Loon, E. E., Ullrich, B., den Haan, M., Ippolito, F., & Noorda, N. (2020). A multidisciplinary study of an exceptional prehistoric waste dump in the mountainous inland of Calabria (Italy): Implications for reconstructions of prehistoric land use and vegetation in Southern Italy. Holocene, 30(9), 1310–1331. https://doi.org/10.1177/0959683620919974 [details]
- Shamoun-Baranes, J., Sage, E., van Erp, J., & van Loon, E. (2020). [Review of: M.R. Perrow (2017) Wildlife and wind farms, conflicts and solutions. - v. 1: Onshore: potential effects; M.R. Perrow (2017) Wildlife and wind farms, conflicts and solutions. - v. 2: Onshore: monitoring and mitigation; M.R. Perrow (2019) Wildlife and wind farms, conflicts and solutions. - v. 3: Offshore: potential effects; M.R. Perrow (2019) Wildlife and wind farms, conflicts and solutions. - v. 4: Offshore: Monitoring and mitigation]. Ibis, 162(3), 1097-1099. https://doi.org/10.1111/ibi.12841 [details]
- Veerman, L., Kalbitz, K., Gundersen, P., Kjønaas, J., Moldan, F., Schleppi, P., van Loon, E. E., Schoorl, J., Wessel, W., & Tietema, A. (2020). The long-term fate of deposited nitrogen in temperate forest soils. Biogeochemistry, 150(1), 1-15. https://doi.org/10.1007/s10533-020-00683-6 [details]
2019
- Bart, M. C., de Vet, S. J., de Bakker, D. M., Alexander, B. E., van Oevelen, D., van Loon, E. E., van Loon, J. J. W. A., & de Goeij, J. M. (2019). Spiculous skeleton formation in the freshwater sponge Ephydatia fluviatilis under hypergravity conditions. PeerJ, 6, Article e6055. https://doi.org/10.7717/peerj.6055 [details]
- Konzack, M., Gijsbers, P., Timmers, F., van Loon, E., Westenberg, M. A., & Buchin, K. (2019). Visual exploration of migration patterns in gull data. Information Visualization, 18(1), 138-152. Advance online publication. https://doi.org/10.1177/1473871617751245 [details]
- Muñoz, G., Kissling, W. D., & van Loon, E. E. (2019). Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature. Biodiversity Data Journal, 7, Article e28737. https://doi.org/10.3897/BDJ.7.e28737 [details]
- Norder, S. J., Proios, K., Whittaker, R. J., Alonso, M. R., Borges, P. A. V., Borregaard, M. K., Cowie, R. H., Florens, F. B. V., de Frias Martins, A. M., Ibáñez, M., Kissling, W. D., de Nascimento, L., Otto, R., Parent, C. E., Rigal, F., Warren, B. H., Fernández-Palacios, J. M., van Loon, E. E., Triantis, K. A., & Rijsdijk, K. F. (2019). Beyond the Last Glacial Maximum: Island endemism is best explained by long-lasting archipelago configurations. Global Ecology and Biogeography, 28(2), 184-197. https://doi.org/10.1111/geb.12835 [details]
- Overbeek, C. C., van der Geest, H. G., van Loon, E. E., & Admiraal, W. (2019). Decomposition of Standing Litter Biomass in Newly Constructed Wetlands Associated with Direct Effects of Sediment and Water Characteristics and the Composition and Activity of the Decomposer Community Using Phragmites australis as a Single Standard Substrate. Wetlands, 39(1), 113-125. https://doi.org/10.1007/s13157-018-1081-y [details]
- Overbeek, C. C., van der Geest, H. G., van Loon, E. E., Klink, A. D., van Heeringen, S., Harpenslager, S. F., & Admiraal, W. (2019). Corrigendum to “Decomposition of aquatic pioneer vegetation in newly constructed wetlands” [Ecol. Eng. 114 (2018) 154–161]. Ecological Engineering, 131, 133-134. https://doi.org/10.1016/j.ecoleng.2019.01.021
- Thomas, C. L., Jansen, B., Van Loon, E. E., & Wiesenberg, G. L. B. (2019). Improved source apportionment of soil and sediment organic matter using inverse modeling of biomarker composition (VERHIB 2.0). In 29th International Meeting on Organic Geochemistry (IMOG): 1-6 September 2019, Gothenburg, Sweden (Conference Proceedings EarthDoc). European Association of Geoscientists & Engineers. https://doi.org/10.3997/2214-4609.201902996 [details]
2018
- Golding, N., August, T. A., Lucas, T. C. D., Gavaghan, D. J., van Loon, E. E., & Mcinerny, G. (2018). The zoon r package for reproducible and shareable speciesdistribution modelling. Methods in Ecology and Evolution, 9(2), 260-268. https://doi.org/10.1111/2041-210X.12858 [details]
- Heinen, J. H., van Loon, E. E., Hansen, D. M., & Kissling, W. D. (2018). Extinction-driven changes in frugivore communities on oceanic islands. Ecography, 41(8), 1245–1255. Advance online publication. https://doi.org/10.1111/ecog.03462 [details]
- Mantzouki, E., Campbell, J., van Loon, E., Visser, P., Konstantinou, I., Antoniou, M., Giuliani, G., Machado-Vieira, D., Gurjão de Oliveira, A., Špoljarić Maronić, D., Stević, F., Žuna Pfeiffer, T., Bokan Vucelić, I., Žutinić, P., Gligora Udovič, M., Plenković-Moraj, A., Tsiarta, N., Bláha, L., Geriš, R., ... Ibelings, B. W. (2018). A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins. Scientific Data, 5, Article 180226. https://doi.org/10.1038/sdata.2018.226 [details]
- McLaren, J. D., Buler, J. J., Schreckengost, T., Smolinsky, J. A., Boone, M., van Loon, E. E., Dawson, D. K., & Walters, E. L. (2018). Artificial light at night confounds broad-scale habitat use by migrating birds. Ecology Letters, 21(3), 356-364. https://doi.org/10.1111/ele.12902 [details]
- Norder, S. J., Baumgartner, J. B., Borges, P. A. V., Hengl, T., Kissling, W. D., van Loon, E. E., & Rijsdijk, K. F. (2018). A global spatially explicit database of changes in island paleo-area and archipelago configuration during the late Quaternary. Global Ecology and Biogeography, 27(5), 500–505. https://doi.org/10.1111/geb.12715 [details]
- Overbeek, C. C., van der Geest, H. G., van Loon, E. E., Klink, A. D., van Heeringen, S., Harpenslager, S. F., & Admiraal, W. (2018). Decomposition of aquatic pioneer vegetation in newly constructed wetlands. Ecological Engineering, 114, 154-161. https://doi.org/10.1016/j.ecoleng.2017.06.046 [details]
- Padget, O., Bond, S. L., Kavelaars, M. M., van Loon, E., Bolton, M., Fayet, A. L., Syposz, M., Roberts, S., & Guilford, T. (2018). In Situ Clock Shift Reveals that the Sun Compass Contributes to Orientation in a Pelagic Seabird. Current Biology, 28(2), 275-279.e2. https://doi.org/10.1016/j.cub.2017.11.062 [details]
- Westveer, J. J., van der Geest, H. G., van Loon, E. E., & Verdonschot, P. F. M. (2018). Connectivity and seasonality cause rapid taxonomic and functional trait succession within an invertebrate community after stream restoration. PLoS ONE, 13(5), Article e0197182. https://doi.org/10.1371/journal.pone.0197182 [details]
- Yang, S., Cammeraat, E., Jansen, B., den Haan, M., van Loon, E., & Recharte, J. (2018). Soil organic carbon stocks controlled by lithology and soil depth in a Peruvian alpine grassland of the Andes. Catena, 171, 11-21. https://doi.org/10.1016/j.catena.2018.06.038 [details]
2017
- Dokter, A. M., van Loon, E. E., Fokkema, W., Lameris, T. K., Nolet, B. A., & van der Jeugd, H. P. (2017). Analyzing time-ordered event data with missed observations. Ecology and Evolution, 7(18), 7362-7369. https://doi.org/10.1002/ece3.3281 [details]
- Dokter, A. M., van Loon, E. E., Rappoldt, C., Oosterbeek, K., Baptist, M. J., Bouten, W., & Ens, B. J. (2017). Balancing food and density-dependence in the spatial distribution of an interference-prone forager. Oikos, 126(8), 1184-1196. https://doi.org/10.1111/oik.04139 [details]
- Muluneh, A., van Loon, E., Bewket, W., Keesstra, S., Stroosnijder, L., & Burka, A. (2017). Effects of long-term deforestation and remnant forests on rainfall and temperature in the Central Rift Valley of Ethiopia. Forest Ecosystems, 4, Article 23. https://doi.org/10.1186/s40663-017-0109-8 [details]
- Norder, S. J., Seijmonsbergen, A. C., Rughooputh, S. D. D. V., van Loon, E. E., Tatayah, V., Kamminga, A. T., & Rijsdijk, K. F. (2017). Assessing temporal couplings in social–ecological island systems: historical deforestation and soil loss on Mauritius (Indian Ocean). Ecology and Society, 22(1), Article 29. https://doi.org/10.5751/ES-09073-220129 [details]
- Serna-Chavez, H. M., Swenson, N. G., Weiser, M. D., van Loon, E. E., Bouten, W., Davidson, M. D., & van Bodegom, P. M. (2017). Strong biotic influences on regional patterns of climate regulation services. Global Biogeochemical Cycles, 31(5), 787-803. https://doi.org/10.1002/2017GB005627 [details]
- Shamoun-Baranes, J., Burant, J. B., van Loon, E. E., Bouten, W., & Camphuysen, C. J. (2017). Short distance migrants travel as far as long distance migrants in lesser black‐backed gulls Larus fuscus. Journal of Avian Biology, 48(1), 49-57. https://doi.org/10.1111/jav.01229 [details]
- Simaiakis, S. M., Rijsdijk, K. F., Koene, E. F. M., Norder, S. J., Van Boxel, J. H., Stocchi, P., Hammoud, C., Kougioumoutzis, K., Georgopoulou, E., Van Loon, E., Tjørve, K. M. C., & Tjørve, E. (2017). Geographic changes in the Aegean Sea since the Last Glacial Maximum: Postulating biogeographic effects of sea-level rise on islands. Palaeogeography, Palaeoclimatology, Palaeoecology, 471, 108-119. https://doi.org/10.1016/j.palaeo.2017.02.002 [details]
- Slingsby, A., & van Loon, E. (2017). Visual Characterisation of Temporal Occupancy for Movement Ecology. In D. Fellner (Ed.), EnvirVis 2017 - Workshop on Visualisation in Environmental Sciences (pp. 13-17). (EnvirVis 2017 - Workshop on Visualisation in Environmental Sciences). The Eurographics Association. https://doi.org/10.2312/envirvis.20171098 [details]
- Tyson, C., Kirk, H., Fayet, A., Van Loon, E. E., Shoji, A., Dean, B., Perrins, C., Freeman, R., & Guilford, T. (2017). Coordinated provisioning in a dual-foraging pelagic seabird. Animal behaviour, 132, 73-79. https://doi.org/10.1016/j.anbehav.2017.07.022 [details]
- van Loon, E. E., Bos, D., van Hellenberg Hubar, C. J., & Ydenberg, R. C. (2017). A historical perspective on the effects of trapping and controlling the muskrat (Ondatra zibethicus) in the Netherlands. Pest Management Science, 73(2), 305-312. Advance online publication. https://doi.org/10.1002/ps.4270 [details]
2016
- Lezama-Ochoa, N., Murua, H., Chust, G., Van Loon, E., Ruiz, J., Hall, M., Chavance, P., Delgado De Molina, A., & Villarino, E. (2016). Present and Future Potential Habitat Distribution of Carcharhinus falciformis and Canthidermis maculata By-Catch Species in the Tropical Tuna Purse-Seine Fishery under Climate Change. Frontiers in Marine Science, 3, Article 34. https://doi.org/10.3389/fmars.2016.00034 [details]
- Shamoun-Baranes, J., Bouten, W., van Loon, E. E., Meijer, C., & Camphuysen, C. J. (2016). Flap or soar? How a flight generalist responds to its aerial environment. Philosophical Transactions of the Royal Society B - Biological Sciences, 371(1704), Article 20150395. Advance online publication. https://doi.org/10.1098/rstb.2015.0395 [details]
- Slingsby, A., & van Loon, E. (2016). Exploratory Visual Analysis for Animal Movement Ecology. Computer Graphics Forum, 35(3), 471-480. https://doi.org/10.1111/cgf.12923 [details]
- Tonneijck, F. H., Velthuis, M., Bouten, W., van Loon, E. E., Sevink, J., & Verstraten, J. M. (2016). The effect of change in soil volume on organic matter distribution in a volcanic ash soil. European Journal of Soil Science, 67(2), 226-236. https://doi.org/10.1111/ejss.12329 [details]
- Villegas, S. S., van Soelen, E. E., Teunissen van Manen, M. L., Flantua, S. G. A., Santos, R. V., Roddaz, M., Dantas, E. L., van Loon, E., Sinninghe Damste, J. S., Kim, J-H., & Hoorn, C. (2016). Amazon forest dynamics under changing abiotic conditions in the early Miocene (Colombian Amazonia). Journal of Biogeography, 43(12), 2424-2437. https://doi.org/10.1111/jbi.12769 [details]
2015
- Aguirre-Gutiérrez, J., Biesmeijer, J. C., van Loon, E. E., Reemer, M., WallisDeVries, M. F., & Carvalheiro, L. G. (2015). Susceptibility of pollinators to ongoing landscape changes depends on landscape history. Diversity and distributions, 21(10), 1129-1140. https://doi.org/10.1111/ddi.12350 [details]
- Buchin, K., Sijben, S., van Loon, E. E., Sapir, N., Mercier, S., Arseneau, T. J. M., & Willems, E. P. (2015). Deriving movement properties and the effect of the environment from the Brownian bridge movement model in monkeys and birds. Movement Ecology, 3, Article 18. https://doi.org/10.1186/s40462-015-0043-8 [details]
- Burns, Z. T., & van Loon, E. E. (2015). A framework to classify error in animal-borne technologies. Frontiers in Ecology and Evolution, 3, Article 55. https://doi.org/10.3389/fevo.2015.00055 [details]
- Camphuysen, K. C. J., Shamoun-Baranes, J., van Loon, E. E., & Bouten, W. (2015). Sexually distinct foraging strategies in an omnivorous seabird. Marine Biology, 162(7), 1417-1428. Advance online publication. https://doi.org/10.1007/s00227-015-2678-9 [details]
- Cusell, C., Mettrop, I. S., van Loon, E. E., Lamers, L. P. M., Vorenhout, M., & Kooijman, A. M. (2015). Impacts of short-term droughts and inundations in species-rich fens during summer and winter: Large-scale field manipulation experiments. Ecological Engineering, 77, 127-138. https://doi.org/10.1016/j.ecoleng.2015.01.025 [details]
- Meier, R. E., Wynn, R. B., Votier, S. C., McMinn Grivé, M., Rodríguez, A., Maurice, L., van Loon, E. E., Jones, A. R., Suberg, L., Arcos, J. M., Morgan, G., Josey, S. A., & Guilford, T. (2015). Consistent foraging areas and commuting corridors of the critically endangered Balearic shearwater Puffinus mauretanicus in the northwestern Mediterranean. Biological Conservation, 190, 87-97. https://doi.org/10.1016/j.biocon.2015.05.012 [details]
- Nesterova, A. P., Flack, A., van Loon, E. E., Bonadonna, F., & Biro, D. (2015). The effect of experienced individuals on navigation by king penguin chick pairs. Animal behaviour, 104, 69-78. https://doi.org/10.1016/j.anbehav.2015.03.008 [details]
- Taylor-King, J. P., van Loon, E. E., Rosser, G., & Chapman, S. J. (2015). From Birds to Bacteria: Generalised Velocity Jump Processes with Resting States. Bulletin of Mathematical Biology, 77(7), 1213-1236. https://doi.org/10.1007/s11538-015-0083-7 [details]
- Tyson, C., Shamoun-Baranes, J., van Loon, E. E., Camphuysen, C. J., & Hintzen, N. T. (2015). Individual specialization on fishery discards by lesser black-backed gulls (Larus fuscus). ICES Journal of Marine Science, 76(6), 1882-1891. Advance online publication. https://doi.org/10.1093/icesjms/fsv021 [details]
- Vansteelant, W. M. G., Bouten, W., Klaassen, R. H. G., Koks, B. J., Schlaich, A. E., van Diermen, J., van Loon, E. E., & Shamoun-Baranes, J. (2015). Regional and seasonal flight speeds of soaring migrants and the role of weather at hourly and daily scales. Journal of Avian Biology, 46(1), 25-39. Advance online publication. https://doi.org/10.1111/jav.00457 [details]
- van Andel, T. R., Croft, S., van Loon, E. E., Quiroz, D., Towns, A. M., & Raes, N. (2015). Prioritizing West African medicinal plants for conservation and sustainable extraction studies based on market surveys and species distribution models. Biological Conservation, 181, 173-181. https://doi.org/10.1016/j.biocon.2014.11.015 [details]
2014
- Alexander, B. E., Liebrand, K., Osinga, R., van der Geest, H. G., Admiraal, W., Cleutjens, J. P. M., Schutte, B., Verheyen, F., Ribes, M., van Loon, E., & de Goeij, J. M. (2014). Cell turnover and detritus production in marine sponges from tropical and temperate benthic ecosystems. PLoS ONE, 9(10), e109486. Advance online publication. https://doi.org/10.1371/journal.pone.0109486 [details]
- Cusell, C., Kooijman, A., Fernandez, F., van Wirdum, G., Geurts, J. J. M., van Loon, E. E., Kalbitz, K., & Lamers, L. P. M. (2014). Filtering fens: Mechanisms explaining phosphorus-limited hotspots of biodiversity in wetlands adjacent to heavily fertilized areas. Science of the Total Environment, 481, 129-141. https://doi.org/10.1016/j.scitotenv.2014.02.032 [details]
- Demšar, U., Buchin, K., van Loon, E. E., & Shamoun-Baranes, J. (2014). Stacked space-time densities: a geovisualisation approach to explore dynamics of space use over time. GeoInformatica, 19(1), 85-115. https://doi.org/10.1007/s10707-014-0207-5 [details]
- Goldenberg Vilar, A., van Dam, H., van Loon, E. E., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Eutrophication decreases distance decay of similarity in diatom communities. Freshwater Biology, 59(7), 1522-1531. https://doi.org/10.1111/fwb.12363 [details]
- Kopittke, G. R., Tietema, A., van Loon, E., & Asscheman, D. (2014). Fourteen Annually Repeated Droughts Suppressed Autotrophic Soil Respiration and Resulted in an Ecosystem Change. Ecosystems, 17(2), 242-257. Advance online publication. https://doi.org/10.1007/s10021-013-9720-x [details]
- Nesterova, A. P., Flack, A., van Loon, E. E., Marescot, Y., Bonadonna, F., & Biro, D. (2014). Resolution of navigational conflict in king penguin chicks. Animal behaviour, 93, 221-228. https://doi.org/10.1016/j.anbehav.2014.04.031 [details]
- Rijsdijk, K. F., Hengl, T., Norder, S. J., Otto, R., Emerson, B. C., Ávila, M. A., López, H., van Loon, E. E., Tjørve, E., & Fernández-Palacios, J. M. (2014). Quantifying surface-area changes of volcanic islands driven by Pleistocene sea-level cycles: biogeographical implications for the Macaronesian archipelagos. Journal of Biogeography, 41(7), 1242-1254. https://doi.org/10.1111/jbi.12336 [details]
- Vansteelant, W. M. G., Verhelst, B., Shamoun-Baranes, J., Bouten, W., van Loon, E. E., & Bildstein, K. L. (2014). Effect of wind, thermal convection, and variation in flight strategies on the daily rhythm and flight paths of migrating raptors at Georgia's Black Sea coast. Journal of Field Ornithology, 85(1), 40-55. Advance online publication. https://doi.org/10.1111/jofo.12048 [details]
- Vicca, S., Bahn, M., Estiarte, M., van Loon, E. E., Vargas, R., Alberti, G., Ambus, P., Arlain, M. A., Beier, C., Bentley, L. P., Borken, W., Buchmann, N., Collins, S. L., De Dato, G., Dukes, J. S., Escolar, C., Fay, P., Guidolotti, G., Hanson, P. J., ... Janssens, I. A. (2014). Can current moisture responses predict soil CO2 efflux under altered precipitation regimes? A synthesis of manipulation experiments. Biogeosciences, 11(11), 2991-3013. https://doi.org/10.5194/bg-11-2991-2014 [details]
- Whatley, M. H., van Loon, E. E., Cerli, C., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Linkages between benthic microbial and feshwater insect communities in degraded peatland ditches. Ecological Indicators, 46, 415-425. https://doi.org/10.1016/j.ecolind.2014.06.031 [details]
- Whatley, M. H., van Loon, E. E., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). The role of emergent vegetation in structuring aquatic insect communities in peatland drainage ditches. Aquatic Ecology, 48, 267-283. https://doi.org/10.1007/s10452-014-9482-3 [details]
- Whatley, M. H., van Loon, E., van Dam, H., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2014). Macrophyte loss drives decadal change in benthic invertebrates in peatland drainage ditches. Freshwater Biology, 59(1), 114-126. https://doi.org/10.1111/fwb.12252 [details]
- de Vet, S. J., Merrison, J. P., Mittelmeijer-Hazeleger, M. C., van Loon, E. E., & Cammeraat, L. H. (2014). Effects of rolling on wind-induced detachment thresholds of volcanic glass on Mars. Planetary and Space Science, 103, 205-218. https://doi.org/10.1016/j.pss.2014.07.012 [details]
2013
- Aguirre-Gutiérrez, J., Carvalheiro, L. G., Polce, C., van Loon, E. E., Raes, N., Reemer, M., & Biesmeijer, J. C. (2013). Fit-for-purpose: species distribution model performance depends on evaluation criteria -Dutch hoverflies as a case study. PLoS ONE, 8(5), Article e63708. https://doi.org/10.1371/journal.pone.0063708 [details]
- Dokter, A. M., Baptist, M. J., Ens, B. J., Krijgsveld, K. L., & van Loon, E. (2013). Bird radar validation in the field by time-referencing line-transect surveys. PLoS ONE, 8, e74129. https://doi.org/10.1371/journal.pone.0074129 [details]
- Fleischer, K., Rebel, K. T., van der Molen, M. K., Erisman, J. W., Wassen, M. J., van Loon, E. E., Montagnani, L., Gough, C. M., Herbst, M., Janssens, I. A., Gianelle, D., & Dolman, A. J. (2013). The contribution of nitrogen deposition to the photosynthetic capacity of forests. Global Biogeochemical Cycles, 27(1), 187-199. https://doi.org/10.1002/gbc.20026 [details]
- Kemp, M. U., Shamoun-Baranes, J., Dokter, A. M., van Loon, E., & Bouten, W. (2013). The influence of weather on the flight altitude of nocturnal migrants in mid-latitudes. Ibis, 155(4), 734-749. https://doi.org/10.1111/ibi.12064 [details]
- Kopittke, G. R., Tietema, A., van Loon, E. E., & Kalbitz, K. (2013). The Age of Managed Heathland Communities: Implications for Carbon Storage? Plant and Soil, 369(1-2), 219-230. https://doi.org/10.1007/s11104-012-1558-z [details]
- Kopittke, G. R., van Loon, E. E., Tietema, A., & Asscheman, D. (2013). Soil Respiration on an Aging Managed Heathland: Identifying an Appropriate Empirical Model for Predictive Purposes. Biogeosciences, 10, 3007-3038. https://doi.org/10.5194/bg-10-3007-2013 [details]
- Slingsby, A., & van Loon, E. (2013). Visual Analytics for Exploring Changes in Biodiversity. In O. Kolditz, K. Rink, & G. Scheuermann (Eds.), EnvirVis13: Workshop on Visualisation in Environmental Sciences The Eurographics Association. https://doi.org/10.2312/PE.EnvirVis.EnvirVis13.071-075 [details]
2012
- Kemp, M. U., Shamoun-Baranes, J., van Loon, E. E., McLaren, J. D., Dokter, A. M., & Bouten, W. (2012). Quantifying flow-assistance and implications for movement research. Journal of Theoretical Biology, 308, 56-67. https://doi.org/10.1016/j.jtbi.2012.05.026 [details]
- Kemp, M. U., van Loon, E. E., Shamoun-Baranes, J., & Bouten, W. (2012). RNCEP: global weather and climate data at your fingertips. Methods in Ecology and Evolution, 3, 65-70. https://doi.org/10.1111/j.2041-210X.2011.00138.x [details]
- Klotzbücher, T., Kaiser, K., Stepper, C., van Loon, E., Gerstberger, P., & Kalbitz, K. (2012). Long-term litter input manipulation effects on production and properties of dissolved organic matter in the forest floor of a Norway spruce stand. Plant and Soil, 355(1-2), 407-416. https://doi.org/10.1007/s11104-011-1123-1 [details]
- Shamoun-Baranes, J., Bom, R., van Loon, E. E., Ens, B. J., Oosterbeek, K., & Bouten, W. (2012). From sensor data to animal behaviour: an oystercatcher example. PLoS ONE, 7(5), e37997. Article e37997. https://doi.org/10.1371/journal.pone.0037997 [details]
- Shamoun-Baranes, J., van Loon, E. E., Purves, R. S., Speckmann, B., Weiskopf, D., & Camphuysen, C. J. (2012). Analysis and visualization of animal movement. Biology Letters, 8, 6-9. https://doi.org/10.1098/rsbl.2011.0764 [details]
- Veen, L. E., van Reenen, G. B. A., Sluiter, F. P., van Loon, E. E., & Bouten, W. (2012). A semantically integrated, user-friendly data model for species observation data. Ecological Informatics, 8, 1-9. Advance online publication. https://doi.org/10.1016/j.ecoinf.2011.11.002 [details]
2011
- Shamoun-Baranes, J., Dokter, A. M., van Gasteren, H., van Loon, E. E., van Leijnse, H., & Bouten, W. (2011). Birds flee en mass from New Year's Eve fireworks. Behavioral Ecology, 22(6), 1173-1177. https://doi.org/10.1093/beheco/arr102 [details]
- van Loon, E. E., Shamoun-Baranes, J., Bouten, W., & Davis, S. L. (2011). Understanding soaring bird migration through interactions and decisions at the individual level. Journal of Theoretical Biology, 270(1), 112-126. https://doi.org/10.1016/j.jtbi.2010.10.038 [details]
- van Strien, A. J., Dekker, J. J. A., Straver, M., van der Meij, T., Soldaat, L. L., Ehrenburg, A., & van Loon, E. (2011). Occupancy dynamics of wild rabbits (Oryctolagus cuniculus) in the coastal dunes of the Netherlands with imperfect detection. Wildlife Research, 38(8), 717-725. https://doi.org/10.1071/WR11050 [details]
2010
- Hengl, T., Heuvelink, G. B. M., & van Loon, E. E. (2010). On the uncertainty of stream networks derived from elevation data: the error propagation approach. Hydrology and Earth System Sciences, 14(7), 1153-1165. https://doi.org/10.5194/hess-14-1153-2010 [details]
- Jansen, B., van Loon, E. E., Hooghiemstra, H., & Verstraten, J. M. (2010). Improved reconstruction of palaeo-environments through unravelling of preserved vegetation biomarker patterns. Palaeogeography, Palaeoclimatology, Palaeoecology, 285(1-2), 119-130. https://doi.org/10.1016/j.palaeo.2009.10.029 [details]
- Kemp, M. U., Shamoun-Baranes, J., van Gasteren, H., Bouten, W., & van Loon, E. E. (2010). Can wind help explain seasonal differences in avian migration speed? Journal of Avian Biology, 41(6), 672-677. https://doi.org/10.1111/j.1600-048X.2010.05053.x [details]
- Shamoun-Baranes, J., Bouten, W., & van Loon, E. E. (2010). Integrating meteorology into research on migration. Integrative and Comparative Biology, 50(3), 280-292. https://doi.org/10.1093/icb/icq011 [details]
- Shamoun-Baranes, J., Leyrer, J., van Loon, E., Bocher, P., Robin, F., Meunier, F., & Piersma, T. (2010). Stochastic atmospheric assistance and the use of emergency staging sites by migrants. Proceedings of the Royal Society B-Biological Sciences, 277, 1505-1511. https://doi.org/10.1098/rspb.2009.2112 [details]
- Sheikh, V., van Loon, E., Hessel, R., & Jetten, V. (2010). Sensitivity of LISEM predicted catchment discharge to initial soil moisture content of soil profile. Journal of Hydrology, 393(3-4), 174-185. https://doi.org/10.1016/j.jhydrol.2010.08.016 [details]
2009
- Fillinger, U., Sombroek, H., Majambere, S., van Loon, E., Takken, W., & Linsay, S. W. (2009). Identifying the most productive breeding sites for malaria mosquitoes in The Gambia. Malaria Journal, 8, 62. https://doi.org/10.1186/1475-2875-8-62 [details]
- Raes, N., Roos, M. C., Slik, J. W. F., van Loon, E. E., & ter Steege, H. (2009). Botanical richness and endemicity patterns of Borneo derived from species distribution models. Ecography, 32(1), 180-192. https://doi.org/10.1111/j.1600-0587.2009.05800.x [details]
2008
- Hengl, T., van Loon, E. E., Shamoun-Baranes, J., & Bouten, W. (2008). Geostatistical analysis of GPS trajectory data: Space-time densities. In J. Zhang, & M. F. Goodchild (Eds.), Proceedings of the 8th International Symposium on Spatial Accuracy Assessment in Natural Resources and Environmental Sciences: Shanghai, China, June 25-27, 2008: Volume 1: Spatial uncertainty (pp. 17-24). World Academic Press. http://www.spatial-accuracy.org/2008/PDF/Hengl2008accuracy.pdf [details]
- Hengl, T., van Loon, E., Sierdsema, H., & Bouten, W. (2008). Advancing spatio-temporal analysis of ecological data: Examples in R. In O. Gervasi, B. Murgante, A. Laganà, D. Taniar, Y. Mun, & M. L. Gavrilova (Eds.), Computational Science and Its Applications – ICCSA 2008: International Conference, Perugia, Italy, June 30 – July 3, 2008 : proceedings (Vol. I, pp. 692-707). (Lecture Notes in Computer Science; Vol. 5072). Springer. https://doi.org/10.1007/978-3-540-69839-5_51 [details]
- Marijnissen, S. A. E., Michel, E., Kamermans, M., Olaya-Bosch, K., Kars, M., Cleary, D. F. R., van Loon, E. E., Rachello Dolmen, P. G., & Menken, S. B. J. (2008). Ecological correlates of species differences in the Lake Tanganyika crab radiation. Hydrobiologia, 615(1), 81-94. https://doi.org/10.1007/s10750-008-9566-y [details]
- Shamoun-Baranes, J., Bouten, W., Buurma, L., DeFusco, R., Dekker, A., Sierdsema, H., Sluiter, F., van Belle, J., van Gasteren, H., & van Loon, E. (2008). Avian information systems: Developing web-based bird avoidance models. Ecology and Society, 13(2), Article 38. http://www.ecologyandsociety.org/vol13/iss2/art38/ [details]
- Sierdsema, H., & van Loon, E. E. (2008). Filling the gaps: Using count survey data to predict bird density distribution patterns and estimate population sizes. Revista Catalana d’Ornitologia, 24, 88-99. https://ornitologia.org/ca/queoferim/divulgacio/publicacions/rco/24_088_099.pdf [details]
- Zaugg, S., Saporta, G., van Loon, E., Schmaljohann, H., & Liechti, F. (2008). Automatic identification of bird targets with radar via patterns produced by wing flapping. Journal of the Royal Society Interface, 5(26), 1041-1053. https://doi.org/10.1098/rsif.2007.1349 [details]
- van Gasteren, H., Holleman, I., Bouten, W., van Loon, E., & Shamoun-Baranes, J. (2008). Extracting bird migration information from C-band Doppler weather radars. Ibis, 150(4), 674-686. https://doi.org/10.1111/j.1474-919X.2008.00832.x [details]
- van Meeteren, M. J. M., Tietema, A., van Loon, E. E., & Verstraten, J. M. (2008). Microbial dynamics and litter decomposition under a changed climate in a Dutch heathland. Applied Soil Ecology, 38(2), 119-127. https://doi.org/10.1016/j.apsoil.2007.09.006 [details]
2016
- Simaiakis, S. M., Rijsdijk, K. F., Koene, E. F. M., van Boxel, J. H., Stocchi, P., van Loon, E. E., Hammoud, C., Norder, S. J., Georgopoulou, E., Triantis, K. A., & Tjørve, E. (2016). Quantifying palaeogeographical rates of changes of continental islands in the Aegean Sea by sea level rise: Towards a novel framework for assessing biogeographical implications of palaeogeographical change. Arquipelago : life and marine sciences, Supplement 9, 212. https://islandlab.uac.pt/news/ver.php?id=39
2011
- Ordóñez, A., van Loon, E., & Bouten, W. (2011). Effects of population variability on the accuracy of detection probability estimates. Anales de Biología, 33, 149-160. http://www.um.es/analesdebiologia/numeros/33/PDF/33_2011_17.pdf [details]
2020
- Bouten, W., Kleyheeg-Hartman, J., Klop, E., Potiek, A., Shinneman, S., & van Loon, E. (2020). Haalbaarheidsstudie naar een voorspellend vogeltrekmodel en een stilstandvoorziening om vogelsterfte te beperken in Windpark Eemshaven. Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam. https://www.provinciegroningen.nl/fileadmin/user_upload/Documenten/Downloads/Downloads_2020/Integratierapport_trekvogels_Eemshaven.pdf [details]
- Shinneman, S. M., van Loon, E. E., Wijers, B. C., & Bouten, W. (2020). Prediction and measurement of high intensity bird migration using meteorological radar data in Eemshaven windpark. Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam. https://www.provinciegroningen.nl/fileadmin/user_upload/Documenten/Downloads/Downloads_2020/Rapport_UvA_voorspellen_en_metingen_intensieve_vogeltrek_met_de_weerradar.pdf [details]
2017
- van Boxel, J. H., Brandts, E. B., Flantua, S. G. A., Grimm, E. C., Hooghiemstra, H., & van Loon, E. E. (2017). Data description for the DANS project: Disclosure of paleoecological datasets of IBED, FNWI, UvA. DANS. https://doi.org/10.17026/dans-zg3-b2jf [details]
- van Boxel, J. H., Brandts, E. B., Grimm, E., Flantua, S. G. A., Hooghiemstra, H., & van Loon, E. E. (2017). Kleine Data Projecten - Eindrapportage: Ontsluiting van paleoecologische datasets van IBED, FNWI, UvA. DANS. [details]
2013
- Demšar, U., & van Loon, E. E. (2013). Visualising movement: The seagull. Significance, 10(5), 40-42. https://doi.org/10.1111/j.1740-9713.2013.00698.x
2012
- Norder, S., Rijsdijk, K. F., Seijmonsbergen, H., van Loon, E., Rughooputh, S., & Kamminga, T. (2012). Vruchtbare bodems van Mauritius verdwijnen in zee. Geografie, 21(4), 34-36. http://www.geografie.nl/fileadmin/geografie/Geografie_PDF/1204_april/120410_norder_mauritius.pdf [details]
2016
- Sterk, H. P., Seijmonsbergen, A. C., de Jong, M. G. G., & van Loon, E. E. (2016). Progress in digital mapping of shallow mass movements by using a combination of orthophotos, LiDAR- and UAV-derived information. 319. Abstract from GeoTirol 2016, Innsbruck, Austria. https://www.uibk.ac.at/geologie/geotirol2016-pangeo/images/abstractvolume.pdf
2012
- Whatley, M. H., van Loon, E. E., van Dam, H., Vonk, J. A., van der Geest, H. G., & Admiraal, W. (2012). Vegetation governs aquatic invertebrate composition in agricultural peatlands. Paper presented at New Zealand Freshwater Sciences Society Conference.
Journal editor
- van Loon, E. (reviewer) (2016). Scientific Data (Journal).
2024
- Bol, R. A., van Loon, E. ., Tietema, A. & de Nijs, E. A. (17-9-2024). Evaluating rose yield responses to compost treatments: Data from an 18-month field study in Kenya. Zenodo. https://doi.org/10.5281/zenodo.13772892
- Ydenberg, R., Van Loon, E., Bos, D. & Van Hemert, H. (2024). Replication Data for: Damage to dykes and levees in The Netherlands is extensive and increases with Muskrat (Ondatra zibethicus) density. DataverseNL. https://doi.org/10.34894/fjr2s8
2023
- van Erp, J. A., De Groeve, J., van Loon, E., Shamoun-Baranes, J. & Bradarić, M. (23-10-2023). Data and script for "A framework for post-processing bird tracks from automated tracking radar systems". Universiteit van Amsterdam. https://doi.org/10.21942/uva.22567918.v1
- Linssen, H. J., van Loon, E., Shamoun-Baranes, J., Nuijten, R. J. M. & Nolet, B. (5-10-2023). Data and scripts for "Migratory swans individually adjust their autumn migration and winter range to a warming climate". Universiteit van Amsterdam. https://doi.org/10.21942/uva.24083703.v1
- Kalb, S., Rijsdijk, K., De Groeve, J., Denkers, L., van Loon, E. & Foufopoulos, J. (18-9-2023). Present day and paleo ecological distributions of reptiles in the Aegean and Ionian seas. Universiteit van Amsterdam. https://doi.org/10.21942/uva.23284868.v1
- Kalb, S., Rijsdijk, K., Denkers, L. M., van Loon, E. E., Foufopoulos, J. & De Groeve, J. (18-9-2023). Reproduction Package Kalb et al. 2023. Universiteit van Amsterdam. https://doi.org/10.21942/uva.23284787.v3
- Mumme, S., Middleton, A. D., Ciucci, P., De Groeve, J., Corradini, A., Aikens, E. O., Ossi, F., Atwood, P., Balkenhol, N., Cole, E. K., Debeffe, L., Dewey, S. R., Fischer, C., Gude, J., Heurich, M., Hurley, M. A., Jarnemo, A., Kauffman, M. J., Licoppe, A., … Cagnacci, F. (12-6-2023). Dataset - Mumme et al. 2023 Global Change Biology. Zenodo. https://doi.org/10.5281/zenodo.7919725
- De Groeve, J., Salvatori, M., van Loon, E., De Baets , B., Morellet, N., Focardi, S., Griggio, M., Moorcroft, P., Bonnot, N. C., Gehr, B., Heurich, M., Kroeschel, M., Licoppe, A., Pedrotti, L., Signer, J., Van de Weghe, N. & Cagnacci, F. (2023). Data from: Day versus night use of forest by red and roe deer as determined by Corine Land Cover and Copernicus Tree Cover Density: assessing use of geographic layers in movement ecology. Zenodo. https://doi.org/10.5281/zenodo.7625970
- Kroes, R., Winkel, Y., Breeuwer, J. A. J., van Loon, E. E., Loader, S. P., Maclaine, J. S., Verdonschot, P. F. M. & van der Geest, H. G. (2023). Additional file 3 of Phylogenetic analysis of museum specimens of houting Coregonus oxyrinchus shows the need for a revision of its extinct status. Figshare. https://doi.org/10.6084/m9.figshare.24202735.v1
- Kroes, R., Winkel, Y., Breeuwer, J. A. J., van Loon, E. E., Loader, S. P., Maclaine, J. S., Verdonschot, P. F. M. & van der Geest, H. G. (2023). Additional file 1 of Phylogenetic analysis of museum specimens of houting Coregonus oxyrinchus shows the need for a revision of its extinct status. Figshare. https://doi.org/10.6084/m9.figshare.24202729.v1
- Kroes, R., Winkel, Y., Breeuwer, J. A. J., van Loon, E. E., Loader, S. P., Maclaine, J. S., Verdonschot, P. F. M. & van der Geest, H. G. (2023). Additional file 2 of Phylogenetic analysis of museum specimens of houting Coregonus oxyrinchus shows the need for a revision of its extinct status. Figshare. https://doi.org/10.6084/m9.figshare.24202732.v1
2022
- Lippert, F., Kranstauber, B., Forré, P. & van Loon, E. . (2022). Data from: Learning to predict spatio-temporal movement dynamics from static sensor networks. Zenodo. https://doi.org/10.5281/zenodo.6364941
- Lippert, F., Kranstauber, B., Forré, P. & van Loon, E. . (2022). Data from: Learning to predict spatio-temporal movement dynamics from weather radar networks. Zenodo. https://doi.org/10.5281/zenodo.6874789
2021
- van Erp, J., van Loon, E., Camphuysen, K. C. J. & Shamoun-Baranes, J. (9-8-2021). Data and analysis script for analysing temporal patterns in bird abundance on the North Sea. Universiteit van Amsterdam. https://doi.org/10.21942/uva.14261609.v2
- Held, P., Adam, L., Alberts, N., Oud, J. & Loon, E. (30-5-2021). Human Foraging Experiment Dataset. Zenodo. https://doi.org/10.5281/zenodo.4871777
- Wiesenberg, G. L. B., Jansen, B., Van Loon, E. . & Thomas, C. (2021). Compiled n-alkane dataset from plants and soils across various studies. PANGAEA. https://doi.org/10.1594/pangaea.938917
2020
- Bos, D., Loon, E., Klop, E. & Ydenberg, R. (14-5-2020). Data from a Large-Scale Experiment to Evaluate the Effects of Trapping to Control Muskrats (Ondatra zibethicus) in The Netherlands. Zenodo. https://doi.org/10.5281/zenodo.3827952
- Yang, S., Cammeraat, E., Jansen, B., den Haan, M., van Loon, E. & Recharte, J. (31-1-2020). Dataset for MS1. Yang et al. 2018. Soil organic carbon stocks controlled by lithology and soil depth in a Peruvian alpine grassland of the Andes. Catena 171, 11–21. https://doi.org/10.1016/j.catena.2018.06.038. Universiteit van Amsterdam. https://doi.org/10.21942/uva.11771190.v2
- Norder, S., van Loon, E. & de Groeve, J. (2020). Placing the first islanders on the world map,Islands on the Map,. DANS Data Station Archaeology. https://doi.org/10.17026/dans-ze3-zu36
2019
- Abcouwer, K. M. & van Loon, E. (2-7-2019). RFID_raw_data_handheld. Universiteit van Amsterdam. https://doi.org/10.21942/uva.8427191.v1
- Parent, C. E., Borges, P. A. V., Ibáñez, M., de Nascimento, L., Rijsdijk, K. F., Cowie, R. H., Alonso, M. R., Fernández-Palacios, J., Otto, R., de Frias Martins, A. M., Borregaard, M. K., Whittaker, R. J., Rigal, F., Kissling, W. ., Florens, F. B. ., van Loon, E. ., Triantis, K. A., Norder, S. J., Proios, K. & Warren, B. H. (2019). Influence of past archipelago configuration on present-day insular biodiversity patterns. PANGAEA. https://doi.org/10.1594/pangaea.893265
- Overbeek, C., Harpenslager, S. F., van Zuidam, J. P., van Loon, E., Lamers, L. P. M., Soons, M. B., Admiraal, W., Verhoeven, J. T. A., Smolders, A. J. P., Roelofs, J. G. M. & van der Geest, H. (2019). ESM Chapter 2 - Drivers of vegetation development, biomass production and the initiation of peat formation in a newly constructed wetland. Zenodo. https://doi.org/10.5281/zenodo.3252883
- Brown, J., van Loon, E., Bouten, W., Camphuysen, C., Lens, L., Müller, W., Thaxter, C. & Shamoun-Baranes, J. (2019). Data for: Does migration distance influence intra-individual variation in migratory behaviour in a seabird species with diverse migration strategies?. Zenodo. https://doi.org/10.5281/zenodo.3565706
2018
- Buler, J. J., Dawson, D. K., Boone, M., Schreckengost, T., van Loon, E., Walters, E. L., McLaren, J. & Smolinsky, J. A. (2018). Data from: Artificial light at night confounds broad-scale habitat use by migrating birds. DRYAD. https://doi.org/10.5061/dryad.18v5d
- Mantzouki, E., Campbell, J., Visser, P., Konstantinou, I., Antoniou, M., Giuliani, G., Machado-Vieira, D., Tsiarta, N., Christoffersen, K., Warming, T., Feldmann, T., Laas, A., Panksep, K., Tuvikene, L., Kangro, K., Salmi, P., Arvola, L., Fastner, J., Straile, D., … Önem, B. (2018). The European Multi Lake Survey (EMLS) dataset of physical, chemical, algal pigments and cyanotoxin parameters 2015.. Environmental Data Initiative. https://doi.org/10.6073/pasta/dabc352040fa58284f78883fa9debe37
- Kissling, W. ., Borges, P. A. V., Hengl, T., Norder, S. J., Rijsdijk, K. F., Baumgartner, J. B. & van Loon, E. . (2018). Paleo Islands and Archipelago Configuration (PIAC) database. PANGAEA. https://doi.org/10.1594/pangaea.880585
- Overbeek, C., van der Geest, H., van Loon, E. . & Admiraal, W. (2018). Online Resources Chapter 3 - Decomposition of standing litter biomass in newly constructed wetlands associated with direct effects of sediment and water characteristics and the composition and activity of the decomposer community using Phragmites australis as a single standard substrate. Zenodo. https://doi.org/10.5281/zenodo.3252887
- Overbeek, C., van Heeringen, S., van Loon, E. ., Admiraal, W. & van der Geest, H. (2018). Supplementary Material Chapter 4 - Decomposition of aquatic pioneer vegetation in newly constructed wetlands. Zenodo. https://doi.org/10.5281/zenodo.3252889
2017
- van Loon, E. ., Kissling, W. ., Hansen, D. M. & Heinen, J. H. (2017). Data from: Extinction-driven changes in frugivore communities on oceanic islands. DRYAD. https://doi.org/10.5061/dryad.s522m
- Bouten, W., Baptist, M. J., Oosterbeek, K., Dokter, A. M., Ens, B. J., van Loon, E. . & Rappoldt, C. (2017). Data from: Balancing food and density-dependence in the spatial distribution of an interference-prone forager. DRYAD. https://doi.org/10.5061/dryad.s8n05
- van Boxel, J., Brandts, E. B., Flantua, S., Grimm, E. C., Hooghiemstra, H. & van Loon, E. (2017). Disclosure of paleoecological datasets of IBED, FNWI, UvA. Ontsluiting van paleoecologische datasets van IBED, FNWI, U,. EASY. https://doi.org/10.17026/dans-zg3-b2jf
- Meijer, C., Bouten, W., Camphuysen, C. J., Shamoun-Baranes, J. & van Loon, E. (2017). Data from: Flap or soar? How a flight generalist responds to its aerial environment. DRYAD. https://doi.org/10.5061/dryad.j6s47
2016
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix B. A table of the abundance of all bird species recorded per sample site.. Wiley. https://doi.org/10.6084/m9.figshare.3513038.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix D. A table of values for each habitat/vegetation structure variable per subplot.. Wiley. https://doi.org/10.6084/m9.figshare.3513032.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix F. Results of one-way ANOVAs testing for differences in (a) short sapling density, (b) tall sapling density, (c) volume of dead wood state 3, (d) volume of dead wood state 5, (e) canopy cover, and (f) canopy height among unlogged forest, older logged forest, and recently logged forest.. Wiley. https://doi.org/10.6084/m9.figshare.3513026.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix E. Estimates of bird species richness per area, using sample-based rarefaction, and species richness estimators (the incidence-based coverage estimator [ICE] and the Chao2 estimator) in addition to the numbers of uniques and duplicates.. Wiley. https://doi.org/10.6084/m9.figshare.3513029.v1
- Cleary, D., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Supplement 1. Three input files and an r script.. Wiley. https://doi.org/10.6084/m9.figshare.3513017.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix C. A detailed description of the habitat/vegetation variables measured during the study.. Wiley. https://doi.org/10.6084/m9.figshare.3513035.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix A. A summary of site characteristics in the three forest types/landscapes.. Wiley. https://doi.org/10.6084/m9.figshare.3513041.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix G. Results of a principal component analysis on bird compositional data using the Hellinger distance.. Wiley. https://doi.org/10.6084/m9.figshare.3513023.v1
- Cleary, D. F. R., Boyle, T. J. B., Anggraeni, C. D., Menken, S. B. J., Setyawati, T. & Van Loon, E. . (2016). Appendix H. Results of one-way ANOVAs testing for differences in the abundance of bird guilds among unlogged forest, older logged forest, and recently logged forest.. Wiley. https://doi.org/10.6084/m9.figshare.3513020.v1
- Shamoun-Baranes, J., Burant, J. B., van Loon, E. ., Camphuysen, C. J. & Bouten, W. (2016). Data from: Short distance migrants travel as far as long distance migrants in lesser black-backed gulls Larus fuscus. DRYAD. https://doi.org/10.5061/dryad.4271s
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Fijn, R. C., Courtens, W., Engels, B. W. R., van Loon, E. E., & Shamoun-Baranes, J. (2024). Combining video and GPS-tracking to study the spatial foraging distribution of a single-prey loading seabird. Avian Research, 15, Article 100196.